Wall clock time and date at job start Mon Mar 30 2020 05:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99907 * 2 1 4 4 C 1.50697 * 109.47185 * 293.95473 * 3 2 1 5 5 H 1.08001 * 120.00113 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99925 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99850 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00068 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.46695 * 90.00565 * 8 6 4 10 10 H 1.48506 * 109.47150 * 210.00154 * 8 6 4 11 11 H 1.48501 * 109.47405 * 330.00428 * 8 6 4 12 12 C 1.46892 * 111.00278 * 123.95596 * 2 1 3 13 13 C 1.52996 * 109.47334 * 66.04546 * 12 2 1 14 14 C 1.53123 * 109.57495 * 65.29951 * 13 12 2 15 15 C 1.53034 * 109.27992 * 177.60435 * 14 13 12 16 16 N 1.46847 * 109.51345 * 300.80438 * 15 14 13 17 17 C 1.46895 * 110.99982 * 185.84805 * 16 15 14 18 18 C 1.53001 * 117.49790 * 248.62113 * 17 16 15 19 19 C 1.53006 * 60.00157 * 252.50752 * 18 17 16 20 20 C 1.46843 * 111.20124 * 61.74903 * 16 15 14 21 21 C 1.53042 * 109.52278 * 298.25596 * 20 16 15 22 22 H 1.08997 * 109.46717 * 296.04240 * 1 2 3 23 23 H 1.09000 * 109.46964 * 56.04828 * 1 2 3 24 24 H 1.08997 * 109.46876 * 176.04315 * 1 2 3 25 25 H 1.08998 * 109.46920 * 53.95337 * 3 2 1 26 26 H 1.08995 * 109.47059 * 173.95262 * 3 2 1 27 27 H 0.96999 * 119.99861 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47132 * 306.04350 * 12 2 1 29 29 H 1.08998 * 109.47608 * 186.05000 * 12 2 1 30 30 H 1.09003 * 109.52281 * 305.13181 * 13 12 2 31 31 H 1.08997 * 109.51083 * 57.65029 * 14 13 12 32 32 H 1.08998 * 109.48980 * 297.53960 * 14 13 12 33 33 H 1.09002 * 109.46271 * 180.79158 * 15 14 13 34 34 H 1.08994 * 109.46242 * 60.81457 * 15 14 13 35 35 H 1.09002 * 115.55182 * 34.32677 * 17 16 15 36 36 H 1.08993 * 117.50121 * 359.97438 * 18 17 16 37 37 H 1.08996 * 117.49842 * 145.02062 * 18 17 16 38 38 H 1.08995 * 117.50070 * 252.51168 * 19 18 17 39 39 H 1.08994 * 117.49688 * 107.48335 * 19 18 17 40 40 H 1.08993 * 109.46313 * 58.27251 * 20 16 15 41 41 H 1.09000 * 109.46480 * 178.25361 * 20 16 15 42 42 H 1.08997 * 109.50758 * 179.11703 * 21 20 16 43 43 H 1.08998 * 109.50897 * 299.20258 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0739 1.5116 -2.0484 6 6 2.0277 3.3492 -1.5288 7 7 1.7143 3.9391 -2.6618 8 14 3.0008 4.2759 -0.2313 9 1 4.4532 4.0625 -0.4557 10 1 2.6935 5.7258 -0.3237 11 1 2.6295 3.7760 1.1169 12 6 1.9955 -0.7660 1.1375 13 6 1.6316 -2.2426 0.9702 14 6 2.3479 -2.8116 -0.2577 15 6 2.0268 -4.3025 -0.3841 16 7 2.4659 -5.0035 0.8292 17 6 2.3002 -6.4561 0.6871 18 6 1.2318 -7.1329 1.5481 19 6 2.7140 -7.3336 1.8703 20 6 1.7571 -4.5066 2.0154 21 6 2.0699 -3.0217 2.2135 22 1 -0.3632 0.4512 0.9233 23 1 -0.3633 0.5739 -0.8525 24 1 -0.3633 -1.0252 -0.0709 25 1 1.5611 1.9273 0.8309 26 1 3.0797 1.3445 0.1083 27 1 1.9895 4.8549 -2.8241 28 1 1.5612 -0.3872 2.0627 29 1 3.0797 -0.6611 1.1756 30 1 0.5536 -2.3397 0.8408 31 1 3.4239 -2.6793 -0.1452 32 1 2.0079 -2.2890 -1.1517 33 1 2.5466 -4.7139 -1.2494 34 1 0.9521 -4.4332 -0.5102 35 1 2.4648 -6.8523 -0.3150 36 1 0.6521 -6.5004 2.2203 37 1 0.6931 -7.9744 1.1125 38 1 3.1504 -8.3070 1.6466 39 1 3.1091 -6.8328 2.7541 40 1 0.6837 -4.6365 1.8780 41 1 2.0812 -5.0660 2.8930 42 1 1.5314 -2.6493 3.0849 43 1 3.1415 -2.8925 2.3654 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260689599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:50 Heat of formation + Delta-G solvation = 11.364929 kcal Electronic energy + Delta-G solvation = -19133.800577 eV Core-core repulsion = 16406.679093 eV Total energy + Delta-G solvation = -2727.121484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.69288 -38.77649 -36.76454 -34.66831 -33.00176 -31.67606 -29.89755 -28.21042 -26.12132 -24.27572 -23.49205 -23.14623 -21.99627 -21.09952 -20.28312 -18.97578 -17.57912 -16.67454 -16.34788 -16.21405 -16.08447 -15.32433 -15.15136 -14.96343 -14.76427 -14.43080 -13.92338 -13.84344 -13.51177 -13.10299 -12.95040 -12.81118 -12.54021 -12.49345 -12.42138 -12.34403 -11.92811 -11.91828 -11.71915 -11.55401 -11.38926 -11.22898 -11.14477 -10.93726 -10.77770 -9.04326 -8.97281 -8.28091 -6.31123 1.34690 1.35684 1.46422 2.34423 2.73116 3.05013 3.13915 3.25300 3.82349 3.83671 3.94791 4.03041 4.11625 4.14654 4.36181 4.43611 4.47074 4.49674 4.54121 4.66500 4.70749 4.75478 4.78620 4.81944 4.92156 4.93455 4.95542 4.98496 5.04845 5.09714 5.17322 5.22000 5.26449 5.29556 5.45771 5.53983 5.56966 6.00711 6.16988 6.20882 6.38746 6.68015 6.75336 7.32566 8.88538 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.047689 B = 0.004003 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.991071 B = 6993.392711 C = 7125.210421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.543 5.543 3 C 0.171 3.829 4 C -0.515 4.515 5 H 0.039 0.961 6 C 0.007 3.993 7 N -0.948 5.948 8 Si 0.947 3.053 9 H -0.265 1.265 10 H -0.281 1.281 11 H -0.253 1.253 12 C 0.060 3.940 13 C -0.075 4.075 14 C -0.097 4.097 15 C 0.065 3.935 16 N -0.517 5.517 17 C 0.008 3.992 18 C -0.218 4.218 19 C -0.167 4.167 20 C 0.059 3.941 21 C -0.106 4.106 22 H 0.016 0.984 23 H 0.046 0.954 24 H 0.077 0.923 25 H -0.015 1.015 26 H 0.026 0.974 27 H 0.267 0.733 28 H 0.029 0.971 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.032 0.968 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.037 0.963 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.478 -21.210 12.098 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.044 3.956 4 C -0.553 4.553 5 H 0.057 0.943 6 C -0.190 4.190 7 N -0.589 5.589 8 Si 0.770 3.230 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.177 1.177 12 C -0.068 4.068 13 C -0.094 4.094 14 C -0.135 4.135 15 C -0.062 4.062 16 N -0.239 5.239 17 C -0.101 4.101 18 C -0.257 4.257 19 C -0.204 4.204 20 C -0.069 4.069 21 C -0.145 4.145 22 H 0.035 0.965 23 H 0.065 0.935 24 H 0.095 0.905 25 H 0.003 0.997 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.140 0.860 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.111 0.889 40 H 0.055 0.945 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.156 -21.153 11.626 24.165 hybrid contribution -0.819 1.185 0.528 1.535 sum 0.336 -19.968 12.154 23.378 Atomic orbital electron populations 1.22195 0.87820 1.01101 0.99522 1.61808 1.07984 1.14350 1.42484 1.19936 0.94981 0.86116 0.94585 1.21272 1.34746 0.97494 1.01779 0.94303 1.25846 0.97056 0.98450 0.97655 1.70051 1.48663 1.13932 1.26297 0.85719 0.79479 0.77656 0.80099 1.18965 1.20685 1.17701 1.22204 0.99659 0.93951 0.91001 1.21135 0.99805 0.92652 0.95776 1.21422 1.00225 0.93756 0.98142 1.22037 0.97966 0.94016 0.92228 1.61809 1.56391 1.02251 1.03477 1.22769 1.03564 0.86661 0.97117 1.23570 0.92707 1.04263 1.05147 1.23109 0.96923 1.01062 0.99353 1.22154 0.95952 0.95438 0.93343 1.21598 1.02075 0.93791 0.97004 0.96518 0.93509 0.90466 0.99732 0.95601 0.92443 0.95321 0.91688 0.91626 0.92445 0.92123 0.90380 0.95014 0.85962 0.88608 0.87989 0.87258 0.88886 0.94498 0.89782 0.90470 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.15 127.69 1.17 2.78 16 2 N -0.54 -22.48 4.27 -927.09 -3.96 -26.44 16 3 C 0.17 8.35 3.79 85.56 0.32 8.68 16 4 C -0.51 -30.20 9.01 25.60 0.23 -29.97 16 5 H 0.04 2.54 7.37 -2.91 -0.02 2.51 16 6 C 0.01 0.42 5.47 84.65 0.46 0.88 16 7 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 8 Si 0.95 44.62 27.47 68.60 1.88 46.51 16 9 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 12 C 0.06 1.95 4.35 86.30 0.38 2.33 16 13 C -0.07 -1.99 2.17 -10.71 -0.02 -2.01 16 14 C -0.10 -2.71 5.24 30.65 0.16 -2.55 16 15 C 0.06 1.50 5.44 86.32 0.47 1.97 16 16 N -0.52 -10.95 4.88 -871.13 -4.25 -15.19 16 17 C 0.01 0.14 6.11 44.92 0.27 0.41 16 18 C -0.22 -3.20 9.58 30.60 0.29 -2.90 16 19 C -0.17 -2.41 9.94 30.60 0.30 -2.10 16 20 C 0.06 1.13 4.12 86.33 0.36 1.49 16 21 C -0.11 -2.28 5.38 30.65 0.16 -2.11 16 22 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 23 H 0.05 2.07 6.76 -2.39 -0.02 2.06 16 24 H 0.08 2.48 6.37 -2.39 -0.02 2.47 16 25 H -0.01 -0.73 7.18 -2.39 -0.02 -0.75 16 26 H 0.03 1.25 7.36 -2.39 -0.02 1.23 16 27 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 28 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 29 H 0.06 2.15 7.93 -2.39 -0.02 2.13 16 30 H 0.07 1.76 6.33 -2.39 -0.02 1.75 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.98 7.84 -2.39 -0.02 1.96 16 33 H 0.08 1.70 8.07 -2.39 -0.02 1.69 16 34 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.12 1.97 8.04 -2.39 -0.02 1.95 16 36 H 0.10 1.46 5.97 -2.39 -0.01 1.44 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 1.40 7.23 -2.39 -0.02 1.38 16 40 H 0.04 0.72 7.12 -2.39 -0.02 0.70 16 41 H 0.08 1.44 6.42 -2.39 -0.02 1.42 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -65.19 324.49 -0.57 -65.76 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.90 Total: 12.12 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 4.56 Total: -23.11 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -7.91 Total: -101.27 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.51 kcal Total: -65.19 -0.57 -65.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260689599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.122 kcal (2) G-P(sol) polarization free energy of solvation -65.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds