Wall clock time and date at job start Mon Mar 30 2020 03:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47963 * 110.99989 * 2 1 4 4 C 1.53934 * 86.17891 * 222.42154 * 3 2 1 5 5 N 1.46894 * 113.73628 * 138.08243 * 4 3 2 6 6 C 1.46848 * 110.99700 * 306.10805 * 5 4 3 7 7 C 1.53041 * 109.52422 * 174.15944 * 6 5 4 8 8 C 1.53119 * 109.27779 * 59.17665 * 7 6 5 9 9 C 1.53118 * 109.16271 * 302.34743 * 8 7 6 10 10 H 1.09006 * 109.53781 * 297.69791 * 9 8 7 11 11 C 1.52994 * 109.50842 * 177.59522 * 9 8 7 12 12 C 1.52996 * 109.47119 * 65.19436 * 11 9 8 13 13 C 1.50702 * 109.47159 * 180.02562 * 12 11 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.46846 * 111.00135 * 181.89488 * 5 4 3 22 22 C 1.48180 * 111.06830 * 260.56892 * 2 1 3 23 23 H 1.08996 * 109.47288 * 59.99511 * 1 2 3 24 24 H 1.08995 * 109.47608 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46500 * 299.99992 * 1 2 3 26 26 H 1.08995 * 113.75536 * 108.10075 * 3 2 1 27 27 H 1.09000 * 113.85985 * 336.75126 * 3 2 1 28 28 H 1.09000 * 113.73079 * 269.25769 * 4 3 2 29 29 H 1.08995 * 109.46148 * 294.17234 * 6 5 4 30 30 H 1.09001 * 109.46246 * 54.14442 * 6 5 4 31 31 H 1.08998 * 109.50851 * 179.11930 * 7 6 5 32 32 H 1.09003 * 109.50044 * 299.20283 * 7 6 5 33 33 H 1.08997 * 109.52829 * 182.44594 * 8 7 6 34 34 H 1.09003 * 109.52382 * 62.25258 * 8 7 6 35 35 H 1.09004 * 109.46806 * 305.19699 * 11 9 8 36 36 H 1.09000 * 109.47828 * 185.20003 * 11 9 8 37 37 H 1.09004 * 109.47066 * 60.00422 * 12 11 9 38 38 H 1.08994 * 109.47405 * 300.00252 * 12 11 9 39 39 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 40 40 H 1.09007 * 109.45771 * 65.82518 * 21 5 4 41 41 H 1.08996 * 109.46215 * 305.85329 * 21 5 4 42 42 H 1.09005 * 113.76514 * 23.23643 * 22 2 1 43 43 H 1.09009 * 113.82605 * 251.81419 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9993 1.3814 0.0000 4 6 3.0211 0.8793 -1.0361 5 7 3.2515 1.8180 -2.1422 6 6 1.9864 2.1922 -2.7870 7 6 2.2474 3.2772 -3.8343 8 6 3.2357 2.7465 -4.8765 9 6 4.5267 2.3188 -4.1729 10 1 4.9841 3.1840 -3.6928 11 6 5.4975 1.7316 -5.1993 12 6 5.9211 2.8236 -6.1836 13 6 6.8769 2.2450 -7.1950 14 1 7.1541 1.2025 -7.1414 15 6 7.3926 3.0450 -8.1925 16 7 7.0548 4.3143 -8.2580 17 14 8.5713 2.3260 -9.4507 18 1 8.7885 0.8862 -9.1593 19 1 7.9939 2.4737 -10.8109 20 1 9.8681 3.0464 -9.3826 21 6 4.1996 1.2615 -3.1158 22 6 2.0018 -0.2266 -1.3641 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 2.4460 1.6802 0.9482 27 1 1.3023 2.1212 -0.3935 28 1 3.9458 0.5068 -0.5954 29 1 1.5528 1.3171 -3.2711 30 1 1.2941 2.5718 -2.0356 31 1 1.3106 3.5436 -4.3237 32 1 2.6677 4.1579 -3.3488 33 1 3.4580 3.5307 -5.6002 34 1 2.7992 1.8894 -5.3893 35 1 5.0072 0.9234 -5.7422 36 1 6.3774 1.3432 -4.6866 37 1 6.4114 3.6317 -5.6407 38 1 5.0412 3.2118 -6.6964 39 1 7.4179 4.8773 -8.9596 40 1 3.7555 0.3908 -3.5983 41 1 5.1147 0.9653 -2.6031 42 1 1.3042 0.0405 -2.1580 43 1 2.4505 -1.2102 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260972873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:37 Heat of formation + Delta-G solvation = 22.506694 kcal Electronic energy + Delta-G solvation = -19154.966315 eV Core-core repulsion = 16428.327974 eV Total energy + Delta-G solvation = -2726.638341 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.75665 -38.04470 -34.43639 -32.69784 -31.72826 -29.68928 -28.64116 -26.39059 -25.11658 -24.58809 -22.64390 -22.30532 -20.62882 -19.25937 -18.77394 -16.76994 -16.22885 -15.97633 -15.33337 -14.71795 -14.49730 -14.33020 -14.02616 -13.63400 -13.51418 -13.08649 -12.85158 -12.39878 -12.31016 -12.07955 -11.82913 -11.66439 -11.36135 -11.15656 -10.94842 -10.84789 -10.69231 -10.55522 -10.26608 -10.12897 -9.95910 -9.53188 -9.16009 -9.08887 -8.93504 -8.30687 -8.20210 -5.96541 -3.98153 3.32520 3.40016 3.44217 3.56530 3.98700 4.39362 4.48970 4.60741 4.80246 4.95865 4.98720 5.11563 5.13730 5.27190 5.30500 5.39254 5.40917 5.46452 5.54649 5.56086 5.64022 5.74520 5.79750 5.89577 6.00662 6.02316 6.03759 6.17108 6.27982 6.48886 6.55442 6.67592 6.73163 6.83715 7.01960 7.09523 7.15358 7.28940 7.73987 7.90295 8.05135 8.48350 9.09639 9.65543 11.14729 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.050789 B = 0.003782 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.169587 B = 7400.972848 C = 7660.006577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.483 5.483 3 C 0.004 3.996 4 C 0.064 3.936 5 N -0.527 5.527 6 C 0.052 3.948 7 C -0.116 4.116 8 C -0.115 4.115 9 C -0.082 4.082 10 H 0.073 0.927 11 C -0.105 4.105 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.064 3.936 22 C -0.040 4.040 23 H 0.033 0.967 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.014 0.986 38 H 0.018 0.982 39 H 0.259 0.741 40 H 0.031 0.969 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.906 -5.756 14.601 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.206 5.206 3 C -0.125 4.125 4 C -0.046 4.046 5 N -0.250 5.250 6 C -0.076 4.076 7 C -0.154 4.154 8 C -0.153 4.153 9 C -0.101 4.101 10 H 0.092 0.908 11 C -0.143 4.143 12 C -0.015 4.015 13 C -0.557 4.557 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.063 4.063 22 C -0.171 4.171 23 H 0.052 0.948 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.130 0.870 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.033 0.967 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.518 -5.624 15.229 20.500 hybrid contribution -0.135 -0.564 -1.724 1.818 sum -12.653 -6.188 13.506 19.514 Atomic orbital electron populations 1.22835 0.89728 1.02297 1.00961 1.68435 1.08969 1.18811 1.24357 1.24192 0.96966 0.91258 1.00114 1.23630 0.97869 0.90562 0.92550 1.61904 1.11661 1.40709 1.10699 1.22228 0.91141 0.97747 0.96483 1.21611 0.99415 0.98203 0.96197 1.21657 0.94947 1.01199 0.97472 1.21264 0.96032 0.97900 0.94907 0.90815 1.21644 0.96524 0.99804 0.96313 1.19116 0.96133 0.93218 0.93000 1.21340 1.26527 0.96117 1.11730 0.92796 1.25024 0.96752 0.94881 0.97866 1.69977 1.44643 1.05277 1.33638 0.86579 0.80962 0.79283 0.81430 1.19785 1.21089 1.21044 1.22185 0.95078 0.96282 0.92756 1.24812 0.99081 1.01737 0.91427 0.94841 0.91259 0.91372 0.89023 0.90643 0.86978 0.94910 0.91416 0.92041 0.91198 0.90599 0.92814 0.93666 0.93412 0.96722 0.96333 0.93148 0.95064 0.90912 0.90572 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.65 60.07 0.58 0.50 16 2 N -0.48 -4.99 6.55 -246.54 -1.62 -6.60 16 3 C 0.00 0.04 7.45 -2.76 -0.02 0.02 16 4 C 0.06 0.70 4.04 -69.41 -0.28 0.42 16 5 N -0.53 -6.72 4.80 -228.10 -1.09 -7.81 16 6 C 0.05 0.61 4.52 -3.83 -0.02 0.60 16 7 C -0.12 -1.53 6.09 -26.65 -0.16 -1.69 16 8 C -0.12 -1.85 4.98 -26.61 -0.13 -1.98 16 9 C -0.08 -1.39 2.35 -90.54 -0.21 -1.61 16 10 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 11 C -0.10 -2.14 4.62 -26.74 -0.12 -2.26 16 12 C 0.02 0.57 4.73 -27.88 -0.13 0.44 16 13 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 17 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.06 0.92 4.68 -3.83 -0.02 0.90 16 22 C -0.04 -0.42 7.27 -2.64 -0.02 -0.44 16 23 H 0.03 0.28 7.63 -51.93 -0.40 -0.12 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.08 0.73 5.73 -51.93 -0.30 0.43 16 28 H 0.11 1.24 8.12 -51.93 -0.42 0.82 16 29 H 0.03 0.39 6.29 -51.93 -0.33 0.07 16 30 H 0.07 0.72 5.86 -51.93 -0.30 0.42 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.38 6.70 -51.93 -0.35 1.03 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.02 0.50 6.63 -51.93 -0.34 0.15 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 42 H 0.08 0.81 5.21 -51.93 -0.27 0.53 16 43 H 0.09 0.91 8.14 -51.92 -0.42 0.48 16 LS Contribution 324.50 15.07 4.89 4.89 Total: -1.00 -29.73 324.50 -10.80 -40.53 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -7.74 Total: -2.75 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -0.95 Total: -18.71 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: -1.97 Total: -40.76 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.73 -10.80 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260972873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.039 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds