Wall clock time and date at job start Mon Mar 30 2020 03:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47958 * 111.00239 * 2 1 4 4 C 1.53944 * 86.18218 * 222.41858 * 3 2 1 5 5 N 1.46892 * 113.73396 * 138.07835 * 4 3 2 6 6 C 1.46844 * 111.00151 * 46.84316 * 5 4 3 7 7 C 1.53039 * 109.52493 * 185.84157 * 6 5 4 8 8 C 1.53123 * 109.27244 * 300.81751 * 7 6 5 9 9 C 1.53119 * 109.16264 * 57.65852 * 8 7 6 10 10 C 1.46846 * 110.99824 * 171.05119 * 5 4 3 11 11 H 1.08998 * 109.46609 * 294.16306 * 10 5 4 12 12 C 1.53001 * 109.46460 * 54.14755 * 10 5 4 13 13 C 1.52997 * 109.47258 * 185.11620 * 12 10 5 14 14 C 1.50698 * 109.47117 * 184.33742 * 13 12 10 15 15 H 1.08005 * 119.99942 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00293 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00180 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99837 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47517 * 89.99331 * 18 16 14 20 20 H 1.48498 * 109.46950 * 209.99652 * 18 16 14 21 21 H 1.48505 * 109.47043 * 329.99208 * 18 16 14 22 22 C 1.47963 * 110.99967 * 260.63977 * 2 1 3 23 23 H 1.09002 * 109.46844 * 59.99810 * 1 2 3 24 24 H 1.08994 * 109.47375 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46959 * 300.00360 * 1 2 3 26 26 H 1.08995 * 113.76166 * 108.10274 * 3 2 1 27 27 H 1.09001 * 113.75887 * 336.73103 * 3 2 1 28 28 H 1.09002 * 113.72762 * 269.36337 * 4 3 2 29 29 H 1.09006 * 109.46137 * 305.85220 * 6 5 4 30 30 H 1.08999 * 109.46167 * 65.82188 * 6 5 4 31 31 H 1.08997 * 109.50084 * 180.88153 * 7 6 5 32 32 H 1.08993 * 109.53872 * 60.77871 * 7 6 5 33 33 H 1.08993 * 109.52470 * 297.74837 * 8 7 6 34 34 H 1.09005 * 109.52009 * 177.56229 * 8 7 6 35 35 H 1.09000 * 109.50322 * 182.40532 * 9 8 7 36 36 H 1.08999 * 109.53790 * 62.30111 * 9 8 7 37 37 H 1.09007 * 109.46840 * 305.11706 * 12 10 5 38 38 H 1.09001 * 109.47413 * 65.11011 * 12 10 5 39 39 H 1.08997 * 109.47373 * 304.33955 * 13 12 10 40 40 H 1.09003 * 109.47369 * 64.34427 * 13 12 10 41 41 H 0.96999 * 119.99534 * 180.02562 * 17 16 14 42 42 H 1.09000 * 113.75632 * 23.26334 * 22 2 1 43 43 H 1.09008 * 113.76035 * 251.90594 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0212 0.8792 -1.0361 5 7 3.2516 1.8179 -2.1422 6 6 3.4570 3.1825 -1.6402 7 6 3.5482 4.1531 -2.8199 8 6 4.7131 3.7412 -3.7244 9 6 4.4990 2.2998 -4.1946 10 6 4.3801 1.3830 -2.9750 11 1 5.3007 1.4315 -2.3934 12 6 4.1460 -0.0558 -3.4399 13 6 5.3772 -0.5529 -4.2000 14 6 5.1064 -1.9299 -4.7492 15 1 4.1514 -2.4029 -4.5740 16 6 6.0774 -2.5854 -5.4762 17 7 5.8412 -3.7873 -5.9551 18 14 7.7288 -1.7669 -5.7799 19 1 8.6649 -2.1184 -4.6820 20 1 8.2843 -2.2381 -7.0740 21 1 7.5501 -0.2933 -5.8253 22 6 1.9992 -0.2247 -1.3630 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 2.4461 1.6802 0.9482 27 1 1.3011 2.1197 -0.3941 28 1 3.9451 0.5050 -0.5952 29 1 2.6197 3.4645 -1.0018 30 1 4.3819 3.2223 -1.0647 31 1 3.7164 5.1636 -2.4475 32 1 2.6186 4.1247 -3.3881 33 1 5.6477 3.8078 -3.1677 34 1 4.7550 4.4040 -4.5888 35 1 5.3463 1.9863 -4.8044 36 1 3.5844 2.2410 -4.7846 37 1 3.9718 -0.6938 -2.5734 38 1 3.2762 -0.0887 -4.0959 39 1 5.5971 0.1291 -5.0214 40 1 6.2305 -0.5932 -3.5229 41 1 6.5244 -4.2485 -6.4663 42 1 1.3009 0.0440 -2.1556 43 1 2.4459 -1.2090 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260963868.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:25 Heat of formation + Delta-G solvation = 3.950677 kcal Electronic energy + Delta-G solvation = -19716.027509 eV Core-core repulsion = 16988.584519 eV Total energy + Delta-G solvation = -2727.442990 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.45698 -39.21303 -35.88349 -34.16677 -33.85449 -30.83190 -30.27352 -27.50060 -26.94359 -25.20273 -23.89436 -23.17091 -21.47156 -20.58900 -20.48128 -18.95264 -17.48208 -16.90692 -16.48145 -16.00322 -15.72176 -15.33280 -15.25524 -14.82207 -14.65496 -14.56140 -14.20941 -13.79819 -13.63678 -13.59203 -13.12709 -12.96703 -12.76058 -12.39489 -12.11843 -11.94260 -11.87449 -11.78694 -11.67554 -11.59984 -11.52520 -11.33999 -10.96161 -10.85564 -10.71562 -9.83548 -9.25289 -8.28977 -6.32417 1.34399 1.36130 1.48308 2.35845 2.77263 3.06135 3.09491 3.45776 3.87253 3.91839 4.05178 4.09192 4.16736 4.28071 4.31325 4.44136 4.49412 4.52516 4.56983 4.61265 4.67283 4.73171 4.80354 4.84891 4.88853 4.95914 4.97490 5.06450 5.08867 5.10270 5.18337 5.27963 5.32236 5.36419 5.49354 5.56437 5.64628 5.67670 6.05881 6.18305 6.24518 6.32323 6.75513 7.31753 8.88130 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.006555 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.211479 B = 4270.698585 C = 5457.518218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.503 5.503 3 C 0.021 3.979 4 C 0.053 3.947 5 N -0.527 5.527 6 C 0.053 3.947 7 C -0.110 4.110 8 C -0.118 4.118 9 C -0.112 4.112 10 C 0.094 3.906 11 H 0.030 0.970 12 C -0.086 4.086 13 C -0.007 4.007 14 C -0.529 4.529 15 H 0.028 0.972 16 C 0.003 3.997 17 N -0.953 5.953 18 Si 0.949 3.051 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.244 1.244 22 C 0.017 3.983 23 H 0.038 0.962 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.031 0.969 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.025 0.975 40 H 0.010 0.990 41 H 0.266 0.734 42 H 0.075 0.925 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.296 18.512 10.847 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.226 5.226 3 C -0.108 4.108 4 C -0.057 4.057 5 N -0.253 5.253 6 C -0.075 4.075 7 C -0.147 4.147 8 C -0.156 4.156 9 C -0.150 4.150 10 C -0.014 4.014 11 H 0.048 0.952 12 C -0.124 4.124 13 C -0.045 4.045 14 C -0.567 4.567 15 H 0.047 0.953 16 C -0.193 4.193 17 N -0.594 5.594 18 Si 0.772 3.228 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.168 1.168 22 C -0.112 4.112 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.117 0.883 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.049 0.951 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.028 0.972 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.510 17.940 11.007 22.031 hybrid contribution 1.040 -0.323 -0.657 1.272 sum -5.470 17.617 10.350 21.152 Atomic orbital electron populations 1.22854 0.88327 1.02639 1.01763 1.68422 1.10555 1.19215 1.24405 1.24091 0.96302 0.91444 0.98926 1.23448 0.97017 0.93864 0.91326 1.62206 1.41143 1.02409 1.19496 1.22192 1.00634 0.87482 0.97155 1.21567 0.98639 0.98492 0.96047 1.21595 0.98738 0.95198 1.00032 1.21642 1.01683 0.95175 0.96499 1.21576 0.90977 0.94484 0.94354 0.95175 1.21421 0.97925 0.94114 0.98892 1.19533 0.95123 0.94325 0.95546 1.21487 1.00498 1.01686 1.33001 0.95313 1.26020 1.03067 0.95238 0.94979 1.70078 1.36280 1.14935 1.38079 0.85671 0.78901 0.80387 0.77801 1.19343 1.20861 1.16779 1.24080 0.97185 0.98960 0.91001 0.94319 0.91427 0.89889 0.88302 0.89310 0.92080 0.89077 0.95093 0.89429 0.91556 0.92261 0.90740 0.92410 0.91994 0.93230 0.93599 0.95652 0.97165 0.92561 0.90701 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.14 9.65 127.69 1.23 1.09 16 2 N -0.50 -12.77 6.56 -934.49 -6.13 -18.90 16 3 C 0.02 0.44 6.40 86.41 0.55 0.99 16 4 C 0.05 1.42 2.70 46.48 0.13 1.55 16 5 N -0.53 -14.15 4.51 -850.39 -3.83 -17.98 16 6 C 0.05 1.07 5.18 86.33 0.45 1.52 16 7 C -0.11 -2.03 6.09 30.65 0.19 -1.84 16 8 C -0.12 -2.58 6.00 30.68 0.18 -2.40 16 9 C -0.11 -3.30 5.11 30.65 0.16 -3.14 16 10 C 0.09 3.03 1.86 44.94 0.08 3.11 16 11 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 12 C -0.09 -3.47 3.95 30.59 0.12 -3.35 16 13 C -0.01 -0.36 3.89 29.85 0.12 -0.24 16 14 C -0.53 -31.41 9.66 25.60 0.25 -31.17 16 15 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 16 C 0.00 0.20 5.47 84.65 0.46 0.66 16 17 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 18 Si 0.95 45.14 27.47 68.60 1.88 47.02 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.24 -10.70 6.54 99.48 0.65 -10.05 16 22 C 0.02 0.50 6.24 86.41 0.54 1.04 16 23 H 0.04 0.77 7.62 -2.39 -0.02 0.75 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.09 1.65 7.06 -2.39 -0.02 1.63 16 28 H 0.06 1.85 8.05 -2.39 -0.02 1.83 16 29 H 0.09 1.52 6.29 -2.38 -0.01 1.51 16 30 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.06 1.86 6.52 -2.39 -0.02 1.84 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 2.06 5.25 -2.38 -0.01 2.05 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.03 1.18 5.45 -2.39 -0.01 1.17 16 40 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 41 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 42 H 0.07 2.25 7.62 -2.39 -0.02 2.23 16 43 H 0.07 2.30 7.18 -2.38 -0.02 2.28 16 Total: -1.00 -66.76 319.91 -2.43 -69.19 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.89 Total: 13.72 kcal Atomic # 6 Polarization: -36.63 SS G_CDS: 4.45 Total: -32.18 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -9.66 Total: -97.75 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -66.76 -2.43 -69.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963868.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.137 kcal (2) G-P(sol) polarization free energy of solvation -66.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds