Wall clock time and date at job start Mon Mar 30 2020 04:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46952 * 111.00697 * 2 1 4 4 C 1.53045 * 109.38529 * 176.79928 * 3 2 1 5 5 N 1.47003 * 109.34035 * 58.38721 * 4 3 2 6 6 C 1.46904 * 110.98987 * 176.82022 * 5 4 3 7 7 C 1.54264 * 110.03124 * 60.98363 * 6 5 4 8 8 C 1.54894 * 104.19401 * 217.10287 * 7 6 5 9 9 C 1.54886 * 102.74741 * 37.93884 * 8 7 6 10 10 C 1.53868 * 110.03460 * 303.80885 * 6 5 4 11 11 C 1.46953 * 110.89186 * 300.69409 * 5 4 3 12 12 C 1.46964 * 110.99973 * 236.19474 * 2 1 3 13 13 H 1.08997 * 109.48634 * 63.22235 * 12 2 1 14 14 C 1.53006 * 109.48774 * 303.18302 * 12 2 1 15 15 C 1.50698 * 109.46859 * 175.11413 * 14 12 2 16 16 H 1.08004 * 119.99895 * 354.92307 * 15 14 12 17 17 C 1.37876 * 120.00097 * 174.91420 * 15 14 12 18 18 N 1.31520 * 119.99693 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47089 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47297 * 120.00101 * 19 17 15 22 22 H 1.48500 * 109.47335 * 240.00378 * 19 17 15 23 23 H 1.09005 * 109.46800 * 66.75351 * 1 2 3 24 24 H 1.08998 * 109.47876 * 186.75147 * 1 2 3 25 25 H 1.09003 * 109.46932 * 306.75898 * 1 2 3 26 26 H 1.09005 * 109.48311 * 296.77989 * 3 2 1 27 27 H 1.08996 * 109.49074 * 56.81583 * 3 2 1 28 28 H 1.09003 * 109.49060 * 178.37545 * 4 3 2 29 29 H 1.09000 * 109.48868 * 298.44489 * 4 3 2 30 30 H 1.09001 * 110.00945 * 182.41748 * 6 5 4 31 31 H 1.08997 * 110.48525 * 335.77613 * 7 6 5 32 32 H 1.08993 * 110.49037 * 98.42007 * 7 6 5 33 33 H 1.08999 * 110.75451 * 279.62856 * 8 7 6 34 34 H 1.08999 * 110.75825 * 156.25830 * 8 7 6 35 35 H 1.09003 * 110.48644 * 203.38444 * 9 8 7 36 36 H 1.08995 * 110.59947 * 80.79528 * 9 8 7 37 37 H 1.09000 * 110.03716 * 238.56999 * 10 6 5 38 38 H 1.08999 * 110.03660 * 359.95527 * 10 6 5 39 39 H 1.08998 * 109.49288 * 299.35256 * 11 5 4 40 40 H 1.09001 * 109.48923 * 179.28882 * 11 5 4 41 41 H 1.09000 * 109.47209 * 295.11439 * 14 12 2 42 42 H 1.08999 * 109.46860 * 55.11768 * 14 12 2 43 43 H 0.97000 * 120.00036 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3719 0.0000 4 6 3.5235 1.3293 0.0806 5 7 4.0501 0.5655 -1.0597 6 6 5.5192 0.5655 -1.0596 7 6 6.0475 -0.0963 0.2298 8 6 7.3028 0.7340 0.5960 9 6 6.8767 2.1774 0.2298 10 6 6.0463 2.0111 -1.0597 11 6 3.5234 -0.8063 -1.0596 12 6 1.9957 -0.7634 -1.1401 13 1 1.6938 -0.2823 -2.0704 14 6 1.4416 -2.1890 -1.0995 15 6 1.8847 -2.9354 -2.3314 16 1 2.4302 -2.4199 -3.1080 17 6 1.5939 -4.2763 -2.4669 18 7 0.9294 -4.9038 -1.5212 19 14 2.1438 -5.2017 -3.9935 20 1 2.8690 -4.2751 -4.8996 21 1 3.0447 -6.3146 -3.6000 22 1 0.9554 -5.7509 -4.6943 23 1 -0.3633 0.4056 -0.9443 24 1 -0.3635 -1.0205 0.1208 25 1 -0.3633 0.6150 0.8234 26 1 1.6939 1.8772 -0.9174 27 1 1.6011 1.9130 0.8599 28 1 3.9177 2.3452 0.0516 29 1 3.8253 0.8482 1.0109 30 1 5.8922 0.0319 -1.9338 31 1 5.3033 -0.0328 1.0237 32 1 6.3186 -1.1351 0.0420 33 1 8.1601 0.4214 -0.0001 34 1 7.5216 0.6542 1.6608 35 1 7.7530 2.7978 0.0418 36 1 6.2670 2.6101 1.0229 37 1 6.6760 2.1789 -1.9335 38 1 5.2122 2.7128 -1.0606 39 1 3.8252 -1.3118 -0.1423 40 1 3.9177 -1.3473 -1.9198 41 1 1.8153 -2.6989 -0.2116 42 1 0.3526 -2.1547 -1.0675 43 1 0.7245 -5.8471 -1.6166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260955869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:03 Heat of formation + Delta-G solvation = 0.563439 kcal Electronic energy + Delta-G solvation = -19914.063815 eV Core-core repulsion = 17186.473943 eV Total energy + Delta-G solvation = -2727.589872 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.71779 -37.42839 -33.92434 -33.24094 -31.12547 -28.87288 -28.73507 -27.01918 -25.66743 -23.79776 -22.81081 -21.49057 -20.65486 -19.09740 -18.50937 -16.55514 -16.18262 -15.63624 -14.62656 -14.56912 -14.32425 -14.29629 -14.06014 -13.71535 -13.32659 -12.67777 -12.21758 -12.14135 -11.85715 -11.53101 -11.39048 -11.30780 -11.09306 -11.03933 -10.97572 -10.82198 -10.72780 -10.49973 -10.45246 -10.38766 -10.14825 -9.75748 -9.20629 -9.04672 -8.32690 -7.86530 -7.61965 -5.99002 -4.00554 3.31593 3.39463 3.43534 4.25005 4.42419 4.62313 4.66475 4.75592 4.96499 5.34112 5.37077 5.45410 5.47112 5.55714 5.62280 5.64450 5.66091 5.71453 5.86053 5.89639 5.92328 5.99132 6.01534 6.09518 6.15615 6.18927 6.26260 6.29565 6.37771 6.46571 6.51260 6.59757 6.80265 6.97056 7.44540 7.53695 7.60805 7.65758 7.85678 7.87792 8.08830 8.44927 9.06142 9.62895 11.12391 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020853 B = 0.006471 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.389348 B = 4325.974599 C = 5255.372331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.543 5.543 3 C 0.057 3.943 4 C 0.055 3.945 5 N -0.537 5.537 6 C 0.082 3.918 7 C -0.160 4.160 8 C -0.121 4.121 9 C -0.125 4.125 10 C -0.121 4.121 11 C 0.075 3.925 12 C 0.095 3.905 13 H 0.035 0.965 14 C 0.030 3.970 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 H 0.019 0.981 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.033 0.967 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.019 0.981 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.410 13.390 4.031 16.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.268 5.268 3 C -0.072 4.072 4 C -0.073 4.073 5 N -0.260 5.260 6 C -0.027 4.027 7 C -0.199 4.199 8 C -0.159 4.159 9 C -0.162 4.162 10 C -0.159 4.159 11 C -0.052 4.052 12 C -0.013 4.013 13 H 0.053 0.947 14 C -0.008 4.008 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.037 0.963 24 H 0.098 0.902 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.103 0.897 41 H 0.045 0.955 42 H 0.037 0.963 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.324 13.223 4.056 16.143 hybrid contribution 0.216 -0.670 -0.819 1.080 sum 8.540 12.553 3.237 15.524 Atomic orbital electron populations 1.22328 0.87880 1.02825 0.98930 1.62221 1.07539 1.11992 1.45088 1.22105 0.94482 0.90807 0.99807 1.22172 0.94340 0.98038 0.92799 1.62497 1.05952 1.15744 1.41830 1.22340 0.87697 0.95552 0.97134 1.23072 0.97718 0.99742 0.99359 1.22423 0.97747 0.95135 1.00587 1.22371 0.99285 0.96892 0.97686 1.22265 0.99391 0.96761 0.97444 1.22138 0.94889 0.86775 1.01380 1.21892 0.93104 0.96925 0.89379 0.94726 1.19188 0.96079 0.87920 0.97565 1.21228 1.35796 0.94369 1.04102 0.92560 1.24979 0.95271 0.97718 0.96267 1.69982 1.40154 1.10135 1.33014 0.86583 0.78421 0.79915 0.83386 1.19719 1.21064 1.21071 0.96255 0.90236 0.92822 0.94925 0.91445 0.90956 0.94086 0.89948 0.90915 0.91545 0.91678 0.92030 0.92040 0.91934 0.91792 0.90749 0.94364 0.89697 0.95526 0.96284 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.06 60.06 0.54 1.05 16 2 N -0.54 -10.34 4.78 -234.73 -1.12 -11.46 16 3 C 0.06 0.90 5.61 -3.77 -0.02 0.88 16 4 C 0.05 0.82 4.95 -3.74 -0.02 0.80 16 5 N -0.54 -8.86 4.71 -225.12 -1.06 -9.92 16 6 C 0.08 1.15 3.06 -66.60 -0.20 0.94 16 7 C -0.16 -2.13 5.12 -25.07 -0.13 -2.26 16 8 C -0.12 -1.30 6.91 -24.74 -0.17 -1.47 16 9 C -0.12 -1.26 6.83 -25.07 -0.17 -1.43 16 10 C -0.12 -1.39 5.91 -25.61 -0.15 -1.54 16 11 C 0.08 1.50 4.39 -3.77 -0.02 1.48 16 12 C 0.09 2.05 1.98 -67.65 -0.13 1.91 16 13 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 14 C 0.03 0.78 4.27 -27.88 -0.12 0.66 16 15 C -0.52 -14.35 8.33 -34.44 -0.29 -14.64 16 16 H 0.06 1.54 7.25 -52.48 -0.38 1.16 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 19 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.08 1.54 6.31 -51.93 -0.33 1.21 16 25 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 28 H 0.07 0.93 6.01 -51.93 -0.31 0.62 16 29 H 0.04 0.64 6.12 -51.93 -0.32 0.32 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.06 5.63 -51.93 -0.29 0.77 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.88 6.11 -51.93 -0.32 0.57 16 39 H 0.04 0.80 7.20 -51.93 -0.37 0.42 16 40 H 0.08 1.81 7.11 -51.93 -0.37 1.44 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.02 0.52 6.15 -51.93 -0.32 0.20 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 317.46 15.07 4.78 4.78 Total: -1.00 -29.11 317.46 -10.30 -39.41 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -7.64 Total: -1.40 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.98 Total: -12.04 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -1.45 Total: -47.31 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.11 -10.30 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260955869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.969 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds