Wall clock time and date at job start Mon Mar 30 2020 03:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47963 * 110.99889 * 2 1 4 4 C 1.53936 * 86.17987 * 222.41556 * 3 2 1 5 5 N 1.46896 * 113.73442 * 138.07439 * 4 3 2 6 6 C 1.46845 * 111.00239 * 301.90149 * 5 4 3 7 7 C 1.53040 * 109.52426 * 174.15771 * 6 5 4 8 8 C 1.53116 * 109.27993 * 59.18026 * 7 6 5 9 9 C 1.53128 * 109.15965 * 302.34603 * 8 7 6 10 10 C 1.46848 * 111.00524 * 177.68681 * 5 4 3 11 11 H 1.09006 * 109.45087 * 65.82739 * 10 5 4 12 12 C 1.52997 * 109.46258 * 305.86307 * 10 5 4 13 13 C 1.53006 * 109.46898 * 303.05838 * 12 10 5 14 14 C 1.50701 * 109.47192 * 174.70217 * 13 12 10 15 15 H 1.08005 * 119.99974 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99927 * 180.27579 * 14 13 12 17 17 N 1.31516 * 119.99786 * 179.72351 * 16 14 13 18 18 Si 1.86790 * 119.99962 * 359.71835 * 16 14 13 19 19 H 1.48509 * 109.47105 * 90.00437 * 18 16 14 20 20 H 1.48501 * 109.47008 * 209.99983 * 18 16 14 21 21 H 1.48493 * 109.47403 * 330.00333 * 18 16 14 22 22 C 1.48188 * 111.06937 * 260.56620 * 2 1 3 23 23 H 1.08996 * 109.47029 * 60.00235 * 1 2 3 24 24 H 1.08997 * 109.47029 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46770 * 299.99981 * 1 2 3 26 26 H 1.08997 * 113.76314 * 108.09979 * 3 2 1 27 27 H 1.08998 * 113.85835 * 336.74647 * 3 2 1 28 28 H 1.08996 * 113.73360 * 269.25785 * 4 3 2 29 29 H 1.08997 * 109.46342 * 54.14406 * 6 5 4 30 30 H 1.08996 * 109.45641 * 294.16544 * 6 5 4 31 31 H 1.08999 * 109.50290 * 299.23903 * 7 6 5 32 32 H 1.09000 * 109.50595 * 179.11854 * 7 6 5 33 33 H 1.08991 * 109.52622 * 182.44198 * 8 7 6 34 34 H 1.09004 * 109.52332 * 62.24577 * 8 7 6 35 35 H 1.08994 * 109.50130 * 297.71327 * 9 8 7 36 36 H 1.08998 * 109.50354 * 177.59303 * 9 8 7 37 37 H 1.09000 * 109.47452 * 183.05297 * 12 10 5 38 38 H 1.09007 * 109.47285 * 63.05350 * 12 10 5 39 39 H 1.08996 * 109.46983 * 54.70032 * 13 12 10 40 40 H 1.09003 * 109.46652 * 294.69733 * 13 12 10 41 41 H 0.97002 * 120.00117 * 180.02562 * 17 16 14 42 42 H 1.08992 * 113.76260 * 23.23771 * 22 2 1 43 43 H 1.08999 * 113.82048 * 251.80678 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3814 0.0000 4 6 3.0211 0.8793 -1.0360 5 7 3.2515 1.8179 -2.1422 6 6 1.9996 2.1145 -2.8501 7 6 2.2498 3.2016 -3.8979 8 6 3.3139 2.7161 -4.8860 9 6 4.5918 2.3680 -4.1175 10 6 4.2738 1.3052 -3.0634 11 1 3.9015 0.4062 -3.5547 12 6 5.5438 0.9687 -2.2794 13 6 6.0233 2.2120 -1.5273 14 6 7.1966 1.8494 -0.6539 15 1 7.5633 0.8337 -0.6365 16 6 7.7979 2.8129 0.1278 17 7 8.8184 2.4953 0.8942 18 14 7.1632 4.5695 0.0981 19 1 6.1152 4.7348 1.1373 20 1 8.2834 5.5052 0.3717 21 1 6.5864 4.8649 -1.2379 22 6 2.0018 -0.2267 -1.3641 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.4460 1.6803 0.9482 27 1 1.3022 2.1212 -0.3936 28 1 3.9458 0.5068 -0.5953 29 1 1.2527 2.4628 -2.1368 30 1 1.6384 1.2118 -3.3426 31 1 2.5981 4.1091 -3.4048 32 1 1.3239 3.4104 -4.4339 33 1 3.5266 3.5038 -5.6086 34 1 2.9500 1.8307 -5.4075 35 1 4.9769 3.2624 -3.6278 36 1 5.3392 1.9812 -4.8103 37 1 6.3205 0.6395 -2.9696 38 1 5.3303 0.1725 -1.5661 39 1 5.2135 2.5962 -0.9071 40 1 6.3260 2.9757 -2.2438 41 1 9.2412 3.1731 1.4444 42 1 1.3043 0.0404 -2.1580 43 1 2.4505 -1.2101 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260963867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:23 Heat of formation + Delta-G solvation = 35.005516 kcal Electronic energy + Delta-G solvation = -20120.696882 eV Core-core repulsion = 17394.600531 eV Total energy + Delta-G solvation = -2726.096351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.63092 -37.95107 -34.05469 -32.82245 -31.96697 -29.25960 -29.04424 -26.09350 -25.52871 -24.36727 -22.85099 -21.80344 -20.52596 -19.48678 -18.17834 -16.74491 -16.33130 -15.86517 -15.03129 -14.81646 -14.28717 -14.25534 -13.94166 -13.71738 -13.34803 -12.81752 -12.63339 -12.54833 -12.23884 -12.16290 -11.90481 -11.58897 -11.33228 -11.04613 -10.94057 -10.88269 -10.67235 -10.50822 -10.07469 -10.01172 -9.84734 -9.45621 -9.38507 -8.95722 -8.80683 -8.40913 -7.88468 -5.93210 -3.89257 3.40658 3.47062 3.53581 3.82390 4.24536 4.56791 4.68546 4.84730 4.92026 5.05103 5.09830 5.17189 5.25444 5.32762 5.39977 5.43093 5.45850 5.59039 5.67005 5.72602 5.75513 5.79318 5.84031 5.93250 5.99026 6.04633 6.09945 6.27576 6.29042 6.32967 6.37230 6.54361 6.64206 6.69657 7.03126 7.08080 7.38519 7.49123 7.55638 7.70386 7.95575 8.66510 9.13101 9.71082 11.20648 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017934 B = 0.007743 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.943484 B = 3615.146061 C = 4389.967896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.480 5.480 3 C 0.005 3.995 4 C 0.064 3.936 5 N -0.513 5.513 6 C 0.051 3.949 7 C -0.116 4.116 8 C -0.120 4.120 9 C -0.115 4.115 10 C 0.090 3.910 11 H 0.029 0.971 12 C -0.102 4.102 13 C -0.005 4.005 14 C -0.517 4.517 15 H 0.067 0.933 16 C 0.065 3.935 17 N -0.909 5.909 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.292 1.292 21 H -0.264 1.264 22 C -0.041 4.041 23 H 0.029 0.971 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.130 0.870 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.028 0.972 40 H 0.013 0.987 41 H 0.260 0.740 42 H 0.072 0.928 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.008 -1.339 -8.757 19.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.203 5.203 3 C -0.124 4.124 4 C -0.045 4.045 5 N -0.237 5.237 6 C -0.077 4.077 7 C -0.153 4.153 8 C -0.158 4.158 9 C -0.152 4.152 10 C -0.018 4.018 11 H 0.047 0.953 12 C -0.139 4.139 13 C -0.043 4.043 14 C -0.555 4.555 15 H 0.085 0.915 16 C -0.135 4.135 17 N -0.549 5.549 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.189 1.189 22 C -0.172 4.172 23 H 0.048 0.952 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.088 0.912 28 H 0.148 0.852 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.046 0.954 40 H 0.031 0.969 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.549 -1.268 -7.909 18.386 hybrid contribution -0.979 0.683 -0.826 1.451 sum -17.528 -0.585 -8.735 19.593 Atomic orbital electron populations 1.22818 0.90159 1.01975 1.00695 1.68440 1.08429 1.19209 1.24177 1.24166 0.96762 0.90700 1.00789 1.23776 0.98630 0.89935 0.92158 1.61820 1.07530 1.43814 1.10505 1.22187 0.92370 0.97271 0.95875 1.21570 0.98407 0.99018 0.96352 1.21594 0.96196 1.00382 0.97600 1.21689 0.96501 1.00343 0.96708 1.21682 0.92938 0.94734 0.92420 0.95341 1.21631 0.93637 1.00449 0.98213 1.19503 0.96247 0.93157 0.95352 1.21267 1.13479 0.97420 1.23381 0.91463 1.25009 0.94725 0.98745 0.95040 1.69933 1.23093 1.34034 1.27802 0.86764 0.78249 0.85089 0.79090 1.20405 1.21889 1.18897 1.24833 0.99110 1.01908 0.91316 0.95211 0.91477 0.91478 0.88741 0.91162 0.85220 0.91369 0.95154 0.91018 0.92237 0.92194 0.92836 0.90201 0.91735 0.92578 0.92624 0.95357 0.96925 0.92992 0.91006 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.65 60.07 0.58 0.50 16 2 N -0.48 -6.55 6.55 -246.53 -1.62 -8.17 16 3 C 0.00 0.07 7.47 -2.76 -0.02 0.05 16 4 C 0.06 0.99 3.38 -69.40 -0.23 0.76 16 5 N -0.51 -7.93 3.70 -220.16 -0.81 -8.74 16 6 C 0.05 0.64 4.39 -3.83 -0.02 0.63 16 7 C -0.12 -1.37 6.09 -26.65 -0.16 -1.54 16 8 C -0.12 -1.46 6.00 -26.60 -0.16 -1.62 16 9 C -0.11 -1.71 5.11 -26.65 -0.14 -1.85 16 10 C 0.09 1.43 2.12 -67.73 -0.14 1.29 16 11 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 12 C -0.10 -1.98 4.37 -26.73 -0.12 -2.10 16 13 C -0.01 -0.12 3.47 -27.88 -0.10 -0.22 16 14 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 15 H 0.07 2.08 7.99 -52.48 -0.42 1.66 16 16 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.58 13.96 55.43 0.77 -27.80 16 18 Si 0.88 22.38 27.46 -169.99 -4.67 17.72 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.26 -6.48 6.55 56.52 0.37 -6.11 16 22 C -0.04 -0.54 7.28 -2.63 -0.02 -0.56 16 23 H 0.03 0.30 7.63 -51.93 -0.40 -0.10 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.07 0.91 5.97 -51.93 -0.31 0.60 16 28 H 0.13 2.35 5.82 -51.93 -0.30 2.05 16 29 H 0.07 0.82 6.06 -51.93 -0.31 0.51 16 30 H 0.03 0.37 6.33 -51.93 -0.33 0.04 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.38 6.59 -51.93 -0.34 1.03 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.10 6.24 -51.92 -0.32 0.78 16 39 H 0.03 0.68 6.50 -51.93 -0.34 0.34 16 40 H 0.01 0.30 5.83 -51.93 -0.30 0.00 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 42 H 0.07 0.87 5.11 -51.93 -0.27 0.60 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 314.86 15.07 4.74 4.74 Total: -1.00 -30.59 314.86 -10.00 -40.59 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.46 Total: -0.33 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -0.96 Total: -18.01 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -1.66 Total: -44.71 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.72 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.59 -10.00 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.597 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds