Wall clock time and date at job start Mon Mar 30 2020 03:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47947 * 110.99928 * 2 1 4 4 C 1.53936 * 86.18231 * 222.41884 * 3 2 1 5 5 N 1.46900 * 113.73526 * 138.08214 * 4 3 2 6 6 C 1.44368 * 110.95405 * 51.70061 * 5 4 3 7 7 C 1.54059 * 111.89145 * 219.37460 * 6 5 4 8 8 C 1.54296 * 112.28953 * 318.90933 * 7 6 5 9 9 C 1.50457 * 113.02762 * 318.30368 * 8 7 6 10 10 C 1.54511 * 108.84945 * 92.15740 * 9 8 7 11 11 C 1.45862 * 111.59450 * 282.79746 * 10 9 8 12 12 H 1.09003 * 108.79528 * 300.54060 * 11 10 9 13 13 C 1.53005 * 108.78792 * 182.20533 * 11 10 9 14 14 C 1.50697 * 109.47101 * 62.99201 * 13 11 10 15 15 H 1.07999 * 120.00390 * 5.07104 * 14 13 11 16 16 C 1.37879 * 119.99956 * 185.07481 * 14 13 11 17 17 N 1.31518 * 120.00320 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99905 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47280 * 270.00632 * 18 16 14 20 20 H 1.48502 * 109.46970 * 30.00476 * 18 16 14 21 21 H 1.48499 * 109.46913 * 150.00125 * 18 16 14 22 22 C 1.47958 * 110.99821 * 260.63956 * 2 1 3 23 23 H 1.09006 * 109.47388 * 59.99946 * 1 2 3 24 24 H 1.09006 * 109.47338 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47108 * 299.99856 * 1 2 3 26 26 H 1.09000 * 113.76239 * 108.10291 * 3 2 1 27 27 H 1.09005 * 113.86570 * 336.74710 * 3 2 1 28 28 H 1.09004 * 113.72870 * 269.26325 * 4 3 2 29 29 H 1.09005 * 109.02997 * 98.75105 * 6 5 4 30 30 H 1.08997 * 108.95786 * 339.94760 * 6 5 4 31 31 H 1.08994 * 108.92260 * 198.18645 * 7 6 5 32 32 H 1.09004 * 108.84790 * 79.57927 * 7 6 5 33 33 H 1.08997 * 108.77303 * 197.38481 * 8 7 6 34 34 H 1.09004 * 108.67404 * 79.14960 * 8 7 6 35 35 H 1.09007 * 109.57706 * 332.35253 * 9 8 7 36 36 H 1.08996 * 109.68242 * 212.03119 * 9 8 7 37 37 H 1.09000 * 109.05687 * 162.24953 * 10 9 8 38 38 H 1.09000 * 109.04828 * 43.34036 * 10 9 8 39 39 H 1.08997 * 109.47649 * 302.98492 * 13 11 10 40 40 H 1.09005 * 109.47077 * 182.98415 * 13 11 10 41 41 H 0.97001 * 120.00215 * 179.97438 * 17 16 14 42 42 H 1.08999 * 113.76110 * 23.26474 * 22 2 1 43 43 H 1.09003 * 113.76076 * 251.90489 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3812 0.0000 4 6 3.0211 0.8792 -1.0361 5 7 3.2515 1.8180 -2.1422 6 6 3.5652 3.1361 -1.6438 7 6 2.9019 4.2419 -2.4868 8 6 2.9676 3.9436 -3.9992 9 6 4.2974 3.3892 -4.4325 10 6 4.2355 1.8462 -4.3818 11 6 4.3481 1.3490 -3.0152 12 1 5.2975 1.6834 -2.5969 13 6 4.3349 -0.1807 -3.0446 14 6 5.5373 -0.6789 -3.8042 15 1 6.2832 0.0199 -4.1532 16 6 5.6853 -2.0268 -4.0537 17 7 6.7349 -2.4617 -4.7161 18 14 4.3955 -3.2356 -3.4495 19 1 4.7541 -3.7016 -2.0859 20 1 3.0700 -2.5671 -3.4115 21 1 4.3371 -4.3987 -4.3708 22 6 1.9992 -0.2247 -1.3629 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.4460 1.6802 0.9482 27 1 1.3022 2.1212 -0.3935 28 1 3.9458 0.5067 -0.5952 29 1 4.6461 3.2756 -1.6634 30 1 3.2163 3.2177 -0.6144 31 1 3.4077 5.1872 -2.2908 32 1 1.8570 4.3323 -2.1895 33 1 2.7767 4.8662 -4.5473 34 1 2.1892 3.2218 -4.2467 35 1 5.0782 3.7455 -3.7605 36 1 4.5160 3.7126 -5.4502 37 1 5.0516 1.4374 -4.9776 38 1 3.2871 1.5141 -4.8043 39 1 3.4257 -0.5269 -3.5360 40 1 4.3652 -0.5640 -2.0246 41 1 6.8391 -3.4101 -4.8913 42 1 1.3010 0.0440 -2.1556 43 1 2.4459 -1.2090 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260968003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:17 Heat of formation + Delta-G solvation = 38.592231 kcal Electronic energy + Delta-G solvation = -20347.959943 eV Core-core repulsion = 17622.019124 eV Total energy + Delta-G solvation = -2725.940819 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33208 -38.04976 -34.08817 -33.37879 -31.92220 -29.55143 -28.50970 -26.28437 -25.43732 -24.14435 -22.92534 -21.49021 -19.75207 -19.34763 -18.83392 -17.10546 -16.00991 -15.63507 -15.07775 -14.49181 -14.28042 -14.26793 -13.94764 -13.82329 -12.89435 -12.80679 -12.52179 -12.36304 -12.31340 -12.06159 -11.68988 -11.45033 -11.18617 -10.95396 -10.86555 -10.53469 -10.36391 -10.30871 -10.06622 -10.03346 -9.79427 -9.68788 -9.37949 -9.08700 -8.69560 -8.52752 -7.82105 -6.04217 -4.01749 3.31675 3.39481 3.41604 4.04514 4.38357 4.45463 4.72973 5.11920 5.14807 5.21671 5.23956 5.29740 5.35108 5.50621 5.56832 5.60436 5.71635 5.73499 5.75440 5.85251 5.87650 5.94263 6.00357 6.10727 6.16271 6.18284 6.35011 6.40645 6.44378 6.48644 6.61642 6.69727 6.78505 6.92215 7.13614 7.17376 7.19774 7.42377 7.58271 7.71704 7.88000 8.52962 8.99743 9.58282 11.08820 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015875 B = 0.009816 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.346609 B = 2851.687195 C = 4276.454264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.489 5.489 3 C 0.004 3.996 4 C 0.061 3.939 5 N -0.521 5.521 6 C 0.052 3.948 7 C -0.104 4.104 8 C -0.106 4.106 9 C -0.119 4.119 10 C -0.100 4.100 11 C 0.098 3.902 12 H 0.036 0.964 13 C -0.018 4.018 14 C -0.516 4.516 15 H 0.073 0.927 16 C 0.069 3.931 17 N -0.903 5.903 18 Si 0.874 3.126 19 H -0.277 1.277 20 H -0.262 1.262 21 H -0.289 1.289 22 C 0.018 3.982 23 H 0.034 0.966 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.025 0.975 40 H 0.017 0.983 41 H 0.262 0.738 42 H 0.077 0.923 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 10.758 6.451 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.212 5.212 3 C -0.125 4.125 4 C -0.048 4.048 5 N -0.246 5.246 6 C -0.077 4.077 7 C -0.143 4.143 8 C -0.144 4.144 9 C -0.157 4.157 10 C -0.137 4.137 11 C -0.008 4.008 12 H 0.054 0.946 13 C -0.056 4.056 14 C -0.555 4.555 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.542 5.542 18 Si 0.701 3.299 19 H -0.203 1.203 20 H -0.186 1.186 21 H -0.215 1.215 22 C -0.110 4.110 23 H 0.053 0.947 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.035 0.965 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.736 10.163 6.640 16.206 hybrid contribution -0.199 -0.300 0.100 0.373 sum -10.935 9.864 6.739 16.195 Atomic orbital electron populations 1.22807 0.90020 1.02077 1.00652 1.68450 1.08728 1.18174 1.25850 1.24097 0.97528 0.91772 0.99149 1.23486 0.97024 0.93563 0.90687 1.62087 1.44195 1.01004 1.17267 1.21890 0.98587 0.89902 0.97295 1.21899 1.00000 0.96785 0.95595 1.21186 0.98604 0.99760 0.94825 1.21399 0.96979 0.97223 1.00068 1.20573 1.03095 0.93036 0.97021 1.20508 0.89677 0.97552 0.93079 0.94605 1.20013 0.98008 0.90542 0.97020 1.21101 1.06219 0.93122 1.35017 0.90900 1.24983 0.95274 0.98334 0.94654 1.69910 1.28517 1.14808 1.40990 0.86881 0.83162 0.80971 0.78852 1.20291 1.18642 1.21537 1.24221 0.96822 1.00135 0.89843 0.94715 0.91442 0.91864 0.90049 0.90820 0.90204 0.94309 0.92368 0.92905 0.92800 0.93844 0.91712 0.92758 0.92771 0.89964 0.92282 0.95643 0.96492 0.92786 0.90460 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 9.65 60.07 0.58 0.50 16 2 N -0.49 -7.33 6.56 -246.77 -1.62 -8.95 16 3 C 0.00 0.05 5.91 -2.77 -0.02 0.03 16 4 C 0.06 1.01 2.41 -69.41 -0.17 0.84 16 5 N -0.52 -8.57 4.18 -224.83 -0.94 -9.51 16 6 C 0.05 0.74 4.92 -4.63 -0.02 0.72 16 7 C -0.10 -1.31 6.14 -25.50 -0.16 -1.46 16 8 C -0.11 -1.44 5.42 -27.32 -0.15 -1.59 16 9 C -0.12 -1.81 5.60 -27.21 -0.15 -1.96 16 10 C -0.10 -1.85 4.61 -29.32 -0.14 -1.99 16 11 C 0.10 1.91 1.66 -70.59 -0.12 1.79 16 12 H 0.04 0.75 7.23 -51.93 -0.38 0.37 16 13 C -0.02 -0.42 2.05 -27.88 -0.06 -0.48 16 14 C -0.52 -14.21 8.74 -34.44 -0.30 -14.51 16 15 H 0.07 2.16 7.27 -52.49 -0.38 1.78 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 18 Si 0.87 21.58 27.57 -169.99 -4.69 16.89 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.26 -6.14 6.40 56.52 0.36 -5.78 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 C 0.02 0.31 6.02 -2.77 -0.02 0.29 16 23 H 0.03 0.42 7.62 -51.93 -0.40 0.02 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.07 0.95 7.80 -51.93 -0.41 0.54 16 28 H 0.08 1.45 7.08 -51.93 -0.37 1.08 16 29 H 0.04 0.58 6.51 -51.93 -0.34 0.24 16 30 H 0.06 0.74 6.13 -51.93 -0.32 0.42 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.96 7.38 -51.93 -0.38 0.58 16 35 H 0.05 0.82 7.15 -51.93 -0.37 0.45 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.73 6.55 -51.93 -0.34 1.39 16 38 H 0.06 1.12 7.59 -51.93 -0.39 0.73 16 39 H 0.03 0.60 6.29 -51.93 -0.33 0.28 16 40 H 0.02 0.40 4.86 -51.93 -0.25 0.14 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.08 1.30 7.62 -51.93 -0.40 0.90 16 43 H 0.09 1.69 7.34 -51.93 -0.38 1.31 16 LS Contribution 311.19 15.07 4.69 4.69 Total: -1.00 -28.90 311.19 -10.15 -39.05 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.56 Total: 0.56 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -0.81 Total: -15.93 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: -1.78 Total: -45.26 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.69 Total: 16.89 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.90 -10.15 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260968003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.644 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds