Wall clock time and date at job start Mon Mar 30 2020 04:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46952 * 111.00340 * 2 1 4 4 C 1.53047 * 109.36619 * 183.18821 * 3 2 1 5 5 N 1.46954 * 109.36415 * 301.59863 * 4 3 2 6 6 C 1.46899 * 111.00154 * 183.18707 * 5 4 3 7 7 C 1.54265 * 110.03789 * 174.52644 * 6 5 4 8 8 C 1.54961 * 104.16506 * 217.13964 * 7 6 5 9 9 C 1.54890 * 102.77496 * 37.88533 * 8 7 6 10 10 C 1.53877 * 110.03124 * 57.30928 * 6 5 4 11 11 C 1.46959 * 110.88195 * 59.32527 * 5 4 3 12 12 C 1.46956 * 110.99926 * 123.80566 * 2 1 3 13 13 H 1.09001 * 109.48693 * 296.77192 * 12 2 1 14 14 C 1.52994 * 109.51083 * 56.82901 * 12 2 1 15 15 C 1.50700 * 109.47474 * 185.33777 * 14 12 2 16 16 H 1.08008 * 119.99905 * 356.56157 * 15 14 12 17 17 C 1.37880 * 120.00064 * 176.55510 * 15 14 12 18 18 N 1.31507 * 120.00283 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99712 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47240 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46963 * 119.99875 * 19 17 15 22 22 H 1.48499 * 109.47363 * 240.00113 * 19 17 15 23 23 H 1.08998 * 109.46863 * 289.64704 * 1 2 3 24 24 H 1.09001 * 109.47011 * 49.64838 * 1 2 3 25 25 H 1.09004 * 109.47383 * 169.64660 * 1 2 3 26 26 H 1.09001 * 109.48634 * 63.21991 * 3 2 1 27 27 H 1.09004 * 109.50624 * 303.17031 * 3 2 1 28 28 H 1.09004 * 109.48597 * 181.63551 * 4 3 2 29 29 H 1.08999 * 109.49109 * 61.57194 * 4 3 2 30 30 H 1.09008 * 110.02072 * 295.92173 * 6 5 4 31 31 H 1.09003 * 110.48176 * 335.79069 * 7 6 5 32 32 H 1.09002 * 110.48677 * 98.42548 * 7 6 5 33 33 H 1.09004 * 110.72132 * 279.57657 * 8 7 6 34 34 H 1.08990 * 110.92411 * 156.29503 * 8 7 6 35 35 H 1.09007 * 110.48495 * 203.40684 * 9 8 7 36 36 H 1.08999 * 110.48540 * 80.76435 * 9 8 7 37 37 H 1.08999 * 110.03353 * 238.57237 * 10 6 5 38 38 H 1.09001 * 110.02937 * 359.95448 * 10 6 5 39 39 H 1.08998 * 109.49184 * 180.71265 * 11 5 4 40 40 H 1.09002 * 109.49211 * 60.63886 * 11 5 4 41 41 H 1.08995 * 109.47376 * 305.34381 * 14 12 2 42 42 H 1.09003 * 109.47193 * 65.33875 * 14 12 2 43 43 H 0.96996 * 120.00372 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0501 0.5658 1.0598 6 6 5.5191 0.5657 1.0598 7 6 6.0476 -0.1220 2.3355 8 6 7.3028 0.7021 2.7183 9 6 6.8766 2.1523 2.3802 10 6 6.0462 2.0110 1.0878 11 6 3.5235 -0.8063 1.0597 12 6 1.9956 -0.7633 1.1400 13 1 1.6938 -0.2822 2.0703 14 6 1.4421 -2.1891 1.0997 15 6 1.8762 -2.9317 2.3371 16 1 2.5315 -2.4548 3.0511 17 6 1.4368 -4.2198 2.5578 18 7 0.6393 -4.8006 1.6884 19 14 1.9744 -5.1400 4.0920 20 1 2.8642 -4.2714 4.9040 21 1 0.7790 -5.5089 4.8923 22 1 2.7068 -6.3709 3.6999 23 1 -0.3633 0.3455 0.9678 24 1 -0.3633 0.6654 -0.7832 25 1 -0.3634 -1.0109 -0.1847 26 1 1.6938 1.8773 0.9174 27 1 1.6014 1.9132 -0.8600 28 1 3.9178 2.3448 -0.0512 29 1 3.8254 0.8479 -1.0106 30 1 5.8923 0.0492 0.1753 31 1 5.3033 -0.0748 3.1305 32 1 6.3188 -1.1569 2.1267 33 1 8.1601 0.4012 2.1162 34 1 7.5247 0.6025 3.7807 35 1 7.7529 2.7763 2.2043 36 1 6.2663 2.5674 3.1823 37 1 6.6758 2.1958 0.2174 38 1 5.2120 2.7125 1.1005 39 1 3.9178 -1.3472 1.9200 40 1 3.8253 -1.3117 0.1423 41 1 0.3534 -2.1552 1.0595 42 1 1.8225 -2.7017 0.2162 43 1 0.3304 -5.7069 1.8434 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260955870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:06 Heat of formation + Delta-G solvation = -21.751378 kcal Electronic energy + Delta-G solvation = -19825.371683 eV Core-core repulsion = 17096.814168 eV Total energy + Delta-G solvation = -2728.557515 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.80086 -38.70738 -35.58802 -35.11951 -33.00788 -30.24084 -29.73949 -28.63124 -27.02622 -25.60500 -24.32712 -22.77551 -21.30087 -20.53233 -20.34063 -18.60972 -17.59262 -16.65408 -16.50288 -16.08117 -15.92109 -15.63514 -15.31133 -14.85839 -14.55408 -14.19214 -14.05858 -13.86395 -13.39362 -13.04045 -12.93166 -12.63139 -12.61843 -12.54136 -12.25586 -12.08465 -11.91381 -11.81896 -11.73172 -11.65330 -11.56387 -11.33507 -11.10445 -10.96983 -10.53790 -9.31739 -9.15925 -8.19844 -6.29503 1.38555 1.39026 1.52136 2.39634 2.93156 3.09040 3.14937 3.65175 3.78484 3.99323 4.11030 4.16274 4.24659 4.36684 4.42163 4.49527 4.58435 4.62098 4.64875 4.66610 4.76040 4.78204 4.81782 4.92333 4.94779 5.01216 5.02184 5.07499 5.10656 5.20188 5.26520 5.29337 5.33956 5.45598 5.52741 5.64511 5.75445 6.03848 6.10953 6.25854 6.34023 6.38635 6.85549 7.38823 8.92621 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.007189 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.658880 B = 3894.175321 C = 5280.242678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.557 5.557 3 C 0.057 3.943 4 C 0.056 3.944 5 N -0.539 5.539 6 C 0.076 3.924 7 C -0.122 4.122 8 C -0.117 4.117 9 C -0.115 4.115 10 C -0.114 4.114 11 C 0.089 3.911 12 C 0.108 3.892 13 H 0.020 0.980 14 C 0.042 3.958 15 C -0.531 4.531 16 H 0.058 0.942 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.960 3.040 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.278 1.278 23 H 0.018 0.982 24 H 0.089 0.911 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.029 0.971 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.014 0.986 41 H 0.002 0.998 42 H -0.013 1.013 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.404 15.268 -1.355 18.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.282 5.282 3 C -0.071 4.071 4 C -0.071 4.071 5 N -0.264 5.264 6 C -0.032 4.032 7 C -0.160 4.160 8 C -0.155 4.155 9 C -0.153 4.153 10 C -0.151 4.151 11 C -0.039 4.039 12 C 0.000 4.000 13 H 0.038 0.962 14 C 0.004 3.996 15 C -0.570 4.570 16 H 0.077 0.923 17 C -0.194 4.194 18 N -0.572 5.572 19 Si 0.784 3.216 20 H -0.186 1.186 21 H -0.204 1.204 22 H -0.204 1.204 23 H 0.036 0.964 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.032 0.968 41 H 0.020 0.980 42 H 0.005 0.995 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.317 15.135 -1.402 18.370 hybrid contribution -0.346 -1.265 0.568 1.429 sum 9.970 13.870 -0.834 17.102 Atomic orbital electron populations 1.22282 0.87138 1.01919 1.00141 1.62184 1.08402 1.14141 1.43470 1.22249 0.94882 0.88768 1.01175 1.22262 0.94248 0.99370 0.91244 1.62414 1.07801 1.13293 1.42914 1.22390 0.86129 0.97686 0.96966 1.22454 0.98046 0.98522 0.97012 1.22459 0.96404 0.95093 1.01532 1.22289 0.99581 0.96515 0.96870 1.22251 0.99685 0.94210 0.98975 1.21832 0.93810 0.88910 0.99359 1.21526 0.94087 0.94592 0.89837 0.96211 1.18968 0.95014 0.90400 0.95217 1.21559 1.29305 0.99213 1.06888 0.92344 1.25886 0.95062 0.98620 0.99815 1.70102 1.35186 1.14362 1.37514 0.85476 0.78303 0.78473 0.79307 1.18635 1.20374 1.20374 0.96376 0.89247 0.93121 0.94906 0.88294 0.87577 0.95240 0.95115 0.92288 0.92939 0.90713 0.90951 0.89892 0.91934 0.90528 0.90645 0.91223 0.96821 0.97965 0.99475 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.18 8.98 127.69 1.15 2.33 16 2 N -0.56 -21.34 4.78 -896.55 -4.29 -25.63 16 3 C 0.06 1.70 5.61 86.31 0.48 2.18 16 4 C 0.06 1.59 5.30 86.31 0.46 2.05 16 5 N -0.54 -17.61 4.49 -866.22 -3.89 -21.50 16 6 C 0.08 2.10 2.66 45.64 0.12 2.22 16 7 C -0.12 -3.37 5.20 31.69 0.16 -3.21 16 8 C -0.12 -2.37 6.91 31.91 0.22 -2.15 16 9 C -0.11 -2.08 6.83 31.67 0.22 -1.87 16 10 C -0.11 -2.31 5.91 31.32 0.19 -2.13 16 11 C 0.09 3.67 4.48 86.31 0.39 4.06 16 12 C 0.11 4.85 1.96 44.92 0.09 4.94 16 13 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 14 C 0.04 2.29 4.28 29.85 0.13 2.42 16 15 C -0.53 -30.62 8.49 25.60 0.22 -30.40 16 16 H 0.06 3.28 6.96 -2.91 -0.02 3.26 16 17 C 0.00 0.23 5.46 84.66 0.46 0.70 16 18 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 19 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H 0.02 0.64 8.12 -2.39 -0.02 0.62 16 24 H 0.09 2.50 8.02 -2.39 -0.02 2.48 16 25 H 0.05 2.06 6.52 -2.39 -0.02 2.04 16 26 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.10 2.38 8.07 -2.38 -0.02 2.36 16 28 H 0.11 2.32 6.07 -2.38 -0.01 2.31 16 29 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.06 1.87 7.84 -2.39 -0.02 1.85 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.54 6.19 -2.39 -0.01 1.52 16 39 H 0.07 3.08 5.75 -2.39 -0.01 3.07 16 40 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.00 0.12 6.21 -2.39 -0.01 0.11 16 42 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 43 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -65.22 321.26 -0.64 -65.86 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.95 Total: 10.24 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 4.28 Total: -18.86 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -7.89 Total: -104.16 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.22 -0.64 -65.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260955870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.108 kcal (2) G-P(sol) polarization free energy of solvation -65.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds