Wall clock time and date at job start Mon Mar 30 2020 04:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46952 * 111.00340 * 2 1 4 4 C 1.53047 * 109.36619 * 183.18821 * 3 2 1 5 5 N 1.46954 * 109.36415 * 301.59863 * 4 3 2 6 6 C 1.46899 * 111.00154 * 183.18707 * 5 4 3 7 7 C 1.54265 * 110.03789 * 174.52644 * 6 5 4 8 8 C 1.54961 * 104.16506 * 217.13964 * 7 6 5 9 9 C 1.54890 * 102.77496 * 37.88533 * 8 7 6 10 10 C 1.53877 * 110.03124 * 57.30928 * 6 5 4 11 11 C 1.46959 * 110.88195 * 59.32527 * 5 4 3 12 12 C 1.46956 * 110.99926 * 123.80566 * 2 1 3 13 13 H 1.09001 * 109.48693 * 296.77192 * 12 2 1 14 14 C 1.52994 * 109.51083 * 56.82901 * 12 2 1 15 15 C 1.50700 * 109.47474 * 185.33777 * 14 12 2 16 16 H 1.08008 * 119.99905 * 356.56157 * 15 14 12 17 17 C 1.37880 * 120.00064 * 176.55510 * 15 14 12 18 18 N 1.31507 * 120.00283 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99712 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47240 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46963 * 119.99875 * 19 17 15 22 22 H 1.48499 * 109.47363 * 240.00113 * 19 17 15 23 23 H 1.08998 * 109.46863 * 289.64704 * 1 2 3 24 24 H 1.09001 * 109.47011 * 49.64838 * 1 2 3 25 25 H 1.09004 * 109.47383 * 169.64660 * 1 2 3 26 26 H 1.09001 * 109.48634 * 63.21991 * 3 2 1 27 27 H 1.09004 * 109.50624 * 303.17031 * 3 2 1 28 28 H 1.09004 * 109.48597 * 181.63551 * 4 3 2 29 29 H 1.08999 * 109.49109 * 61.57194 * 4 3 2 30 30 H 1.09008 * 110.02072 * 295.92173 * 6 5 4 31 31 H 1.09003 * 110.48176 * 335.79069 * 7 6 5 32 32 H 1.09002 * 110.48677 * 98.42548 * 7 6 5 33 33 H 1.09004 * 110.72132 * 279.57657 * 8 7 6 34 34 H 1.08990 * 110.92411 * 156.29503 * 8 7 6 35 35 H 1.09007 * 110.48495 * 203.40684 * 9 8 7 36 36 H 1.08999 * 110.48540 * 80.76435 * 9 8 7 37 37 H 1.08999 * 110.03353 * 238.57237 * 10 6 5 38 38 H 1.09001 * 110.02937 * 359.95448 * 10 6 5 39 39 H 1.08998 * 109.49184 * 180.71265 * 11 5 4 40 40 H 1.09002 * 109.49211 * 60.63886 * 11 5 4 41 41 H 1.08995 * 109.47376 * 305.34381 * 14 12 2 42 42 H 1.09003 * 109.47193 * 65.33875 * 14 12 2 43 43 H 0.96996 * 120.00372 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0501 0.5658 1.0598 6 6 5.5191 0.5657 1.0598 7 6 6.0476 -0.1220 2.3355 8 6 7.3028 0.7021 2.7183 9 6 6.8766 2.1523 2.3802 10 6 6.0462 2.0110 1.0878 11 6 3.5235 -0.8063 1.0597 12 6 1.9956 -0.7633 1.1400 13 1 1.6938 -0.2822 2.0703 14 6 1.4421 -2.1891 1.0997 15 6 1.8762 -2.9317 2.3371 16 1 2.5315 -2.4548 3.0511 17 6 1.4368 -4.2198 2.5578 18 7 0.6393 -4.8006 1.6884 19 14 1.9744 -5.1400 4.0920 20 1 2.8642 -4.2714 4.9040 21 1 0.7790 -5.5089 4.8923 22 1 2.7068 -6.3709 3.6999 23 1 -0.3633 0.3455 0.9678 24 1 -0.3633 0.6654 -0.7832 25 1 -0.3634 -1.0109 -0.1847 26 1 1.6938 1.8773 0.9174 27 1 1.6014 1.9132 -0.8600 28 1 3.9178 2.3448 -0.0512 29 1 3.8254 0.8479 -1.0106 30 1 5.8923 0.0492 0.1753 31 1 5.3033 -0.0748 3.1305 32 1 6.3188 -1.1569 2.1267 33 1 8.1601 0.4012 2.1162 34 1 7.5247 0.6025 3.7807 35 1 7.7529 2.7763 2.2043 36 1 6.2663 2.5674 3.1823 37 1 6.6758 2.1958 0.2174 38 1 5.2120 2.7125 1.1005 39 1 3.9178 -1.3472 1.9200 40 1 3.8253 -1.3117 0.1423 41 1 0.3534 -2.1552 1.0595 42 1 1.8225 -2.7017 0.2162 43 1 0.3304 -5.7069 1.8434 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260955870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:06 Heat of formation + Delta-G solvation = -2.772021 kcal Electronic energy + Delta-G solvation = -19824.548676 eV Core-core repulsion = 17096.814168 eV Total energy + Delta-G solvation = -2727.734508 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.44753 -37.44011 -34.13622 -33.23855 -31.19814 -28.93327 -28.63166 -26.95568 -25.68803 -23.74830 -22.85812 -21.23893 -20.30182 -19.19064 -18.88494 -16.55653 -16.24868 -15.52014 -14.71862 -14.52648 -14.40958 -14.26264 -13.83464 -13.50303 -13.23575 -13.19175 -12.18786 -12.04499 -11.71166 -11.57547 -11.45385 -11.28497 -11.02004 -10.98353 -10.86899 -10.80210 -10.66698 -10.60073 -10.45334 -10.38116 -10.11868 -9.82059 -9.18498 -9.02853 -8.33041 -7.92281 -7.63105 -5.99076 -4.00641 3.31522 3.39349 3.43240 4.23445 4.42212 4.61675 4.66390 4.76849 5.02753 5.35048 5.37576 5.45630 5.52091 5.56461 5.63159 5.67298 5.73254 5.80489 5.85154 5.95336 5.95473 5.98051 6.03113 6.10477 6.15494 6.23417 6.26019 6.31403 6.36871 6.49589 6.49622 6.58954 6.79198 6.96036 7.45646 7.51637 7.61166 7.65510 7.84994 7.88542 8.08678 8.44700 9.05856 9.62876 11.12419 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.007189 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.658880 B = 3894.175321 C = 5280.242678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.544 5.544 3 C 0.058 3.942 4 C 0.057 3.943 5 N -0.537 5.537 6 C 0.081 3.919 7 C -0.118 4.118 8 C -0.123 4.123 9 C -0.119 4.119 10 C -0.120 4.120 11 C 0.074 3.926 12 C 0.095 3.905 13 H 0.036 0.964 14 C 0.030 3.970 15 C -0.516 4.516 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 H 0.020 0.980 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.033 0.967 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.033 0.967 41 H 0.025 0.975 42 H 0.020 0.980 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.853 13.229 -1.749 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.269 5.269 3 C -0.071 4.071 4 C -0.072 4.072 5 N -0.262 5.262 6 C -0.027 4.027 7 C -0.156 4.156 8 C -0.161 4.161 9 C -0.157 4.157 10 C -0.158 4.158 11 C -0.053 4.053 12 C -0.013 4.013 13 H 0.054 0.946 14 C -0.007 4.007 15 C -0.555 4.555 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.039 0.961 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.052 0.948 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.757 13.069 -1.792 15.833 hybrid contribution 0.164 -0.646 0.749 1.003 sum 8.922 12.423 -1.042 15.330 Atomic orbital electron populations 1.22310 0.87804 1.02694 0.99026 1.62224 1.07597 1.11985 1.45129 1.22093 0.94318 0.90834 0.99862 1.22141 0.94711 0.98045 0.92270 1.62409 1.06124 1.15744 1.41942 1.22235 0.87779 0.95452 0.97245 1.22454 0.97001 0.98436 0.97678 1.22473 0.97636 0.95223 1.00798 1.22293 0.98933 0.96802 0.97668 1.22275 0.99295 0.96711 0.97523 1.22192 0.95047 0.86855 1.01250 1.21900 0.92962 0.96987 0.89418 0.94570 1.19181 0.96547 0.87833 0.97186 1.21236 1.29331 0.98606 1.06318 0.92511 1.24981 0.95150 0.97654 0.96471 1.69972 1.34043 1.13842 1.35451 0.86587 0.78467 0.79873 0.83404 1.19688 1.21078 1.21058 0.96094 0.92873 0.90354 0.94847 0.91380 0.90925 0.94649 0.94423 0.90154 0.91731 0.91932 0.91705 0.92261 0.91568 0.92348 0.90772 0.89377 0.94847 0.95663 0.96182 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 8.98 60.06 0.54 1.07 16 2 N -0.54 -10.42 4.78 -234.73 -1.12 -11.54 16 3 C 0.06 0.92 5.61 -3.77 -0.02 0.90 16 4 C 0.06 0.86 5.30 -3.77 -0.02 0.84 16 5 N -0.54 -8.93 4.49 -225.14 -1.01 -9.94 16 6 C 0.08 1.16 2.66 -66.59 -0.18 0.99 16 7 C -0.12 -1.64 5.20 -25.03 -0.13 -1.77 16 8 C -0.12 -1.38 6.91 -24.70 -0.17 -1.55 16 9 C -0.12 -1.27 6.83 -25.07 -0.17 -1.44 16 10 C -0.12 -1.41 5.91 -25.61 -0.15 -1.56 16 11 C 0.07 1.47 4.48 -3.76 -0.02 1.45 16 12 C 0.09 2.06 1.96 -67.66 -0.13 1.93 16 13 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 14 C 0.03 0.78 4.28 -27.89 -0.12 0.66 16 15 C -0.52 -14.35 8.49 -34.44 -0.29 -14.64 16 16 H 0.06 1.54 6.96 -52.48 -0.37 1.18 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 24 H 0.05 0.79 8.02 -51.93 -0.42 0.37 16 25 H 0.08 1.53 6.52 -51.93 -0.34 1.19 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 28 H 0.07 0.93 6.07 -51.93 -0.32 0.62 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.08 1.25 7.84 -51.93 -0.41 0.84 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.89 6.19 -51.93 -0.32 0.57 16 39 H 0.09 1.86 5.75 -51.93 -0.30 1.56 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.03 0.69 6.21 -51.93 -0.32 0.37 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 321.26 15.07 4.84 4.84 Total: -1.00 -29.24 321.26 -10.37 -39.61 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.83 Total: -2.00 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -0.96 Total: -11.57 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -1.40 Total: -47.44 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.24 -10.37 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260955870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.841 kcal (2) G-P(sol) polarization free energy of solvation -29.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds