Wall clock time and date at job start Mon Mar 30 2020 03:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47964 * 111.00253 * 2 1 4 4 C 1.53930 * 86.17911 * 222.41733 * 3 2 1 5 5 N 1.46900 * 113.73290 * 138.08116 * 4 3 2 6 6 C 1.46843 * 111.00310 * 67.25334 * 5 4 3 7 7 C 1.53038 * 109.52493 * 185.83812 * 6 5 4 8 8 C 1.53119 * 109.27791 * 300.82084 * 7 6 5 9 9 C 1.53117 * 109.16100 * 57.65225 * 8 7 6 10 10 H 1.09000 * 109.50243 * 62.32457 * 9 8 7 11 11 C 1.53005 * 109.50265 * 182.40087 * 9 8 7 12 12 C 1.53000 * 109.47337 * 295.00434 * 11 9 8 13 13 C 1.50693 * 109.47180 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99760 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00305 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99936 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99673 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46881 * 269.99929 * 17 15 13 19 19 H 1.48501 * 109.47339 * 29.99897 * 17 15 13 20 20 H 1.48497 * 109.47020 * 150.00240 * 17 15 13 21 21 C 1.46850 * 110.99979 * 191.46485 * 5 4 3 22 22 C 1.48184 * 111.07324 * 260.56577 * 2 1 3 23 23 H 1.08998 * 109.47347 * 59.99908 * 1 2 3 24 24 H 1.08992 * 109.47423 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47413 * 300.00192 * 1 2 3 26 26 H 1.08999 * 113.75824 * 108.09790 * 3 2 1 27 27 H 1.09004 * 113.85799 * 336.74605 * 3 2 1 28 28 H 1.09008 * 113.73234 * 269.25356 * 4 3 2 29 29 H 1.08998 * 109.46416 * 65.82111 * 6 5 4 30 30 H 1.09002 * 109.45098 * 305.84821 * 6 5 4 31 31 H 1.09002 * 109.50547 * 180.87396 * 7 6 5 32 32 H 1.09008 * 109.50009 * 60.76290 * 7 6 5 33 33 H 1.08998 * 109.51931 * 297.74543 * 8 7 6 34 34 H 1.09006 * 109.51602 * 177.55657 * 8 7 6 35 35 H 1.08994 * 109.46935 * 174.99995 * 11 9 8 36 36 H 1.08997 * 109.46379 * 55.00027 * 11 9 8 37 37 H 1.08997 * 109.47223 * 59.99421 * 12 11 9 38 38 H 1.09001 * 109.46796 * 299.99622 * 12 11 9 39 39 H 0.97001 * 119.99648 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.46424 * 54.13737 * 21 5 4 41 41 H 1.09002 * 109.45843 * 294.17365 * 21 5 4 42 42 H 1.08994 * 113.75890 * 23.23860 * 22 2 1 43 43 H 1.09007 * 113.82531 * 251.81351 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 -1.0360 5 7 3.2516 1.8180 -2.1421 6 6 3.9196 3.0365 -1.6677 7 6 4.0122 4.0479 -2.8126 8 6 4.8000 3.4295 -3.9708 9 6 4.1100 2.1365 -4.4142 10 1 3.1087 2.3650 -4.7792 11 6 4.9237 1.4805 -5.5316 12 6 4.9181 2.3855 -6.7653 13 6 5.7200 1.7397 -7.8656 14 1 6.1867 0.7796 -7.7016 15 6 5.8571 2.3740 -9.0821 16 7 6.5566 1.8101 -10.0426 17 14 5.0482 4.0336 -9.3665 18 1 3.6799 3.8311 -9.9068 19 1 4.9684 4.7723 -8.0807 20 1 5.8531 4.8166 -10.3382 21 6 4.0146 1.1806 -3.2229 22 6 2.0018 -0.2267 -1.3640 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 2.4460 1.6802 0.9483 27 1 1.3022 2.1212 -0.3936 28 1 3.9458 0.5067 -0.5952 29 1 4.9225 2.7890 -1.3198 30 1 3.3468 3.4684 -0.8470 31 1 4.5219 4.9462 -2.4643 32 1 3.0090 4.3064 -3.1517 33 1 5.8152 3.2067 -3.6428 34 1 4.8312 4.1303 -4.8051 35 1 4.4816 0.5172 -5.7856 36 1 5.9496 1.3320 -5.1947 37 1 5.3602 3.3488 -6.5113 38 1 3.8921 2.5341 -7.1021 39 1 6.6534 2.2566 -10.8983 40 1 3.5110 0.2645 -3.5317 41 1 5.0170 0.9417 -2.8677 42 1 1.3043 0.0404 -2.1579 43 1 2.4505 -1.2102 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260972866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:34 Heat of formation + Delta-G solvation = 18.782166 kcal Electronic energy + Delta-G solvation = -19104.935816 eV Core-core repulsion = 16378.135968 eV Total energy + Delta-G solvation = -2726.799848 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.38695 -38.30474 -34.61095 -32.68383 -31.81124 -29.78021 -29.10375 -26.45046 -25.02280 -24.62007 -22.63648 -21.84258 -20.22886 -19.67473 -19.20498 -16.83215 -16.45031 -15.98520 -15.31705 -14.67936 -14.48344 -14.25289 -14.02098 -13.73562 -13.51382 -13.07007 -12.88046 -12.55649 -12.51918 -12.25396 -12.04938 -11.64753 -11.52346 -11.06132 -11.05276 -10.84293 -10.79738 -10.44921 -10.33837 -10.13488 -9.84633 -9.55848 -9.37678 -9.09271 -9.06994 -8.50094 -8.35534 -6.01223 -3.98423 3.32726 3.39896 3.43755 3.61758 3.93161 4.22224 4.48025 4.82254 4.85691 4.94486 5.05239 5.10099 5.17959 5.22414 5.33311 5.34495 5.37560 5.43122 5.52304 5.58226 5.61024 5.66525 5.74100 5.80099 5.94556 6.00588 6.05636 6.06561 6.16550 6.34938 6.42273 6.52418 6.67853 6.76615 6.84368 6.94666 7.10192 7.16802 7.37485 7.51035 7.84688 8.58358 9.04482 9.61939 11.12509 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035342 B = 0.004200 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.058736 B = 6665.064720 C = 6981.051641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.488 5.488 3 C 0.012 3.988 4 C 0.050 3.950 5 N -0.530 5.530 6 C 0.059 3.941 7 C -0.117 4.117 8 C -0.117 4.117 9 C -0.084 4.084 10 H 0.072 0.928 11 C -0.097 4.097 12 C -0.013 4.013 13 C -0.519 4.519 14 H 0.070 0.930 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.880 3.120 18 H -0.278 1.278 19 H -0.265 1.265 20 H -0.289 1.289 21 C 0.063 3.937 22 C 0.013 3.987 23 H 0.037 0.963 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.017 0.983 38 H 0.009 0.991 39 H 0.262 0.738 40 H 0.072 0.928 41 H 0.032 0.968 42 H 0.081 0.919 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.661 1.035 20.483 22.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.211 5.211 3 C -0.117 4.117 4 C -0.059 4.059 5 N -0.255 5.255 6 C -0.069 4.069 7 C -0.154 4.154 8 C -0.155 4.155 9 C -0.103 4.103 10 H 0.091 0.909 11 C -0.135 4.135 12 C -0.050 4.050 13 C -0.557 4.557 14 H 0.088 0.912 15 C -0.136 4.136 16 N -0.545 5.545 17 Si 0.707 3.293 18 H -0.204 1.204 19 H -0.190 1.190 20 H -0.215 1.215 21 C -0.065 4.065 22 C -0.116 4.116 23 H 0.056 0.944 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.028 0.972 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.100 0.900 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.911 0.736 20.660 22.926 hybrid contribution 0.073 1.111 -0.640 1.284 sum -9.838 1.847 20.020 22.383 Atomic orbital electron populations 1.22829 0.89419 1.02344 1.01135 1.68457 1.09313 1.18541 1.24787 1.23993 0.97083 0.91698 0.98937 1.23512 0.97163 0.93425 0.91832 1.62242 1.49047 1.05518 1.08735 1.22019 0.96545 0.90955 0.97393 1.21608 1.01138 0.97084 0.95606 1.21679 0.98504 0.97591 0.97706 1.21283 1.00260 0.94428 0.94334 0.90949 1.21469 0.98356 0.99068 0.94587 1.19588 0.96389 0.95598 0.93409 1.21198 1.31614 1.06653 0.96215 0.91180 1.25046 0.94949 0.97612 0.96018 1.69925 1.41169 1.39006 1.04442 0.86772 0.79535 0.84710 0.78235 1.20350 1.18990 1.21494 1.22157 0.95451 0.97470 0.91386 1.24093 0.97088 0.99274 0.91101 0.94387 0.91219 0.91532 0.89748 0.90335 0.91101 0.95069 0.91338 0.91932 0.91402 0.92442 0.91084 0.92839 0.92989 0.96453 0.97233 0.92830 0.90917 0.94952 0.90038 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 9.65 60.06 0.58 0.51 16 2 N -0.49 -5.02 6.55 -246.56 -1.62 -6.64 16 3 C 0.01 0.11 6.85 -2.76 -0.02 0.10 16 4 C 0.05 0.54 3.34 -69.41 -0.23 0.31 16 5 N -0.53 -6.45 4.60 -228.10 -1.05 -7.50 16 6 C 0.06 0.67 5.38 -3.84 -0.02 0.65 16 7 C -0.12 -1.43 6.09 -26.65 -0.16 -1.59 16 8 C -0.12 -1.76 4.98 -26.61 -0.13 -1.89 16 9 C -0.08 -1.35 2.35 -90.54 -0.21 -1.56 16 10 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 11 C -0.10 -1.90 4.63 -26.73 -0.12 -2.02 16 12 C -0.01 -0.30 3.80 -27.89 -0.11 -0.40 16 13 C -0.52 -14.96 9.66 -34.44 -0.33 -15.30 16 14 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 15 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.91 -28.31 13.96 55.43 0.77 -27.54 16 17 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 C 0.06 0.86 4.68 -3.84 -0.02 0.84 16 22 C 0.01 0.14 7.08 -2.64 -0.02 0.12 16 23 H 0.04 0.33 7.63 -51.93 -0.40 -0.07 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.76 7.93 -51.93 -0.41 0.35 16 28 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.68 7.39 -51.93 -0.38 0.30 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.17 6.70 -51.93 -0.35 0.83 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.41 5.68 -51.93 -0.30 0.12 16 38 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 40 H 0.07 0.98 7.56 -51.93 -0.39 0.59 16 41 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.89 7.63 -51.93 -0.40 0.49 16 43 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 LS Contribution 327.51 15.07 4.94 4.94 Total: -1.00 -30.37 327.51 -10.62 -40.99 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -8.10 Total: -3.13 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -0.90 Total: -18.44 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: -1.89 Total: -41.67 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.37 -10.62 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260972866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.773 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds