Wall clock time and date at job start Mon Mar 30 2020 03:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47947 * 110.99928 * 2 1 4 4 C 1.53936 * 86.18231 * 222.41884 * 3 2 1 5 5 N 1.46900 * 113.73526 * 138.08214 * 4 3 2 6 6 C 1.44368 * 110.95405 * 51.70061 * 5 4 3 7 7 C 1.54059 * 111.89145 * 219.37460 * 6 5 4 8 8 C 1.54296 * 112.28953 * 318.90933 * 7 6 5 9 9 C 1.50457 * 113.02762 * 318.30368 * 8 7 6 10 10 C 1.54511 * 108.84945 * 92.15740 * 9 8 7 11 11 C 1.45862 * 111.59450 * 282.79746 * 10 9 8 12 12 H 1.09003 * 108.79528 * 300.54060 * 11 10 9 13 13 C 1.53005 * 108.78792 * 182.20533 * 11 10 9 14 14 C 1.50697 * 109.47101 * 62.99201 * 13 11 10 15 15 H 1.07999 * 120.00390 * 5.07104 * 14 13 11 16 16 C 1.37879 * 119.99956 * 185.07481 * 14 13 11 17 17 N 1.31518 * 120.00320 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99905 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47280 * 270.00632 * 18 16 14 20 20 H 1.48502 * 109.46970 * 30.00476 * 18 16 14 21 21 H 1.48499 * 109.46913 * 150.00125 * 18 16 14 22 22 C 1.47958 * 110.99821 * 260.63956 * 2 1 3 23 23 H 1.09006 * 109.47388 * 59.99946 * 1 2 3 24 24 H 1.09006 * 109.47338 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47108 * 299.99856 * 1 2 3 26 26 H 1.09000 * 113.76239 * 108.10291 * 3 2 1 27 27 H 1.09005 * 113.86570 * 336.74710 * 3 2 1 28 28 H 1.09004 * 113.72870 * 269.26325 * 4 3 2 29 29 H 1.09005 * 109.02997 * 98.75105 * 6 5 4 30 30 H 1.08997 * 108.95786 * 339.94760 * 6 5 4 31 31 H 1.08994 * 108.92260 * 198.18645 * 7 6 5 32 32 H 1.09004 * 108.84790 * 79.57927 * 7 6 5 33 33 H 1.08997 * 108.77303 * 197.38481 * 8 7 6 34 34 H 1.09004 * 108.67404 * 79.14960 * 8 7 6 35 35 H 1.09007 * 109.57706 * 332.35253 * 9 8 7 36 36 H 1.08996 * 109.68242 * 212.03119 * 9 8 7 37 37 H 1.09000 * 109.05687 * 162.24953 * 10 9 8 38 38 H 1.09000 * 109.04828 * 43.34036 * 10 9 8 39 39 H 1.08997 * 109.47649 * 302.98492 * 13 11 10 40 40 H 1.09005 * 109.47077 * 182.98415 * 13 11 10 41 41 H 0.97001 * 120.00215 * 179.97438 * 17 16 14 42 42 H 1.08999 * 113.76110 * 23.26474 * 22 2 1 43 43 H 1.09003 * 113.76076 * 251.90489 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3812 0.0000 4 6 3.0211 0.8792 -1.0361 5 7 3.2515 1.8180 -2.1422 6 6 3.5652 3.1361 -1.6438 7 6 2.9019 4.2419 -2.4868 8 6 2.9676 3.9436 -3.9992 9 6 4.2974 3.3892 -4.4325 10 6 4.2355 1.8462 -4.3818 11 6 4.3481 1.3490 -3.0152 12 1 5.2975 1.6834 -2.5969 13 6 4.3349 -0.1807 -3.0446 14 6 5.5373 -0.6789 -3.8042 15 1 6.2832 0.0199 -4.1532 16 6 5.6853 -2.0268 -4.0537 17 7 6.7349 -2.4617 -4.7161 18 14 4.3955 -3.2356 -3.4495 19 1 4.7541 -3.7016 -2.0859 20 1 3.0700 -2.5671 -3.4115 21 1 4.3371 -4.3987 -4.3708 22 6 1.9992 -0.2247 -1.3629 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.4460 1.6802 0.9482 27 1 1.3022 2.1212 -0.3935 28 1 3.9458 0.5067 -0.5952 29 1 4.6461 3.2756 -1.6634 30 1 3.2163 3.2177 -0.6144 31 1 3.4077 5.1872 -2.2908 32 1 1.8570 4.3323 -2.1895 33 1 2.7767 4.8662 -4.5473 34 1 2.1892 3.2218 -4.2467 35 1 5.0782 3.7455 -3.7605 36 1 4.5160 3.7126 -5.4502 37 1 5.0516 1.4374 -4.9776 38 1 3.2871 1.5141 -4.8043 39 1 3.4257 -0.5269 -3.5360 40 1 4.3652 -0.5640 -2.0246 41 1 6.8391 -3.4101 -4.8913 42 1 1.3010 0.0440 -2.1556 43 1 2.4459 -1.2090 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260968003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:17 Heat of formation + Delta-G solvation = 17.893655 kcal Electronic energy + Delta-G solvation = -20348.857501 eV Core-core repulsion = 17622.019124 eV Total energy + Delta-G solvation = -2726.838377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61480 -39.33773 -35.69237 -34.78665 -33.78988 -30.67938 -30.21082 -27.51483 -26.77501 -25.68899 -24.11921 -23.12642 -20.95375 -20.86910 -20.08248 -19.12208 -17.36418 -16.89562 -16.65425 -16.00533 -15.56300 -15.46527 -15.39125 -15.20072 -14.69922 -14.14383 -13.90664 -13.69574 -13.52164 -13.43223 -13.20526 -12.90224 -12.67566 -12.49482 -12.24212 -11.93819 -11.81507 -11.65534 -11.61629 -11.40140 -11.27828 -11.20268 -11.05649 -10.87418 -10.72638 -9.83135 -9.19981 -8.29129 -6.30914 1.32816 1.33850 1.44929 2.33929 2.83687 3.06337 3.11258 3.52407 3.89313 4.02569 4.06492 4.16848 4.20928 4.34527 4.39303 4.44742 4.48667 4.54253 4.58883 4.62307 4.65735 4.78613 4.80989 4.88885 4.97327 4.98577 5.06556 5.11094 5.17284 5.28683 5.31644 5.35892 5.38883 5.51600 5.55103 5.59020 5.61450 5.76584 6.08358 6.15108 6.35716 6.40050 6.76034 7.32355 8.87206 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015875 B = 0.009816 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.346609 B = 2851.687195 C = 4276.454264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.502 5.502 3 C 0.023 3.977 4 C 0.051 3.949 5 N -0.512 5.512 6 C 0.047 3.953 7 C -0.099 4.099 8 C -0.104 4.104 9 C -0.111 4.111 10 C -0.096 4.096 11 C 0.109 3.891 12 H 0.016 0.984 13 C -0.006 4.006 14 C -0.518 4.518 15 H 0.036 0.964 16 C 0.009 3.991 17 N -0.950 5.950 18 Si 0.938 3.062 19 H -0.272 1.272 20 H -0.243 1.243 21 H -0.286 1.286 22 C 0.016 3.984 23 H 0.039 0.961 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.027 0.973 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.054 0.946 39 H 0.022 0.978 40 H 0.017 0.983 41 H 0.264 0.736 42 H 0.078 0.922 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.255 12.435 8.032 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 N -0.225 5.225 3 C -0.106 4.106 4 C -0.059 4.059 5 N -0.236 5.236 6 C -0.082 4.082 7 C -0.138 4.138 8 C -0.142 4.142 9 C -0.148 4.148 10 C -0.134 4.134 11 C 0.002 3.998 12 H 0.034 0.966 13 C -0.044 4.044 14 C -0.557 4.557 15 H 0.054 0.946 16 C -0.187 4.187 17 N -0.591 5.591 18 Si 0.762 3.238 19 H -0.197 1.197 20 H -0.166 1.166 21 H -0.212 1.212 22 C -0.113 4.113 23 H 0.058 0.942 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.035 0.965 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.487 11.866 8.233 19.760 hybrid contribution 0.723 -0.782 -0.393 1.135 sum -12.764 11.085 7.840 18.634 Atomic orbital electron populations 1.22863 0.88141 1.02673 1.01855 1.68415 1.10699 1.19160 1.24189 1.24058 0.96265 0.91470 0.98759 1.23533 0.96747 0.94072 0.91508 1.62106 1.42103 1.02155 1.17280 1.22047 0.98329 0.88885 0.98930 1.21891 1.01028 0.96673 0.94169 1.21148 0.96556 1.00327 0.96142 1.21327 0.98489 0.94114 1.00889 1.20463 1.01168 0.95949 0.95810 1.20268 0.90170 0.95074 0.94274 0.96572 1.19856 0.95399 0.93245 0.95857 1.21409 1.06887 0.92686 1.34684 0.94603 1.25862 0.97447 1.00441 0.94974 1.70056 1.30790 1.15349 1.42921 0.85856 0.81180 0.78473 0.78303 1.19710 1.16641 1.21184 1.24108 0.97173 0.98796 0.91199 0.94216 0.91305 0.89826 0.88402 0.89157 0.92525 0.95472 0.90235 0.90894 0.91199 0.91522 0.92909 0.92793 0.91833 0.93681 0.92747 0.95981 0.96478 0.92665 0.90378 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.13 9.65 127.69 1.23 1.10 16 2 N -0.50 -13.75 6.56 -934.65 -6.13 -19.88 16 3 C 0.02 0.55 5.91 86.41 0.51 1.06 16 4 C 0.05 1.59 2.41 46.48 0.11 1.70 16 5 N -0.51 -16.17 4.18 -865.23 -3.62 -19.79 16 6 C 0.05 1.20 4.92 87.13 0.43 1.62 16 7 C -0.10 -2.11 6.14 31.39 0.19 -1.91 16 8 C -0.10 -2.52 5.42 30.21 0.16 -2.36 16 9 C -0.11 -3.25 5.60 30.29 0.17 -3.08 16 10 C -0.10 -3.65 4.61 28.92 0.13 -3.52 16 11 C 0.11 4.34 1.66 42.56 0.07 4.41 16 12 H 0.02 0.70 7.23 -2.39 -0.02 0.69 16 13 C -0.01 -0.28 2.05 29.85 0.06 -0.22 16 14 C -0.52 -29.86 8.74 25.60 0.22 -29.64 16 15 H 0.04 2.27 7.27 -2.91 -0.02 2.25 16 16 C 0.01 0.56 5.47 84.65 0.46 1.02 16 17 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 18 Si 0.94 45.34 27.57 68.60 1.89 47.23 16 19 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.24 -10.90 6.40 99.48 0.64 -10.26 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 C 0.02 0.53 6.02 86.40 0.52 1.05 16 23 H 0.04 0.81 7.62 -2.38 -0.02 0.80 16 24 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.09 1.89 7.80 -2.38 -0.02 1.87 16 28 H 0.06 2.05 7.08 -2.38 -0.02 2.03 16 29 H 0.03 0.77 6.51 -2.38 -0.02 0.76 16 30 H 0.08 1.72 6.13 -2.39 -0.01 1.70 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 1.43 7.38 -2.38 -0.02 1.41 16 35 H 0.05 1.59 7.15 -2.38 -0.02 1.57 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.04 2.02 6.55 -2.39 -0.02 2.00 16 38 H 0.05 2.09 7.59 -2.39 -0.02 2.07 16 39 H 0.02 1.05 6.29 -2.39 -0.02 1.03 16 40 H 0.02 0.81 4.86 -2.38 -0.01 0.80 16 41 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 42 H 0.08 2.49 7.62 -2.39 -0.02 2.47 16 43 H 0.06 2.33 7.34 -2.39 -0.02 2.32 16 Total: -1.00 -64.86 311.19 -2.38 -67.24 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.89 Total: 13.92 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: 4.28 Total: -28.78 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -9.44 Total: -99.61 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.89 Total: 47.23 kcal Total: -64.86 -2.38 -67.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260968003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.132 kcal (2) G-P(sol) polarization free energy of solvation -64.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds