Wall clock time and date at job start Mon Mar 30 2020 04:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46952 * 111.00697 * 2 1 4 4 C 1.53045 * 109.38529 * 176.79928 * 3 2 1 5 5 N 1.47003 * 109.34035 * 58.38721 * 4 3 2 6 6 C 1.46904 * 110.98987 * 176.82022 * 5 4 3 7 7 C 1.54264 * 110.03124 * 60.98363 * 6 5 4 8 8 C 1.54894 * 104.19401 * 217.10287 * 7 6 5 9 9 C 1.54886 * 102.74741 * 37.93884 * 8 7 6 10 10 C 1.53868 * 110.03460 * 303.80885 * 6 5 4 11 11 C 1.46953 * 110.89186 * 300.69409 * 5 4 3 12 12 C 1.46964 * 110.99973 * 236.19474 * 2 1 3 13 13 H 1.08997 * 109.48634 * 63.22235 * 12 2 1 14 14 C 1.53006 * 109.48774 * 303.18302 * 12 2 1 15 15 C 1.50698 * 109.46859 * 175.11413 * 14 12 2 16 16 H 1.08004 * 119.99895 * 354.92307 * 15 14 12 17 17 C 1.37876 * 120.00097 * 174.91420 * 15 14 12 18 18 N 1.31520 * 119.99693 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47089 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47297 * 120.00101 * 19 17 15 22 22 H 1.48500 * 109.47335 * 240.00378 * 19 17 15 23 23 H 1.09005 * 109.46800 * 66.75351 * 1 2 3 24 24 H 1.08998 * 109.47876 * 186.75147 * 1 2 3 25 25 H 1.09003 * 109.46932 * 306.75898 * 1 2 3 26 26 H 1.09005 * 109.48311 * 296.77989 * 3 2 1 27 27 H 1.08996 * 109.49074 * 56.81583 * 3 2 1 28 28 H 1.09003 * 109.49060 * 178.37545 * 4 3 2 29 29 H 1.09000 * 109.48868 * 298.44489 * 4 3 2 30 30 H 1.09001 * 110.00945 * 182.41748 * 6 5 4 31 31 H 1.08997 * 110.48525 * 335.77613 * 7 6 5 32 32 H 1.08993 * 110.49037 * 98.42007 * 7 6 5 33 33 H 1.08999 * 110.75451 * 279.62856 * 8 7 6 34 34 H 1.08999 * 110.75825 * 156.25830 * 8 7 6 35 35 H 1.09003 * 110.48644 * 203.38444 * 9 8 7 36 36 H 1.08995 * 110.59947 * 80.79528 * 9 8 7 37 37 H 1.09000 * 110.03716 * 238.56999 * 10 6 5 38 38 H 1.08999 * 110.03660 * 359.95527 * 10 6 5 39 39 H 1.08998 * 109.49288 * 299.35256 * 11 5 4 40 40 H 1.09001 * 109.48923 * 179.28882 * 11 5 4 41 41 H 1.09000 * 109.47209 * 295.11439 * 14 12 2 42 42 H 1.08999 * 109.46860 * 55.11768 * 14 12 2 43 43 H 0.97000 * 120.00036 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3719 0.0000 4 6 3.5235 1.3293 0.0806 5 7 4.0501 0.5655 -1.0597 6 6 5.5192 0.5655 -1.0596 7 6 6.0475 -0.0963 0.2298 8 6 7.3028 0.7340 0.5960 9 6 6.8767 2.1774 0.2298 10 6 6.0463 2.0111 -1.0597 11 6 3.5234 -0.8063 -1.0596 12 6 1.9957 -0.7634 -1.1401 13 1 1.6938 -0.2823 -2.0704 14 6 1.4416 -2.1890 -1.0995 15 6 1.8847 -2.9354 -2.3314 16 1 2.4302 -2.4199 -3.1080 17 6 1.5939 -4.2763 -2.4669 18 7 0.9294 -4.9038 -1.5212 19 14 2.1438 -5.2017 -3.9935 20 1 2.8690 -4.2751 -4.8996 21 1 3.0447 -6.3146 -3.6000 22 1 0.9554 -5.7509 -4.6943 23 1 -0.3633 0.4056 -0.9443 24 1 -0.3635 -1.0205 0.1208 25 1 -0.3633 0.6150 0.8234 26 1 1.6939 1.8772 -0.9174 27 1 1.6011 1.9130 0.8599 28 1 3.9177 2.3452 0.0516 29 1 3.8253 0.8482 1.0109 30 1 5.8922 0.0319 -1.9338 31 1 5.3033 -0.0328 1.0237 32 1 6.3186 -1.1351 0.0420 33 1 8.1601 0.4214 -0.0001 34 1 7.5216 0.6542 1.6608 35 1 7.7530 2.7978 0.0418 36 1 6.2670 2.6101 1.0229 37 1 6.6760 2.1789 -1.9335 38 1 5.2122 2.7128 -1.0606 39 1 3.8252 -1.3118 -0.1423 40 1 3.9177 -1.3473 -1.9198 41 1 1.8153 -2.6989 -0.2116 42 1 0.3526 -2.1547 -1.0675 43 1 0.7245 -5.8471 -1.6166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260955869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:03 Heat of formation + Delta-G solvation = -18.536067 kcal Electronic energy + Delta-G solvation = -19914.892031 eV Core-core repulsion = 17186.473943 eV Total energy + Delta-G solvation = -2728.418088 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.01794 -38.74161 -35.42358 -35.03852 -32.94189 -30.17644 -29.74185 -28.72304 -26.99090 -25.65954 -24.26081 -23.00050 -21.67130 -20.51812 -19.83836 -18.61767 -17.46114 -16.80480 -16.50933 -15.98377 -15.83026 -15.65238 -15.30685 -15.23909 -14.40043 -14.11837 -13.91264 -13.88597 -13.42268 -13.05419 -12.96734 -12.67902 -12.54451 -12.44167 -12.26846 -12.16417 -11.97139 -11.86501 -11.83468 -11.63802 -11.44567 -11.31152 -11.11426 -10.99613 -10.52870 -9.27267 -9.10113 -8.19625 -6.29210 1.38639 1.39195 1.52253 2.39825 2.96455 3.10174 3.14832 3.69493 3.79132 3.96820 4.09762 4.17340 4.24367 4.37454 4.41450 4.53396 4.56554 4.60993 4.66485 4.68084 4.69650 4.78638 4.82515 4.88039 4.93812 5.01878 5.03037 5.08237 5.10991 5.18313 5.25602 5.33643 5.41028 5.45249 5.49876 5.65826 5.75348 6.04628 6.13598 6.25571 6.34791 6.39053 6.85827 7.38985 8.92728 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020853 B = 0.006471 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.389348 B = 4325.974599 C = 5255.372331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.555 5.555 3 C 0.056 3.944 4 C 0.057 3.943 5 N -0.540 5.540 6 C 0.075 3.925 7 C -0.159 4.159 8 C -0.115 4.115 9 C -0.118 4.118 10 C -0.114 4.114 11 C 0.091 3.909 12 C 0.107 3.893 13 H 0.019 0.981 14 C 0.042 3.958 15 C -0.531 4.531 16 H 0.057 0.943 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.960 3.040 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.278 1.278 23 H 0.019 0.981 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.032 0.968 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.021 0.979 40 H 0.062 0.938 41 H -0.008 1.008 42 H -0.002 1.002 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.825 15.448 3.859 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.281 5.281 3 C -0.072 4.072 4 C -0.071 4.071 5 N -0.264 5.264 6 C -0.033 4.033 7 C -0.199 4.199 8 C -0.153 4.153 9 C -0.155 4.155 10 C -0.152 4.152 11 C -0.037 4.037 12 C -0.001 4.001 13 H 0.037 0.963 14 C 0.004 3.996 15 C -0.570 4.570 16 H 0.075 0.925 17 C -0.193 4.193 18 N -0.571 5.571 19 Si 0.785 3.215 20 H -0.187 1.187 21 H -0.204 1.204 22 H -0.204 1.204 23 H 0.037 0.963 24 H 0.070 0.930 25 H 0.107 0.893 26 H 0.050 0.950 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.039 0.961 40 H 0.081 0.919 41 H 0.010 0.990 42 H 0.016 0.984 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.748 15.308 3.889 18.560 hybrid contribution -0.253 -1.294 -0.721 1.503 sum 9.495 14.014 3.168 17.222 Atomic orbital electron populations 1.22304 0.87176 1.01840 1.00321 1.62181 1.08374 1.14083 1.43415 1.22263 0.95086 0.88784 1.01076 1.22255 0.93801 0.99182 0.91821 1.62471 1.07702 1.13289 1.42891 1.22473 0.86052 0.97756 0.97015 1.23015 0.98876 0.99396 0.98563 1.22410 0.96425 0.95112 1.01353 1.22356 0.99872 0.96474 0.96815 1.22228 0.99721 0.94291 0.98931 1.21763 0.93674 0.88833 0.99436 1.21525 0.94201 0.94546 0.89835 0.96306 1.18974 0.94686 0.90448 0.95480 1.21541 1.35709 0.95022 1.04682 0.92506 1.25875 0.95188 0.98713 0.99539 1.70111 1.41284 1.10613 1.35130 0.85472 0.78183 0.78494 0.79372 1.18743 1.20377 1.20356 0.96259 0.93022 0.89339 0.95008 0.88428 0.87880 0.94575 0.91107 0.92235 0.93196 0.90917 0.91080 0.89959 0.91383 0.90719 0.90651 0.96114 0.91910 0.98950 0.98371 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 9.06 127.69 1.16 2.27 16 2 N -0.56 -21.15 4.78 -896.55 -4.29 -25.44 16 3 C 0.06 1.66 5.61 86.31 0.48 2.14 16 4 C 0.06 1.59 4.95 86.30 0.43 2.02 16 5 N -0.54 -17.54 4.71 -866.15 -4.08 -21.62 16 6 C 0.08 2.05 3.06 45.64 0.14 2.19 16 7 C -0.16 -4.16 5.12 31.67 0.16 -4.00 16 8 C -0.12 -2.20 6.91 31.89 0.22 -1.98 16 9 C -0.12 -1.95 6.83 31.67 0.22 -1.73 16 10 C -0.11 -2.30 5.91 31.32 0.19 -2.12 16 11 C 0.09 3.75 4.39 86.31 0.38 4.13 16 12 C 0.11 4.80 1.98 44.92 0.09 4.89 16 13 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 14 C 0.04 2.29 4.27 29.85 0.13 2.41 16 15 C -0.53 -30.60 8.33 25.60 0.21 -30.39 16 16 H 0.06 3.20 7.25 -2.91 -0.02 3.18 16 17 C 0.00 0.27 5.46 84.65 0.46 0.74 16 18 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 19 Si 0.96 44.92 29.54 68.60 2.03 46.94 16 20 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 24 H 0.05 2.09 6.31 -2.39 -0.02 2.07 16 25 H 0.09 2.47 8.08 -2.39 -0.02 2.45 16 26 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.10 2.35 8.10 -2.39 -0.02 2.33 16 28 H 0.10 2.29 6.01 -2.39 -0.01 2.28 16 29 H 0.04 1.07 6.12 -2.39 -0.01 1.06 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 1.71 5.63 -2.39 -0.01 1.70 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.53 6.11 -2.39 -0.01 1.51 16 39 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 40 H 0.06 2.81 7.11 -2.39 -0.02 2.79 16 41 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H 0.00 -0.11 6.15 -2.39 -0.01 -0.12 16 43 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -64.77 317.46 -0.84 -65.61 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.96 Total: 10.89 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 4.26 Total: -19.42 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -8.09 Total: -104.02 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -64.77 -0.84 -65.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260955869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.073 kcal (2) G-P(sol) polarization free energy of solvation -64.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds