Wall clock time and date at job start Mon Mar 30 2020 03:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47964 * 111.00253 * 2 1 4 4 C 1.53930 * 86.17911 * 222.41733 * 3 2 1 5 5 N 1.46900 * 113.73290 * 138.08116 * 4 3 2 6 6 C 1.46843 * 111.00310 * 67.25334 * 5 4 3 7 7 C 1.53038 * 109.52493 * 185.83812 * 6 5 4 8 8 C 1.53119 * 109.27791 * 300.82084 * 7 6 5 9 9 C 1.53117 * 109.16100 * 57.65225 * 8 7 6 10 10 H 1.09000 * 109.50243 * 62.32457 * 9 8 7 11 11 C 1.53005 * 109.50265 * 182.40087 * 9 8 7 12 12 C 1.53000 * 109.47337 * 295.00434 * 11 9 8 13 13 C 1.50693 * 109.47180 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99760 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00305 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99936 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99673 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46881 * 269.99929 * 17 15 13 19 19 H 1.48501 * 109.47339 * 29.99897 * 17 15 13 20 20 H 1.48497 * 109.47020 * 150.00240 * 17 15 13 21 21 C 1.46850 * 110.99979 * 191.46485 * 5 4 3 22 22 C 1.48184 * 111.07324 * 260.56577 * 2 1 3 23 23 H 1.08998 * 109.47347 * 59.99908 * 1 2 3 24 24 H 1.08992 * 109.47423 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47413 * 300.00192 * 1 2 3 26 26 H 1.08999 * 113.75824 * 108.09790 * 3 2 1 27 27 H 1.09004 * 113.85799 * 336.74605 * 3 2 1 28 28 H 1.09008 * 113.73234 * 269.25356 * 4 3 2 29 29 H 1.08998 * 109.46416 * 65.82111 * 6 5 4 30 30 H 1.09002 * 109.45098 * 305.84821 * 6 5 4 31 31 H 1.09002 * 109.50547 * 180.87396 * 7 6 5 32 32 H 1.09008 * 109.50009 * 60.76290 * 7 6 5 33 33 H 1.08998 * 109.51931 * 297.74543 * 8 7 6 34 34 H 1.09006 * 109.51602 * 177.55657 * 8 7 6 35 35 H 1.08994 * 109.46935 * 174.99995 * 11 9 8 36 36 H 1.08997 * 109.46379 * 55.00027 * 11 9 8 37 37 H 1.08997 * 109.47223 * 59.99421 * 12 11 9 38 38 H 1.09001 * 109.46796 * 299.99622 * 12 11 9 39 39 H 0.97001 * 119.99648 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.46424 * 54.13737 * 21 5 4 41 41 H 1.09002 * 109.45843 * 294.17365 * 21 5 4 42 42 H 1.08994 * 113.75890 * 23.23860 * 22 2 1 43 43 H 1.09007 * 113.82531 * 251.81351 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 -1.0360 5 7 3.2516 1.8180 -2.1421 6 6 3.9196 3.0365 -1.6677 7 6 4.0122 4.0479 -2.8126 8 6 4.8000 3.4295 -3.9708 9 6 4.1100 2.1365 -4.4142 10 1 3.1087 2.3650 -4.7792 11 6 4.9237 1.4805 -5.5316 12 6 4.9181 2.3855 -6.7653 13 6 5.7200 1.7397 -7.8656 14 1 6.1867 0.7796 -7.7016 15 6 5.8571 2.3740 -9.0821 16 7 6.5566 1.8101 -10.0426 17 14 5.0482 4.0336 -9.3665 18 1 3.6799 3.8311 -9.9068 19 1 4.9684 4.7723 -8.0807 20 1 5.8531 4.8166 -10.3382 21 6 4.0146 1.1806 -3.2229 22 6 2.0018 -0.2267 -1.3640 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 2.4460 1.6802 0.9483 27 1 1.3022 2.1212 -0.3936 28 1 3.9458 0.5067 -0.5952 29 1 4.9225 2.7890 -1.3198 30 1 3.3468 3.4684 -0.8470 31 1 4.5219 4.9462 -2.4643 32 1 3.0090 4.3064 -3.1517 33 1 5.8152 3.2067 -3.6428 34 1 4.8312 4.1303 -4.8051 35 1 4.4816 0.5172 -5.7856 36 1 5.9496 1.3320 -5.1947 37 1 5.3602 3.3488 -6.5113 38 1 3.8921 2.5341 -7.1021 39 1 6.6534 2.2566 -10.8983 40 1 3.5110 0.2645 -3.5317 41 1 5.0170 0.9417 -2.8677 42 1 1.3043 0.0404 -2.1579 43 1 2.4505 -1.2102 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260972866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:34 Heat of formation + Delta-G solvation = -2.440087 kcal Electronic energy + Delta-G solvation = -19105.856082 eV Core-core repulsion = 16378.135968 eV Total energy + Delta-G solvation = -2727.720114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.24393 -39.37170 -36.14157 -34.47077 -33.10342 -31.13676 -30.20646 -27.43737 -26.51662 -25.64111 -23.58529 -23.26486 -21.70216 -20.65185 -20.36650 -18.88688 -17.48470 -16.81059 -16.42165 -16.11158 -15.71162 -15.55075 -15.06437 -15.05233 -14.73158 -14.47304 -14.03398 -13.90145 -13.62123 -13.53896 -13.14681 -13.13564 -12.81754 -12.38247 -12.11626 -11.93172 -11.90803 -11.78018 -11.72803 -11.61417 -11.48128 -11.29324 -10.91382 -10.87555 -10.72827 -9.85855 -9.31360 -8.29191 -6.32774 1.35622 1.37267 1.49741 2.36545 2.75877 3.06341 3.09621 3.40433 3.85634 3.95298 4.01594 4.10963 4.17783 4.24887 4.27661 4.50408 4.52045 4.55308 4.60317 4.63722 4.67018 4.71287 4.75896 4.77853 4.84538 4.96472 4.98216 5.03060 5.09170 5.11985 5.19663 5.21764 5.32456 5.37655 5.45915 5.61456 5.67359 5.71564 6.02881 6.11153 6.19310 6.30431 6.75626 7.31786 8.87961 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035342 B = 0.004200 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.058736 B = 6665.064720 C = 6981.051641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.500 5.500 3 C 0.021 3.979 4 C 0.049 3.951 5 N -0.532 5.532 6 C 0.059 3.941 7 C -0.110 4.110 8 C -0.118 4.118 9 C -0.075 4.075 10 H 0.068 0.932 11 C -0.090 4.090 12 C -0.007 4.007 13 C -0.533 4.533 14 H 0.028 0.972 15 C 0.001 3.999 16 N -0.954 5.954 17 Si 0.952 3.048 18 H -0.267 1.267 19 H -0.245 1.245 20 H -0.284 1.284 21 C 0.071 3.929 22 C 0.013 3.987 23 H 0.037 0.963 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.023 0.977 38 H 0.014 0.986 39 H 0.266 0.734 40 H 0.072 0.928 41 H 0.028 0.972 42 H 0.076 0.924 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 2.793 22.443 25.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.223 5.223 3 C -0.108 4.108 4 C -0.060 4.060 5 N -0.257 5.257 6 C -0.069 4.069 7 C -0.147 4.147 8 C -0.156 4.156 9 C -0.094 4.094 10 H 0.086 0.914 11 C -0.128 4.128 12 C -0.045 4.045 13 C -0.571 4.571 14 H 0.047 0.953 15 C -0.195 4.195 16 N -0.595 5.595 17 Si 0.775 3.225 18 H -0.192 1.192 19 H -0.168 1.168 20 H -0.210 1.210 21 C -0.057 4.057 22 C -0.116 4.116 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.041 0.959 38 H 0.032 0.968 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.095 0.905 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.471 2.487 22.649 25.510 hybrid contribution 0.604 0.454 -1.251 1.462 sum -10.867 2.941 21.398 24.178 Atomic orbital electron populations 1.22855 0.88425 1.02791 1.01611 1.68461 1.10413 1.19030 1.24385 1.23977 0.96440 0.91438 0.98953 1.23540 0.97343 0.93429 0.91708 1.62230 1.48590 1.05995 1.08924 1.22072 0.96914 0.90338 0.97545 1.21562 1.00699 0.97809 0.94665 1.21664 0.98817 0.96699 0.98412 1.21117 0.99162 0.95226 0.93892 0.91357 1.21337 0.98722 0.98289 0.94441 1.19521 0.95424 0.96123 0.93406 1.21578 1.31908 1.05493 0.98132 0.95331 1.26062 0.95591 1.02261 0.95597 1.70083 1.42993 1.41226 1.05206 0.85630 0.78612 0.79219 0.79043 1.19199 1.16808 1.20955 1.21960 0.95616 0.96898 0.91243 1.24066 0.96988 0.99229 0.91278 0.94461 0.90876 0.90454 0.88583 0.90107 0.91378 0.95099 0.89230 0.90082 0.91465 0.92744 0.92658 0.93564 0.93784 0.95883 0.96786 0.92551 0.90940 0.95333 0.90541 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 9.65 127.69 1.23 1.12 16 2 N -0.50 -9.25 6.55 -933.97 -6.12 -15.37 16 3 C 0.02 0.34 6.85 86.41 0.59 0.94 16 4 C 0.05 0.95 3.34 46.48 0.16 1.10 16 5 N -0.53 -11.79 4.60 -875.59 -4.03 -15.82 16 6 C 0.06 1.17 5.38 86.33 0.46 1.63 16 7 C -0.11 -2.38 6.09 30.65 0.19 -2.20 16 8 C -0.12 -3.36 4.98 30.67 0.15 -3.21 16 9 C -0.08 -2.32 2.35 -10.74 -0.03 -2.35 16 10 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 11 C -0.09 -3.54 4.63 30.60 0.14 -3.40 16 12 C -0.01 -0.35 3.80 29.85 0.11 -0.24 16 13 C -0.53 -31.57 9.66 25.60 0.25 -31.32 16 14 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 15 C 0.00 0.07 5.47 84.65 0.46 0.53 16 16 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16 17 Si 0.95 45.02 27.47 68.60 1.88 46.90 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 19 H -0.24 -10.67 6.54 99.48 0.65 -10.02 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 C 0.07 1.86 4.68 86.32 0.40 2.26 16 22 C 0.01 0.26 7.08 86.36 0.61 0.87 16 23 H 0.04 0.57 7.63 -2.39 -0.02 0.55 16 24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.32 7.93 -2.38 -0.02 1.30 16 28 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 1.44 7.39 -2.39 -0.02 1.42 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.73 6.70 -2.38 -0.02 1.72 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.02 1.07 5.68 -2.39 -0.01 1.06 16 38 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 39 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 40 H 0.07 1.90 7.56 -2.39 -0.02 1.88 16 41 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 1.56 7.63 -2.39 -0.02 1.54 16 43 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -65.90 327.51 -2.35 -68.25 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.88 Total: 11.12 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: 4.74 Total: -34.26 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -9.85 Total: -92.01 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.90 kcal Total: -65.90 -2.35 -68.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260972866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.806 kcal (2) G-P(sol) polarization free energy of solvation -65.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds