Wall clock time and date at job start Mon Mar 30 2020 03:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47961 * 110.99942 * 2 1 4 4 C 1.53935 * 86.17840 * 222.41234 * 3 2 1 5 5 N 1.46903 * 113.73410 * 138.07949 * 4 3 2 6 6 C 1.47632 * 110.99753 * 304.93236 * 5 4 3 7 7 C 1.50819 * 108.04072 * 150.32294 * 6 5 4 8 8 C 1.53818 * 111.61928 * 95.06902 * 7 6 5 9 9 C 1.54177 * 111.96603 * 319.04155 * 8 7 6 10 10 C 1.50809 * 112.54440 * 318.48240 * 9 8 7 11 11 C 1.39776 * 111.00324 * 176.03570 * 5 4 3 12 12 H 1.09009 * 109.02508 * 68.61816 * 11 5 4 13 13 C 1.53000 * 109.02110 * 309.72026 * 11 5 4 14 14 C 1.50699 * 109.47239 * 304.53337 * 13 11 5 15 15 H 1.07997 * 119.99764 * 355.05485 * 14 13 11 16 16 C 1.37869 * 120.00293 * 175.05565 * 14 13 11 17 17 N 1.31523 * 119.99897 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00372 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47381 * 270.00335 * 18 16 14 20 20 H 1.48500 * 109.46836 * 30.00061 * 18 16 14 21 21 H 1.48495 * 109.47241 * 149.99998 * 18 16 14 22 22 C 1.48187 * 111.07340 * 260.56179 * 2 1 3 23 23 H 1.09003 * 109.46847 * 60.00492 * 1 2 3 24 24 H 1.08998 * 109.47133 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47289 * 300.00448 * 1 2 3 26 26 H 1.08999 * 113.76143 * 108.09680 * 3 2 1 27 27 H 1.08997 * 113.86092 * 336.73800 * 3 2 1 28 28 H 1.09000 * 113.73837 * 269.25220 * 4 3 2 29 29 H 1.08997 * 109.74884 * 269.96010 * 6 5 4 30 30 H 1.09001 * 109.75067 * 30.63766 * 6 5 4 31 31 H 1.09001 * 109.04863 * 215.61110 * 7 6 5 32 32 H 1.08997 * 109.05523 * 334.58337 * 7 6 5 33 33 H 1.09000 * 108.98872 * 79.67950 * 8 7 6 34 34 H 1.08996 * 108.98300 * 198.48736 * 8 7 6 35 35 H 1.08996 * 108.85326 * 79.29786 * 9 8 7 36 36 H 1.08999 * 108.85253 * 197.78444 * 9 8 7 37 37 H 1.08994 * 109.61750 * 333.21473 * 10 9 8 38 38 H 1.09002 * 109.49823 * 212.93025 * 10 9 8 39 39 H 1.08997 * 109.47368 * 184.52978 * 13 11 5 40 40 H 1.09004 * 109.46874 * 64.53129 * 13 11 5 41 41 H 0.97002 * 119.99872 * 180.02562 * 17 16 14 42 42 H 1.08999 * 113.75886 * 23.24422 * 22 2 1 43 43 H 1.08994 * 113.82455 * 251.80772 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0211 0.8792 -1.0359 5 7 3.2517 1.8179 -2.1421 6 6 1.9828 2.1722 -2.8084 7 6 2.1200 3.5684 -3.3620 8 6 2.5474 3.5528 -4.8395 9 6 3.6213 2.4821 -5.1179 10 6 4.6668 2.4160 -4.0330 11 6 4.2511 1.3472 -2.9985 12 1 3.8821 0.4672 -3.5255 13 6 5.4748 0.9542 -2.1684 14 6 5.9105 2.1277 -1.3292 15 1 5.4197 3.0832 -1.4409 16 6 6.9355 1.9814 -0.4189 17 7 7.5335 0.8179 -0.2832 18 14 7.4761 3.4361 0.6208 19 1 8.5461 4.1818 -0.0894 20 1 6.3175 4.3353 0.8544 21 1 7.9943 2.9479 1.9239 22 6 2.0018 -0.2268 -1.3640 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 2.4459 1.6803 0.9482 27 1 1.3023 2.1211 -0.3937 28 1 3.9459 0.5068 -0.5952 29 1 1.7849 1.4720 -3.6200 30 1 1.1664 2.1399 -2.0870 31 1 1.1623 4.0816 -3.2743 32 1 2.8677 4.1093 -2.7821 33 1 1.6743 3.3485 -5.4592 34 1 2.9479 4.5316 -5.1032 35 1 3.1361 1.5096 -5.2002 36 1 4.1111 2.7121 -6.0641 37 1 4.7472 3.3861 -3.5427 38 1 5.6281 2.1460 -4.4700 39 1 6.2869 0.6621 -2.8341 40 1 5.2192 0.1175 -1.5182 41 1 8.2544 0.7149 0.3575 42 1 1.3044 0.0404 -2.1580 43 1 2.4506 -1.2102 -1.5036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260968004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:19 Heat of formation + Delta-G solvation = 26.958373 kcal Electronic energy + Delta-G solvation = -20498.396942 eV Core-core repulsion = 17771.951641 eV Total energy + Delta-G solvation = -2726.445301 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.83728 -39.18106 -35.76385 -34.49369 -33.32502 -30.58955 -29.55652 -27.11015 -26.92548 -26.10801 -24.17417 -23.51936 -21.49075 -20.53549 -19.42042 -18.33869 -17.51762 -16.89809 -16.47633 -15.96497 -15.93189 -15.55122 -15.36234 -14.84858 -14.24710 -14.16605 -13.86608 -13.45242 -13.40679 -13.18638 -13.15459 -12.85069 -12.63070 -12.57502 -12.36309 -12.22679 -11.86518 -11.66061 -11.47968 -11.32317 -11.24089 -11.12281 -10.91571 -10.66286 -10.38456 -9.74523 -8.73609 -8.04352 -6.07187 1.43201 1.44373 1.55015 2.50636 2.89074 3.25526 3.33993 3.74212 3.88836 4.01769 4.08138 4.15965 4.20112 4.33809 4.38805 4.40849 4.46890 4.51212 4.62361 4.73796 4.78908 4.80516 4.84640 4.93901 4.97453 5.01990 5.06441 5.18195 5.30715 5.35335 5.37464 5.38333 5.46122 5.58258 5.63166 5.66268 5.75712 5.94175 6.14668 6.41349 6.52955 6.89483 7.07451 7.58317 9.07866 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.009519 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.517959 B = 2940.690373 C = 3997.182008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.499 5.499 3 C 0.014 3.986 4 C 0.068 3.932 5 N -0.526 5.526 6 C 0.063 3.937 7 C -0.115 4.115 8 C -0.109 4.109 9 C -0.116 4.116 10 C -0.096 4.096 11 C 0.128 3.872 12 H -0.002 1.002 13 C 0.025 3.975 14 C -0.474 4.474 15 H 0.064 0.936 16 C -0.006 4.006 17 N -0.942 5.942 18 Si 0.949 3.051 19 H -0.280 1.280 20 H -0.265 1.265 21 H -0.292 1.292 22 C -0.026 4.026 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.046 0.954 39 H -0.016 1.016 40 H -0.003 1.003 41 H 0.255 0.745 42 H 0.085 0.915 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.415 3.457 -6.249 16.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.222 5.222 3 C -0.115 4.115 4 C -0.041 4.041 5 N -0.248 5.248 6 C -0.063 4.063 7 C -0.153 4.153 8 C -0.147 4.147 9 C -0.154 4.154 10 C -0.134 4.134 11 C 0.018 3.982 12 H 0.016 0.984 13 C -0.012 4.012 14 C -0.513 4.513 15 H 0.082 0.918 16 C -0.201 4.201 17 N -0.584 5.584 18 Si 0.776 3.224 19 H -0.206 1.206 20 H -0.189 1.189 21 H -0.218 1.218 22 C -0.157 4.157 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.002 0.998 40 H 0.015 0.985 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.965 3.353 -5.472 16.283 hybrid contribution 0.450 -0.016 -0.087 0.458 sum -14.515 3.337 -5.559 15.898 Atomic orbital electron populations 1.22873 0.88181 1.02800 1.01710 1.68376 1.10487 1.19032 1.24304 1.24112 0.96570 0.91206 0.99590 1.23528 0.97325 0.90663 0.92598 1.58529 1.08359 1.45507 1.12424 1.21938 0.90544 0.97031 0.96819 1.21385 1.01625 0.96314 0.95958 1.21865 0.98059 0.98619 0.96108 1.21434 0.96478 0.99376 0.98066 1.21308 0.97577 0.99212 0.95294 1.20236 0.91756 0.93724 0.92523 0.98439 1.19340 0.92028 0.95878 0.93917 1.21318 1.14581 0.97049 1.18344 0.91782 1.25802 0.97418 0.97776 0.99135 1.70107 1.25523 1.25158 1.37643 0.85674 0.78522 0.80194 0.77999 1.20565 1.18924 1.21838 1.24722 0.98472 1.00814 0.91649 0.93881 0.90773 0.90602 0.90620 0.89287 0.89337 0.94240 0.90501 0.90337 0.92591 0.90905 0.91941 0.92994 0.91655 0.92021 0.93521 0.99815 0.98513 0.93602 0.89659 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.15 9.65 127.69 1.23 1.08 16 2 N -0.50 -15.26 6.55 -933.95 -6.12 -21.38 16 3 C 0.01 0.45 7.35 86.41 0.63 1.08 16 4 C 0.07 2.56 3.36 46.48 0.16 2.72 16 5 N -0.53 -19.04 3.26 -866.09 -2.83 -21.86 16 6 C 0.06 1.72 3.72 85.45 0.32 2.04 16 7 C -0.11 -2.87 5.41 30.16 0.16 -2.70 16 8 C -0.11 -2.49 5.91 31.27 0.18 -2.30 16 9 C -0.12 -3.16 5.32 30.28 0.16 -3.00 16 10 C -0.10 -3.47 4.53 30.37 0.14 -3.33 16 11 C 0.13 5.14 1.71 46.69 0.08 5.22 16 12 H 0.00 -0.08 7.54 -2.38 -0.02 -0.10 16 13 C 0.03 1.31 4.09 29.85 0.12 1.44 16 14 C -0.47 -26.07 7.66 25.60 0.20 -25.88 16 15 H 0.06 3.48 7.01 -2.91 -0.02 3.46 16 16 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 17 N -0.94 -57.92 13.29 21.45 0.28 -57.63 16 18 Si 0.95 45.51 29.54 68.60 2.03 47.54 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 22 C -0.03 -0.81 7.27 86.37 0.63 -0.18 16 23 H 0.04 0.85 7.63 -2.39 -0.02 0.83 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.09 2.44 5.92 -2.39 -0.01 2.42 16 28 H 0.09 4.28 5.27 -2.39 -0.01 4.27 16 29 H 0.04 1.05 6.30 -2.39 -0.02 1.03 16 30 H 0.08 1.89 5.16 -2.39 -0.01 1.88 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.70 7.25 -2.39 -0.02 1.69 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.41 6.57 -2.39 -0.02 1.39 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 2.40 6.54 -2.39 -0.02 2.38 16 38 H 0.05 1.80 7.92 -2.39 -0.02 1.78 16 39 H -0.02 -0.93 8.01 -2.39 -0.02 -0.95 16 40 H 0.00 -0.19 6.08 -2.39 -0.01 -0.20 16 41 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 42 H 0.09 2.31 5.68 -2.39 -0.01 2.29 16 43 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -62.80 311.72 -1.19 -63.99 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.97 Total: 13.04 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 4.48 Total: -23.69 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -8.66 Total: -100.88 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -62.80 -1.19 -63.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260968004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.950 kcal (2) G-P(sol) polarization free energy of solvation -62.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds