Wall clock time and date at job start Mon Mar 30 2020 05:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99907 * 2 1 4 4 C 1.50697 * 109.47185 * 293.95473 * 3 2 1 5 5 H 1.08001 * 120.00113 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99925 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99850 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00068 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.46695 * 90.00565 * 8 6 4 10 10 H 1.48506 * 109.47150 * 210.00154 * 8 6 4 11 11 H 1.48501 * 109.47405 * 330.00428 * 8 6 4 12 12 C 1.46892 * 111.00278 * 123.95596 * 2 1 3 13 13 C 1.52996 * 109.47334 * 66.04546 * 12 2 1 14 14 C 1.53123 * 109.57495 * 65.29951 * 13 12 2 15 15 C 1.53034 * 109.27992 * 177.60435 * 14 13 12 16 16 N 1.46847 * 109.51345 * 300.80438 * 15 14 13 17 17 C 1.46895 * 110.99982 * 185.84805 * 16 15 14 18 18 C 1.53001 * 117.49790 * 248.62113 * 17 16 15 19 19 C 1.53006 * 60.00157 * 252.50752 * 18 17 16 20 20 C 1.46843 * 111.20124 * 61.74903 * 16 15 14 21 21 C 1.53042 * 109.52278 * 298.25596 * 20 16 15 22 22 H 1.08997 * 109.46717 * 296.04240 * 1 2 3 23 23 H 1.09000 * 109.46964 * 56.04828 * 1 2 3 24 24 H 1.08997 * 109.46876 * 176.04315 * 1 2 3 25 25 H 1.08998 * 109.46920 * 53.95337 * 3 2 1 26 26 H 1.08995 * 109.47059 * 173.95262 * 3 2 1 27 27 H 0.96999 * 119.99861 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47132 * 306.04350 * 12 2 1 29 29 H 1.08998 * 109.47608 * 186.05000 * 12 2 1 30 30 H 1.09003 * 109.52281 * 305.13181 * 13 12 2 31 31 H 1.08997 * 109.51083 * 57.65029 * 14 13 12 32 32 H 1.08998 * 109.48980 * 297.53960 * 14 13 12 33 33 H 1.09002 * 109.46271 * 180.79158 * 15 14 13 34 34 H 1.08994 * 109.46242 * 60.81457 * 15 14 13 35 35 H 1.09002 * 115.55182 * 34.32677 * 17 16 15 36 36 H 1.08993 * 117.50121 * 359.97438 * 18 17 16 37 37 H 1.08996 * 117.49842 * 145.02062 * 18 17 16 38 38 H 1.08995 * 117.50070 * 252.51168 * 19 18 17 39 39 H 1.08994 * 117.49688 * 107.48335 * 19 18 17 40 40 H 1.08993 * 109.46313 * 58.27251 * 20 16 15 41 41 H 1.09000 * 109.46480 * 178.25361 * 20 16 15 42 42 H 1.08997 * 109.50758 * 179.11703 * 21 20 16 43 43 H 1.08998 * 109.50897 * 299.20258 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0739 1.5116 -2.0484 6 6 2.0277 3.3492 -1.5288 7 7 1.7143 3.9391 -2.6618 8 14 3.0008 4.2759 -0.2313 9 1 4.4532 4.0625 -0.4557 10 1 2.6935 5.7258 -0.3237 11 1 2.6295 3.7760 1.1169 12 6 1.9955 -0.7660 1.1375 13 6 1.6316 -2.2426 0.9702 14 6 2.3479 -2.8116 -0.2577 15 6 2.0268 -4.3025 -0.3841 16 7 2.4659 -5.0035 0.8292 17 6 2.3002 -6.4561 0.6871 18 6 1.2318 -7.1329 1.5481 19 6 2.7140 -7.3336 1.8703 20 6 1.7571 -4.5066 2.0154 21 6 2.0699 -3.0217 2.2135 22 1 -0.3632 0.4512 0.9233 23 1 -0.3633 0.5739 -0.8525 24 1 -0.3633 -1.0252 -0.0709 25 1 1.5611 1.9273 0.8309 26 1 3.0797 1.3445 0.1083 27 1 1.9895 4.8549 -2.8241 28 1 1.5612 -0.3872 2.0627 29 1 3.0797 -0.6611 1.1756 30 1 0.5536 -2.3397 0.8408 31 1 3.4239 -2.6793 -0.1452 32 1 2.0079 -2.2890 -1.1517 33 1 2.5466 -4.7139 -1.2494 34 1 0.9521 -4.4332 -0.5102 35 1 2.4648 -6.8523 -0.3150 36 1 0.6521 -6.5004 2.2203 37 1 0.6931 -7.9744 1.1125 38 1 3.1504 -8.3070 1.6466 39 1 3.1091 -6.8328 2.7541 40 1 0.6837 -4.6365 1.8780 41 1 2.0812 -5.0660 2.8930 42 1 1.5314 -2.6493 3.0849 43 1 3.1415 -2.8925 2.3654 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260689599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:51 Heat of formation + Delta-G solvation = 30.804793 kcal Electronic energy + Delta-G solvation = -19132.957601 eV Core-core repulsion = 16406.679093 eV Total energy + Delta-G solvation = -2726.278508 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.76517 -37.47983 -35.55924 -32.69010 -31.74230 -30.66982 -28.00124 -26.82566 -24.61856 -23.19926 -22.64716 -22.00221 -20.62954 -19.81579 -19.25450 -16.88795 -16.69299 -15.58074 -14.95472 -14.63884 -14.47940 -14.22041 -14.08945 -13.64294 -13.45436 -12.87062 -12.64261 -12.37769 -12.14067 -11.94024 -11.76132 -11.64814 -11.31426 -11.03426 -10.97243 -10.87279 -10.79191 -10.56633 -10.47447 -10.14992 -10.11334 -9.98316 -9.70042 -9.24091 -8.54867 -8.20768 -7.31240 -6.03407 -4.00304 3.29876 3.37090 3.39400 3.49641 3.88543 4.43787 4.59887 4.69879 4.72514 4.78747 4.89121 5.04950 5.15990 5.29229 5.32882 5.41247 5.45551 5.52073 5.58483 5.63581 5.72088 5.80862 5.84565 5.88451 5.90692 6.08190 6.11246 6.18597 6.22690 6.26160 6.38520 6.60288 6.69113 6.74933 6.90284 7.01944 7.04085 7.08824 7.62558 7.94755 8.09927 8.68897 9.05242 9.58761 11.09785 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.047689 B = 0.004003 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.991071 B = 6993.392711 C = 7125.210421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.529 5.529 3 C 0.161 3.839 4 C -0.507 4.507 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.902 5.902 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.269 1.269 12 C 0.058 3.942 13 C -0.083 4.083 14 C -0.102 4.102 15 C 0.057 3.943 16 N -0.506 5.506 17 C 0.026 3.974 18 C -0.224 4.224 19 C -0.174 4.174 20 C 0.055 3.945 21 C -0.113 4.113 22 H 0.009 0.991 23 H 0.078 0.922 24 H 0.048 0.952 25 H -0.014 1.014 26 H 0.023 0.977 27 H 0.263 0.737 28 H 0.020 0.980 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.032 0.968 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.035 0.965 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.090 -19.743 9.733 22.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.252 5.252 3 C 0.035 3.965 4 C -0.545 4.545 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.070 4.070 13 C -0.102 4.102 14 C -0.139 4.139 15 C -0.070 4.070 16 N -0.229 5.229 17 C -0.084 4.084 18 C -0.263 4.263 19 C -0.212 4.212 20 C -0.072 4.072 21 C -0.151 4.151 22 H 0.027 0.973 23 H 0.097 0.903 24 H 0.067 0.933 25 H 0.004 0.996 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.136 0.864 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.053 0.947 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.593 -19.652 9.248 21.727 hybrid contribution -0.596 0.811 1.333 1.670 sum -0.003 -18.841 10.580 21.608 Atomic orbital electron populations 1.22271 0.88607 0.99780 1.00635 1.61905 1.07128 1.16174 1.40001 1.20176 0.94859 0.84322 0.97142 1.21047 1.35442 0.97175 1.00880 0.90141 1.24904 0.95845 0.97383 0.95271 1.69898 1.47004 1.13289 1.23896 0.86868 0.80930 0.79238 0.82755 1.20127 1.21250 1.19347 1.22124 0.99934 0.92743 0.92233 1.21211 0.99947 0.94426 0.94632 1.21530 1.00990 0.92293 0.99124 1.22179 0.97968 0.95440 0.91392 1.61821 1.56105 1.01129 1.03798 1.22669 1.01922 0.87615 0.96189 1.23548 0.92640 1.04313 1.05844 1.23046 0.96966 1.00875 1.00282 1.22166 0.95874 0.96144 0.93039 1.21651 1.02199 0.93352 0.97903 0.97284 0.90310 0.93336 0.99583 0.95901 0.92710 0.96173 0.91439 0.91583 0.91469 0.89583 0.90875 0.94966 0.86449 0.88416 0.89022 0.88640 0.88652 0.94653 0.91082 0.91843 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 9.15 60.07 0.55 1.23 16 2 N -0.53 -10.99 4.27 -244.38 -1.04 -12.03 16 3 C 0.16 3.96 3.79 -4.98 -0.02 3.94 16 4 C -0.51 -14.48 9.01 -34.44 -0.31 -14.79 16 5 H 0.08 2.49 7.37 -52.49 -0.39 2.10 16 6 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 8 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 12 C 0.06 1.00 4.35 -3.83 -0.02 0.98 16 13 C -0.08 -1.17 2.17 -90.49 -0.20 -1.37 16 14 C -0.10 -1.44 5.24 -26.65 -0.14 -1.58 16 15 C 0.06 0.70 5.44 -3.84 -0.02 0.68 16 16 N -0.51 -5.86 4.88 -226.70 -1.11 -6.96 16 17 C 0.03 0.25 6.11 -67.71 -0.41 -0.16 16 18 C -0.22 -1.94 9.58 -26.73 -0.26 -2.20 16 19 C -0.17 -1.49 9.94 -26.72 -0.27 -1.75 16 20 C 0.06 0.61 4.12 -3.83 -0.02 0.59 16 21 C -0.11 -1.34 5.38 -26.64 -0.14 -1.49 16 22 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 23 H 0.08 1.69 6.76 -51.93 -0.35 1.34 16 24 H 0.05 0.80 6.37 -51.93 -0.33 0.47 16 25 H -0.01 -0.34 7.18 -51.93 -0.37 -0.71 16 26 H 0.02 0.56 7.36 -51.93 -0.38 0.18 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 29 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 30 H 0.07 0.95 6.33 -51.93 -0.33 0.62 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.38 7.84 -51.93 -0.41 0.98 16 33 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.12 1.06 8.04 -51.93 -0.42 0.65 16 36 H 0.10 0.88 5.97 -51.93 -0.31 0.57 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.85 7.23 -51.93 -0.38 0.47 16 40 H 0.04 0.39 7.12 -51.93 -0.37 0.02 16 41 H 0.07 0.71 6.42 -51.93 -0.33 0.38 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 324.49 15.07 4.89 4.89 Total: -1.00 -29.95 324.49 -10.24 -40.19 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.74 Total: -2.07 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -1.35 Total: -14.06 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -1.38 Total: -45.99 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.95 -10.24 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260689599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.995 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds