Wall clock time and date at job start Mon Mar 30 2020 03:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47963 * 110.99989 * 2 1 4 4 C 1.53934 * 86.17891 * 222.42154 * 3 2 1 5 5 N 1.46894 * 113.73628 * 138.08243 * 4 3 2 6 6 C 1.46848 * 110.99700 * 306.10805 * 5 4 3 7 7 C 1.53041 * 109.52422 * 174.15944 * 6 5 4 8 8 C 1.53119 * 109.27779 * 59.17665 * 7 6 5 9 9 C 1.53118 * 109.16271 * 302.34743 * 8 7 6 10 10 H 1.09006 * 109.53781 * 297.69791 * 9 8 7 11 11 C 1.52994 * 109.50842 * 177.59522 * 9 8 7 12 12 C 1.52996 * 109.47119 * 65.19436 * 11 9 8 13 13 C 1.50702 * 109.47159 * 180.02562 * 12 11 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.46846 * 111.00135 * 181.89488 * 5 4 3 22 22 C 1.48180 * 111.06830 * 260.56892 * 2 1 3 23 23 H 1.08996 * 109.47288 * 59.99511 * 1 2 3 24 24 H 1.08995 * 109.47608 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46500 * 299.99992 * 1 2 3 26 26 H 1.08995 * 113.75536 * 108.10075 * 3 2 1 27 27 H 1.09000 * 113.85985 * 336.75126 * 3 2 1 28 28 H 1.09000 * 113.73079 * 269.25769 * 4 3 2 29 29 H 1.08995 * 109.46148 * 294.17234 * 6 5 4 30 30 H 1.09001 * 109.46246 * 54.14442 * 6 5 4 31 31 H 1.08998 * 109.50851 * 179.11930 * 7 6 5 32 32 H 1.09003 * 109.50044 * 299.20283 * 7 6 5 33 33 H 1.08997 * 109.52829 * 182.44594 * 8 7 6 34 34 H 1.09003 * 109.52382 * 62.25258 * 8 7 6 35 35 H 1.09004 * 109.46806 * 305.19699 * 11 9 8 36 36 H 1.09000 * 109.47828 * 185.20003 * 11 9 8 37 37 H 1.09004 * 109.47066 * 60.00422 * 12 11 9 38 38 H 1.08994 * 109.47405 * 300.00252 * 12 11 9 39 39 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 40 40 H 1.09007 * 109.45771 * 65.82518 * 21 5 4 41 41 H 1.08996 * 109.46215 * 305.85329 * 21 5 4 42 42 H 1.09005 * 113.76514 * 23.23643 * 22 2 1 43 43 H 1.09009 * 113.82605 * 251.81419 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9993 1.3814 0.0000 4 6 3.0211 0.8793 -1.0361 5 7 3.2515 1.8180 -2.1422 6 6 1.9864 2.1922 -2.7870 7 6 2.2474 3.2772 -3.8343 8 6 3.2357 2.7465 -4.8765 9 6 4.5267 2.3188 -4.1729 10 1 4.9841 3.1840 -3.6928 11 6 5.4975 1.7316 -5.1993 12 6 5.9211 2.8236 -6.1836 13 6 6.8769 2.2450 -7.1950 14 1 7.1541 1.2025 -7.1414 15 6 7.3926 3.0450 -8.1925 16 7 7.0548 4.3143 -8.2580 17 14 8.5713 2.3260 -9.4507 18 1 8.7885 0.8862 -9.1593 19 1 7.9939 2.4737 -10.8109 20 1 9.8681 3.0464 -9.3826 21 6 4.1996 1.2615 -3.1158 22 6 2.0018 -0.2266 -1.3641 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 2.4460 1.6802 0.9482 27 1 1.3023 2.1212 -0.3935 28 1 3.9458 0.5068 -0.5954 29 1 1.5528 1.3171 -3.2711 30 1 1.2941 2.5718 -2.0356 31 1 1.3106 3.5436 -4.3237 32 1 2.6677 4.1579 -3.3488 33 1 3.4580 3.5307 -5.6002 34 1 2.7992 1.8894 -5.3893 35 1 5.0072 0.9234 -5.7422 36 1 6.3774 1.3432 -4.6866 37 1 6.4114 3.6317 -5.6407 38 1 5.0412 3.2118 -6.6964 39 1 7.4179 4.8773 -8.9596 40 1 3.7555 0.3908 -3.5983 41 1 5.1147 0.9653 -2.6031 42 1 1.3042 0.0405 -2.1580 43 1 2.4505 -1.2102 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260972873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:36 Heat of formation + Delta-G solvation = 2.235657 kcal Electronic energy + Delta-G solvation = -19155.845333 eV Core-core repulsion = 16428.327974 eV Total energy + Delta-G solvation = -2727.517359 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.63919 -39.19255 -36.05021 -34.41784 -33.06587 -30.88060 -30.00382 -27.19665 -26.81649 -25.71640 -23.85972 -23.51133 -22.10917 -20.67281 -19.70403 -18.47667 -17.60427 -16.84557 -16.53776 -16.18880 -15.77730 -15.47896 -15.28147 -14.83307 -14.69148 -14.34039 -13.97709 -13.88991 -13.52979 -13.30617 -13.19139 -12.98609 -12.82658 -12.56695 -12.36638 -12.03745 -11.97505 -11.80752 -11.75660 -11.59655 -11.43578 -11.24276 -10.94339 -10.75272 -10.51073 -9.85753 -9.18767 -8.18702 -6.29351 1.39448 1.39654 1.53075 2.41231 2.69293 3.12136 3.14090 3.56311 3.74436 3.87584 3.99800 4.02989 4.16906 4.21136 4.24082 4.38823 4.47105 4.50443 4.60140 4.63932 4.69782 4.73905 4.76560 4.82411 4.88575 4.94704 4.97787 4.98869 5.12957 5.18162 5.23979 5.29940 5.30984 5.43453 5.48894 5.60673 5.83059 5.89676 5.98750 6.14782 6.16515 6.28842 6.88683 7.39555 8.93101 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.050789 B = 0.003782 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.169587 B = 7400.972848 C = 7660.006577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.495 5.495 3 C 0.010 3.990 4 C 0.060 3.940 5 N -0.534 5.534 6 C 0.055 3.945 7 C -0.111 4.111 8 C -0.114 4.114 9 C -0.076 4.076 10 H 0.057 0.943 11 C -0.093 4.093 12 C 0.028 3.972 13 C -0.543 4.543 14 H 0.058 0.942 15 C -0.002 4.002 16 N -0.933 5.933 17 Si 0.963 3.037 18 H -0.262 1.262 19 H -0.278 1.278 20 H -0.278 1.278 21 C 0.075 3.925 22 C -0.036 4.036 23 H 0.037 0.963 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.038 0.962 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.049 0.951 37 H -0.015 1.015 38 H -0.002 1.002 39 H 0.263 0.737 40 H 0.035 0.965 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.650 -7.015 15.310 21.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.217 5.217 3 C -0.119 4.119 4 C -0.049 4.049 5 N -0.257 5.257 6 C -0.072 4.072 7 C -0.148 4.148 8 C -0.151 4.151 9 C -0.094 4.094 10 H 0.075 0.925 11 C -0.131 4.131 12 C -0.009 4.009 13 C -0.581 4.581 14 H 0.076 0.924 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.788 3.212 18 H -0.186 1.186 19 H -0.204 1.204 20 H -0.204 1.204 21 C -0.053 4.053 22 C -0.166 4.166 23 H 0.056 0.944 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.099 0.901 28 H 0.129 0.871 29 H 0.056 0.944 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.003 0.997 38 H 0.016 0.984 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.274 -6.893 15.956 21.870 hybrid contribution 0.082 -0.139 -1.928 1.935 sum -13.192 -7.033 14.028 20.501 Atomic orbital electron populations 1.22876 0.88591 1.02797 1.01620 1.68432 1.10203 1.18990 1.24103 1.24180 0.96488 0.91274 0.99935 1.23681 0.98341 0.90706 0.92172 1.61859 1.11889 1.41353 1.10628 1.22227 0.91062 0.97376 0.96525 1.21563 0.99180 0.98335 0.95748 1.21594 0.95421 1.00355 0.97749 1.21105 0.95498 0.98029 0.94810 0.92463 1.21450 0.97523 0.98055 0.96035 1.18995 0.94626 0.93865 0.93402 1.21789 1.27204 0.96481 1.12627 0.92424 1.25980 0.98595 0.95222 1.00132 1.70110 1.45905 1.06738 1.34609 0.85425 0.78419 0.78902 0.78462 1.18623 1.20352 1.20383 1.21955 0.95935 0.95058 0.92324 1.24762 0.98798 1.01367 0.91692 0.94416 0.90910 0.90461 0.88473 0.90090 0.87102 0.94403 0.89474 0.90219 0.91866 0.93676 0.92585 0.93363 0.93266 0.99676 0.98411 0.92852 0.94687 0.90614 0.90445 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.14 9.65 127.69 1.23 1.09 16 2 N -0.49 -9.01 6.55 -933.91 -6.12 -15.13 16 3 C 0.01 0.17 7.45 86.41 0.64 0.82 16 4 C 0.06 1.21 4.04 46.48 0.19 1.40 16 5 N -0.53 -12.69 4.80 -875.57 -4.20 -16.89 16 6 C 0.06 1.19 4.52 86.33 0.39 1.58 16 7 C -0.11 -2.78 6.09 30.65 0.19 -2.59 16 8 C -0.11 -3.68 4.98 30.67 0.15 -3.53 16 9 C -0.08 -2.59 2.35 -10.74 -0.03 -2.61 16 10 H 0.06 2.14 8.14 -2.38 -0.02 2.13 16 11 C -0.09 -3.85 4.62 30.59 0.14 -3.71 16 12 C 0.03 1.51 4.73 29.85 0.14 1.65 16 13 C -0.54 -31.55 9.11 25.60 0.23 -31.31 16 14 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 15 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 16 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 17 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 18 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 C 0.07 2.06 4.68 86.33 0.40 2.46 16 22 C -0.04 -0.67 7.27 86.37 0.63 -0.04 16 23 H 0.04 0.52 7.63 -2.39 -0.02 0.50 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.08 1.31 5.73 -2.39 -0.01 1.30 16 28 H 0.11 2.25 8.12 -2.39 -0.02 2.23 16 29 H 0.04 0.80 6.29 -2.39 -0.02 0.79 16 30 H 0.09 1.58 5.86 -2.39 -0.01 1.57 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.72 6.70 -2.39 -0.02 1.70 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 37 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 38 H 0.00 -0.14 6.63 -2.39 -0.02 -0.15 16 39 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 40 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.08 2.04 8.11 -2.39 -0.02 2.02 16 42 H 0.08 1.43 5.21 -2.38 -0.01 1.42 16 43 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -64.12 324.50 -2.28 -66.40 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.95 Total: 10.50 kcal Atomic # 6 Polarization: -39.22 SS G_CDS: 4.78 Total: -34.44 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -10.04 Total: -89.40 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -64.12 -2.28 -66.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260972873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.634 kcal (2) G-P(sol) polarization free energy of solvation -64.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds