Wall clock time and date at job start Mon Mar 30 2020 03:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47958 * 111.00239 * 2 1 4 4 C 1.53944 * 86.18218 * 222.41858 * 3 2 1 5 5 N 1.46892 * 113.73396 * 138.07835 * 4 3 2 6 6 C 1.46844 * 111.00151 * 46.84316 * 5 4 3 7 7 C 1.53039 * 109.52493 * 185.84157 * 6 5 4 8 8 C 1.53123 * 109.27244 * 300.81751 * 7 6 5 9 9 C 1.53119 * 109.16264 * 57.65852 * 8 7 6 10 10 C 1.46846 * 110.99824 * 171.05119 * 5 4 3 11 11 H 1.08998 * 109.46609 * 294.16306 * 10 5 4 12 12 C 1.53001 * 109.46460 * 54.14755 * 10 5 4 13 13 C 1.52997 * 109.47258 * 185.11620 * 12 10 5 14 14 C 1.50698 * 109.47117 * 184.33742 * 13 12 10 15 15 H 1.08005 * 119.99942 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00293 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00180 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99837 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47517 * 89.99331 * 18 16 14 20 20 H 1.48498 * 109.46950 * 209.99652 * 18 16 14 21 21 H 1.48505 * 109.47043 * 329.99208 * 18 16 14 22 22 C 1.47963 * 110.99967 * 260.63977 * 2 1 3 23 23 H 1.09002 * 109.46844 * 59.99810 * 1 2 3 24 24 H 1.08994 * 109.47375 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46959 * 300.00360 * 1 2 3 26 26 H 1.08995 * 113.76166 * 108.10274 * 3 2 1 27 27 H 1.09001 * 113.75887 * 336.73103 * 3 2 1 28 28 H 1.09002 * 113.72762 * 269.36337 * 4 3 2 29 29 H 1.09006 * 109.46137 * 305.85220 * 6 5 4 30 30 H 1.08999 * 109.46167 * 65.82188 * 6 5 4 31 31 H 1.08997 * 109.50084 * 180.88153 * 7 6 5 32 32 H 1.08993 * 109.53872 * 60.77871 * 7 6 5 33 33 H 1.08993 * 109.52470 * 297.74837 * 8 7 6 34 34 H 1.09005 * 109.52009 * 177.56229 * 8 7 6 35 35 H 1.09000 * 109.50322 * 182.40532 * 9 8 7 36 36 H 1.08999 * 109.53790 * 62.30111 * 9 8 7 37 37 H 1.09007 * 109.46840 * 305.11706 * 12 10 5 38 38 H 1.09001 * 109.47413 * 65.11011 * 12 10 5 39 39 H 1.08997 * 109.47373 * 304.33955 * 13 12 10 40 40 H 1.09003 * 109.47369 * 64.34427 * 13 12 10 41 41 H 0.96999 * 119.99534 * 180.02562 * 17 16 14 42 42 H 1.09000 * 113.75632 * 23.26334 * 22 2 1 43 43 H 1.09008 * 113.76035 * 251.90594 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0212 0.8792 -1.0361 5 7 3.2516 1.8179 -2.1422 6 6 3.4570 3.1825 -1.6402 7 6 3.5482 4.1531 -2.8199 8 6 4.7131 3.7412 -3.7244 9 6 4.4990 2.2998 -4.1946 10 6 4.3801 1.3830 -2.9750 11 1 5.3007 1.4315 -2.3934 12 6 4.1460 -0.0558 -3.4399 13 6 5.3772 -0.5529 -4.2000 14 6 5.1064 -1.9299 -4.7492 15 1 4.1514 -2.4029 -4.5740 16 6 6.0774 -2.5854 -5.4762 17 7 5.8412 -3.7873 -5.9551 18 14 7.7288 -1.7669 -5.7799 19 1 8.6649 -2.1184 -4.6820 20 1 8.2843 -2.2381 -7.0740 21 1 7.5501 -0.2933 -5.8253 22 6 1.9992 -0.2247 -1.3630 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 2.4461 1.6802 0.9482 27 1 1.3011 2.1197 -0.3941 28 1 3.9451 0.5050 -0.5952 29 1 2.6197 3.4645 -1.0018 30 1 4.3819 3.2223 -1.0647 31 1 3.7164 5.1636 -2.4475 32 1 2.6186 4.1247 -3.3881 33 1 5.6477 3.8078 -3.1677 34 1 4.7550 4.4040 -4.5888 35 1 5.3463 1.9863 -4.8044 36 1 3.5844 2.2410 -4.7846 37 1 3.9718 -0.6938 -2.5734 38 1 3.2762 -0.0887 -4.0959 39 1 5.5971 0.1291 -5.0214 40 1 6.2305 -0.5932 -3.5229 41 1 6.5244 -4.2485 -6.4663 42 1 1.3009 0.0440 -2.1556 43 1 2.4459 -1.2090 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260963868.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:26 Heat of formation + Delta-G solvation = 25.459979 kcal Electronic energy + Delta-G solvation = -19715.094796 eV Core-core repulsion = 16988.584519 eV Total energy + Delta-G solvation = -2726.510277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.36153 -38.09427 -34.12802 -32.97857 -32.04328 -29.32954 -29.18823 -26.30465 -25.41095 -24.10607 -22.66926 -21.71972 -20.04366 -19.42723 -19.29889 -16.91743 -16.19814 -15.81749 -15.17281 -14.49132 -14.29995 -14.21409 -13.99925 -13.67462 -13.43468 -13.11625 -12.61445 -12.57180 -12.34439 -12.10173 -12.07442 -11.44327 -11.36238 -11.06952 -10.90638 -10.77344 -10.60764 -10.47839 -10.30488 -10.13471 -9.89843 -9.51860 -9.43995 -9.08271 -8.81865 -8.49683 -8.11588 -6.00882 -3.98006 3.32222 3.39634 3.42874 3.84155 4.16422 4.47838 4.50899 4.92431 4.98747 5.00822 5.12956 5.16753 5.32717 5.33996 5.41036 5.43873 5.55610 5.59040 5.61556 5.65726 5.75824 5.79390 5.82587 5.97729 6.01881 6.04381 6.11876 6.17834 6.29508 6.34935 6.42997 6.51736 6.61615 6.67951 6.96142 7.04967 7.30542 7.34804 7.43175 7.50632 7.84559 8.58622 9.04975 9.62141 11.12772 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.006555 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.211479 B = 4270.698585 C = 5457.518218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.489 5.489 3 C 0.004 3.996 4 C 0.056 3.944 5 N -0.525 5.525 6 C 0.055 3.945 7 C -0.114 4.114 8 C -0.122 4.122 9 C -0.112 4.112 10 C 0.085 3.915 11 H 0.035 0.965 12 C -0.097 4.097 13 C -0.013 4.013 14 C -0.516 4.516 15 H 0.071 0.929 16 C 0.066 3.934 17 N -0.905 5.905 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 C 0.019 3.981 23 H 0.035 0.965 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.018 0.982 40 H 0.007 0.993 41 H 0.262 0.738 42 H 0.080 0.920 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.795 15.272 9.766 19.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.212 5.212 3 C -0.125 4.125 4 C -0.053 4.053 5 N -0.251 5.251 6 C -0.073 4.073 7 C -0.152 4.152 8 C -0.160 4.160 9 C -0.149 4.149 10 C -0.023 4.023 11 H 0.053 0.947 12 C -0.135 4.135 13 C -0.051 4.051 14 C -0.554 4.554 15 H 0.089 0.911 16 C -0.135 4.135 17 N -0.544 5.544 18 Si 0.706 3.294 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.110 4.110 23 H 0.054 0.946 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.025 0.975 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.992 14.679 9.909 19.040 hybrid contribution 1.303 0.778 -0.343 1.556 sum -5.688 15.457 9.566 19.046 Atomic orbital electron populations 1.22816 0.89757 1.02343 1.00709 1.68455 1.08994 1.17928 1.25780 1.24110 0.97318 0.92021 0.99045 1.23466 0.97315 0.93802 0.90710 1.62238 1.42462 1.01057 1.19322 1.22040 0.99641 0.89147 0.96443 1.21565 0.99459 0.97422 0.96749 1.21618 0.97903 0.97391 0.99096 1.21670 1.02760 0.93139 0.97376 1.21817 0.90325 0.96718 0.93412 0.94711 1.21628 1.00390 0.91470 1.00003 1.19614 0.93346 0.97000 0.95130 1.21144 1.02040 0.99461 1.32753 0.91067 1.25026 0.98469 0.94673 0.95343 1.69919 1.34558 1.13040 1.36903 0.86802 0.84576 0.80445 0.77603 1.20411 1.21459 1.19029 1.24216 0.96690 1.00001 0.90064 0.94620 0.91183 0.91846 0.89929 0.90716 0.90564 0.91142 0.95297 0.92150 0.91309 0.92615 0.92170 0.90827 0.91216 0.92406 0.92061 0.96342 0.97510 0.92830 0.90200 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 9.65 60.06 0.58 0.50 16 2 N -0.49 -6.44 6.56 -246.72 -1.62 -8.06 16 3 C 0.00 0.05 6.40 -2.76 -0.02 0.03 16 4 C 0.06 0.78 2.70 -69.39 -0.19 0.59 16 5 N -0.53 -7.43 4.51 -220.14 -0.99 -8.42 16 6 C 0.06 0.65 5.18 -3.83 -0.02 0.63 16 7 C -0.11 -1.27 6.09 -26.65 -0.16 -1.43 16 8 C -0.12 -1.52 6.00 -26.61 -0.16 -1.68 16 9 C -0.11 -1.72 5.11 -26.65 -0.14 -1.85 16 10 C 0.08 1.39 1.86 -67.72 -0.13 1.27 16 11 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 12 C -0.10 -1.91 3.95 -26.73 -0.11 -2.02 16 13 C -0.01 -0.31 3.89 -27.89 -0.11 -0.42 16 14 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 15 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 18 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 22 C 0.02 0.27 6.24 -2.76 -0.02 0.26 16 23 H 0.04 0.38 7.62 -51.93 -0.40 -0.01 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.83 7.06 -51.93 -0.37 0.46 16 28 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 29 H 0.07 0.74 6.29 -51.93 -0.33 0.41 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.23 6.52 -51.93 -0.34 0.89 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.14 5.25 -51.92 -0.27 0.87 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.02 0.44 5.45 -51.93 -0.28 0.15 16 40 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.08 1.17 7.62 -51.93 -0.40 0.77 16 43 H 0.09 1.51 7.18 -51.92 -0.37 1.13 16 LS Contribution 319.91 15.07 4.82 4.82 Total: -1.00 -30.07 319.91 -10.37 -40.45 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.80 Total: -1.27 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -0.89 Total: -17.38 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: -1.84 Total: -43.87 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.07 -10.37 -40.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963868.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.908 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds