Wall clock time and date at job start Mon Mar 30 2020 03:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47961 * 110.99942 * 2 1 4 4 C 1.53935 * 86.17840 * 222.41234 * 3 2 1 5 5 N 1.46903 * 113.73410 * 138.07949 * 4 3 2 6 6 C 1.47632 * 110.99753 * 304.93236 * 5 4 3 7 7 C 1.50819 * 108.04072 * 150.32294 * 6 5 4 8 8 C 1.53818 * 111.61928 * 95.06902 * 7 6 5 9 9 C 1.54177 * 111.96603 * 319.04155 * 8 7 6 10 10 C 1.50809 * 112.54440 * 318.48240 * 9 8 7 11 11 C 1.39776 * 111.00324 * 176.03570 * 5 4 3 12 12 H 1.09009 * 109.02508 * 68.61816 * 11 5 4 13 13 C 1.53000 * 109.02110 * 309.72026 * 11 5 4 14 14 C 1.50699 * 109.47239 * 304.53337 * 13 11 5 15 15 H 1.07997 * 119.99764 * 355.05485 * 14 13 11 16 16 C 1.37869 * 120.00293 * 175.05565 * 14 13 11 17 17 N 1.31523 * 119.99897 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00372 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47381 * 270.00335 * 18 16 14 20 20 H 1.48500 * 109.46836 * 30.00061 * 18 16 14 21 21 H 1.48495 * 109.47241 * 149.99998 * 18 16 14 22 22 C 1.48187 * 111.07340 * 260.56179 * 2 1 3 23 23 H 1.09003 * 109.46847 * 60.00492 * 1 2 3 24 24 H 1.08998 * 109.47133 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47289 * 300.00448 * 1 2 3 26 26 H 1.08999 * 113.76143 * 108.09680 * 3 2 1 27 27 H 1.08997 * 113.86092 * 336.73800 * 3 2 1 28 28 H 1.09000 * 113.73837 * 269.25220 * 4 3 2 29 29 H 1.08997 * 109.74884 * 269.96010 * 6 5 4 30 30 H 1.09001 * 109.75067 * 30.63766 * 6 5 4 31 31 H 1.09001 * 109.04863 * 215.61110 * 7 6 5 32 32 H 1.08997 * 109.05523 * 334.58337 * 7 6 5 33 33 H 1.09000 * 108.98872 * 79.67950 * 8 7 6 34 34 H 1.08996 * 108.98300 * 198.48736 * 8 7 6 35 35 H 1.08996 * 108.85326 * 79.29786 * 9 8 7 36 36 H 1.08999 * 108.85253 * 197.78444 * 9 8 7 37 37 H 1.08994 * 109.61750 * 333.21473 * 10 9 8 38 38 H 1.09002 * 109.49823 * 212.93025 * 10 9 8 39 39 H 1.08997 * 109.47368 * 184.52978 * 13 11 5 40 40 H 1.09004 * 109.46874 * 64.53129 * 13 11 5 41 41 H 0.97002 * 119.99872 * 180.02562 * 17 16 14 42 42 H 1.08999 * 113.75886 * 23.24422 * 22 2 1 43 43 H 1.08994 * 113.82455 * 251.80772 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0211 0.8792 -1.0359 5 7 3.2517 1.8179 -2.1421 6 6 1.9828 2.1722 -2.8084 7 6 2.1200 3.5684 -3.3620 8 6 2.5474 3.5528 -4.8395 9 6 3.6213 2.4821 -5.1179 10 6 4.6668 2.4160 -4.0330 11 6 4.2511 1.3472 -2.9985 12 1 3.8821 0.4672 -3.5255 13 6 5.4748 0.9542 -2.1684 14 6 5.9105 2.1277 -1.3292 15 1 5.4197 3.0832 -1.4409 16 6 6.9355 1.9814 -0.4189 17 7 7.5335 0.8179 -0.2832 18 14 7.4761 3.4361 0.6208 19 1 8.5461 4.1818 -0.0894 20 1 6.3175 4.3353 0.8544 21 1 7.9943 2.9479 1.9239 22 6 2.0018 -0.2268 -1.3640 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 2.4459 1.6803 0.9482 27 1 1.3023 2.1211 -0.3937 28 1 3.9459 0.5068 -0.5952 29 1 1.7849 1.4720 -3.6200 30 1 1.1664 2.1399 -2.0870 31 1 1.1623 4.0816 -3.2743 32 1 2.8677 4.1093 -2.7821 33 1 1.6743 3.3485 -5.4592 34 1 2.9479 4.5316 -5.1032 35 1 3.1361 1.5096 -5.2002 36 1 4.1111 2.7121 -6.0641 37 1 4.7472 3.3861 -3.5427 38 1 5.6281 2.1460 -4.4700 39 1 6.2869 0.6621 -2.8341 40 1 5.2192 0.1175 -1.5182 41 1 8.2544 0.7149 0.3575 42 1 1.3044 0.0404 -2.1580 43 1 2.4506 -1.2102 -1.5036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260968004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:20 Heat of formation + Delta-G solvation = 45.531468 kcal Electronic energy + Delta-G solvation = -20497.591552 eV Core-core repulsion = 17771.951641 eV Total energy + Delta-G solvation = -2725.639911 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.46178 -37.84268 -34.23699 -32.83313 -31.65385 -29.38520 -27.79034 -25.81608 -25.66584 -24.33766 -22.78359 -22.03409 -20.07290 -19.12954 -18.05627 -16.56475 -15.89725 -15.50216 -14.79889 -14.55818 -14.44599 -14.24972 -14.09632 -13.49032 -12.85635 -12.58344 -12.46376 -12.19285 -11.94396 -11.69909 -11.59961 -11.37519 -11.22136 -10.88733 -10.68941 -10.54896 -10.42986 -10.24234 -10.09611 -9.92550 -9.79473 -9.74222 -9.05654 -8.82989 -8.52639 -8.22356 -7.29145 -5.86506 -3.84003 3.40447 3.47400 3.51624 4.17769 4.58013 4.66804 5.03460 5.12918 5.18701 5.25193 5.32452 5.40355 5.46744 5.51626 5.58493 5.68732 5.70800 5.73832 5.89583 5.93871 6.02279 6.09793 6.11312 6.12997 6.25488 6.30710 6.37604 6.42195 6.52613 6.57242 6.64933 6.79777 6.89896 7.00756 7.17230 7.33275 7.65251 7.71473 7.97540 8.13160 8.33508 8.63362 9.23219 9.78105 11.25280 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.009519 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.517959 B = 2940.690373 C = 3997.182008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.482 5.482 3 C 0.003 3.997 4 C 0.080 3.920 5 N -0.513 5.513 6 C 0.059 3.941 7 C -0.116 4.116 8 C -0.113 4.113 9 C -0.121 4.121 10 C -0.102 4.102 11 C 0.113 3.887 12 H -0.002 1.002 13 C 0.019 3.981 14 C -0.483 4.483 15 H 0.065 0.935 16 C 0.051 3.949 17 N -0.903 5.903 18 Si 0.886 3.114 19 H -0.285 1.285 20 H -0.274 1.274 21 H -0.291 1.291 22 C -0.041 4.041 23 H 0.028 0.972 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.141 0.859 29 H 0.032 0.968 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.015 0.985 40 H 0.023 0.977 41 H 0.257 0.743 42 H 0.064 0.936 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.720 1.881 -5.384 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.204 5.204 3 C -0.126 4.126 4 C -0.029 4.029 5 N -0.235 5.235 6 C -0.068 4.068 7 C -0.154 4.154 8 C -0.151 4.151 9 C -0.159 4.159 10 C -0.140 4.140 11 C 0.004 3.996 12 H 0.016 0.984 13 C -0.018 4.018 14 C -0.522 4.522 15 H 0.083 0.917 16 C -0.149 4.149 17 N -0.544 5.544 18 Si 0.715 3.285 19 H -0.212 1.212 20 H -0.199 1.199 21 H -0.217 1.217 22 C -0.172 4.172 23 H 0.046 0.954 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.158 0.842 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.033 0.967 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.250 1.765 -4.599 13.203 hybrid contribution -0.383 0.527 -0.362 0.745 sum -12.633 2.292 -4.961 13.765 Atomic orbital electron populations 1.22804 0.90642 1.01701 1.00451 1.68424 1.07928 1.19533 1.24537 1.24208 0.97053 0.90311 1.01056 1.23775 0.98509 0.89019 0.91637 1.58576 1.06846 1.45653 1.12454 1.21855 0.92187 0.96264 0.96489 1.21397 1.00923 0.97307 0.95822 1.21881 0.97847 0.98985 0.96355 1.21515 0.96922 0.98392 0.99031 1.21406 0.96843 1.00957 0.94755 1.20511 0.93221 0.92989 0.92899 0.98434 1.19471 0.90632 0.97184 0.94485 1.21123 1.15381 0.96805 1.18873 0.91722 1.25008 0.96948 0.95349 0.97564 1.69966 1.24723 1.23073 1.36611 0.86682 0.78742 0.83256 0.79823 1.21161 1.19911 1.21692 1.24863 0.99137 1.02441 0.90728 0.95369 0.91714 0.91726 0.89186 0.91432 0.84182 0.95020 0.91928 0.93091 0.90100 0.93384 0.92664 0.93165 0.93179 0.90569 0.91911 0.96721 0.95916 0.93371 0.91750 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.65 60.07 0.58 0.50 16 2 N -0.48 -7.68 6.55 -246.55 -1.62 -9.30 16 3 C 0.00 0.04 7.35 -2.76 -0.02 0.02 16 4 C 0.08 1.48 3.36 -69.40 -0.23 1.24 16 5 N -0.51 -9.40 3.26 -225.10 -0.73 -10.13 16 6 C 0.06 0.89 3.72 -4.52 -0.02 0.88 16 7 C -0.12 -1.65 5.41 -27.40 -0.15 -1.80 16 8 C -0.11 -1.50 5.91 -25.69 -0.15 -1.65 16 9 C -0.12 -1.79 5.32 -27.21 -0.14 -1.94 16 10 C -0.10 -1.85 4.53 -27.08 -0.12 -1.97 16 11 C 0.11 2.24 1.71 -70.63 -0.12 2.12 16 12 H 0.00 -0.04 7.54 -51.92 -0.39 -0.43 16 13 C 0.02 0.47 4.09 -27.88 -0.11 0.36 16 14 C -0.48 -12.82 7.66 -34.44 -0.26 -13.09 16 15 H 0.06 1.72 7.01 -52.49 -0.37 1.36 16 16 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 17 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 C -0.04 -0.66 7.27 -2.63 -0.02 -0.68 16 23 H 0.03 0.34 7.63 -51.93 -0.40 -0.06 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 27 H 0.07 1.02 5.92 -51.93 -0.31 0.71 16 28 H 0.14 3.17 5.27 -51.93 -0.27 2.90 16 29 H 0.03 0.48 6.30 -51.93 -0.33 0.15 16 30 H 0.06 0.90 5.16 -51.93 -0.27 0.63 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.32 7.25 -51.93 -0.38 0.94 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.75 6.57 -51.93 -0.34 0.41 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.49 6.54 -51.93 -0.34 1.15 16 38 H 0.06 1.18 7.92 -51.93 -0.41 0.77 16 39 H 0.01 0.39 8.01 -51.93 -0.42 -0.03 16 40 H 0.02 0.60 6.08 -51.93 -0.32 0.28 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.06 0.96 5.68 -51.93 -0.30 0.67 16 43 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 311.72 15.07 4.70 4.70 Total: -1.00 -28.00 311.72 -10.15 -38.15 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.34 Total: 0.46 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -0.87 Total: -14.68 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -1.61 Total: -45.33 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.00 -10.15 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260968004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.686 kcal (2) G-P(sol) polarization free energy of solvation -28.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds