Wall clock time and date at job start Mon Mar 30 2020 03:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47964 * 110.99517 * 2 1 4 4 C 1.53929 * 86.17814 * 222.41659 * 3 2 1 5 5 C 1.53007 * 113.73456 * 138.08249 * 4 3 2 6 6 N 1.46901 * 109.47382 * 173.41365 * 5 4 3 7 7 C 1.46840 * 110.99885 * 59.89099 * 6 5 4 8 8 C 1.53033 * 109.52343 * 174.16003 * 7 6 5 9 9 C 1.53116 * 109.27863 * 59.18082 * 8 7 6 10 10 C 1.53123 * 109.16011 * 302.34865 * 9 8 7 11 11 C 1.46850 * 110.99927 * 295.68394 * 6 5 4 12 12 H 1.08996 * 109.46260 * 65.82067 * 11 6 5 13 13 C 1.53004 * 109.46096 * 305.85667 * 11 6 5 14 14 C 1.50698 * 109.46982 * 299.69237 * 13 11 6 15 15 H 1.08005 * 120.00334 * 355.72162 * 14 13 11 16 16 C 1.37881 * 120.00021 * 175.72565 * 14 13 11 17 17 N 1.31510 * 119.99886 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99849 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46986 * 90.00274 * 18 16 14 20 20 H 1.48493 * 109.47317 * 210.00481 * 18 16 14 21 21 H 1.48502 * 109.47222 * 330.00399 * 18 16 14 22 22 C 1.47952 * 110.99968 * 260.64396 * 2 1 3 23 23 H 1.08997 * 109.47135 * 60.00462 * 1 2 3 24 24 H 1.09006 * 109.46640 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47452 * 300.00009 * 1 2 3 26 26 H 1.09002 * 113.75335 * 108.09977 * 3 2 1 27 27 H 1.08997 * 113.76100 * 336.73807 * 3 2 1 28 28 H 1.09006 * 113.73893 * 269.25460 * 4 3 2 29 29 H 1.09006 * 109.46777 * 53.41002 * 5 4 3 30 30 H 1.08999 * 109.46493 * 293.41573 * 5 4 3 31 31 H 1.08996 * 109.46879 * 294.17595 * 7 6 5 32 32 H 1.09006 * 109.46422 * 54.14606 * 7 6 5 33 33 H 1.09004 * 109.50480 * 299.24191 * 8 7 6 34 34 H 1.09001 * 109.50791 * 179.12761 * 8 7 6 35 35 H 1.09004 * 109.52608 * 182.43902 * 9 8 7 36 36 H 1.09002 * 109.52268 * 62.25067 * 9 8 7 37 37 H 1.09001 * 109.49990 * 177.59524 * 10 9 8 38 38 H 1.09003 * 109.49820 * 297.70858 * 10 9 8 39 39 H 1.08998 * 109.47097 * 59.69556 * 13 11 6 40 40 H 1.09003 * 109.46729 * 179.69582 * 13 11 6 41 41 H 0.97002 * 119.99554 * 179.97438 * 17 16 14 42 42 H 1.09003 * 113.76767 * 23.26113 * 22 2 1 43 43 H 1.09007 * 113.76123 * 251.89397 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0210 0.8794 -1.0360 5 6 3.2611 1.8571 -2.1881 6 7 4.3580 1.3618 -3.0304 7 6 4.0377 0.0421 -3.5890 8 6 5.1330 -0.3766 -4.5723 9 6 6.4776 -0.4238 -3.8412 10 6 6.7645 0.9495 -3.2276 11 6 5.6218 1.3296 -2.2833 12 1 5.5519 0.5932 -1.4828 13 6 5.8944 2.7104 -1.6831 14 6 5.9980 3.7277 -2.7900 15 1 5.9501 3.4105 -3.8213 16 6 6.1538 5.0636 -2.4862 17 7 6.2437 5.9515 -3.4522 18 14 6.2360 5.6123 -0.7025 19 1 7.6487 5.5989 -0.2451 20 1 5.6897 6.9879 -0.5821 21 1 5.4348 4.6863 0.1377 22 6 1.9993 -0.2245 -1.3629 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.4459 1.6803 0.9483 27 1 1.3009 2.1198 -0.3940 28 1 3.9459 0.5070 -0.5953 29 1 3.5251 2.8351 -1.7856 30 1 2.3540 1.9433 -2.7863 31 1 3.9753 -0.6884 -2.7825 32 1 3.0813 0.0904 -4.1098 33 1 5.1868 0.3461 -5.3866 34 1 4.9030 -1.3629 -4.9751 35 1 7.2675 -0.6794 -4.5475 36 1 6.4368 -1.1741 -3.0517 37 1 7.7000 0.9105 -2.6697 38 1 6.8438 1.6930 -4.0208 39 1 5.0784 2.9832 -1.0139 40 1 6.8298 2.6852 -1.1241 41 1 6.3530 6.8913 -3.2384 42 1 1.3011 0.0441 -2.1557 43 1 2.4461 -1.2088 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260973945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:23 Heat of formation + Delta-G solvation = 34.386707 kcal Electronic energy + Delta-G solvation = -20129.112265 eV Core-core repulsion = 17402.989081 eV Total energy + Delta-G solvation = -2726.123185 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.25817 -38.28867 -33.57840 -33.09397 -31.23936 -30.19730 -27.48526 -26.42085 -25.94244 -23.62064 -23.06092 -21.46929 -20.29351 -19.73987 -18.32336 -16.56455 -16.09171 -15.39314 -15.18681 -14.60893 -14.59374 -14.02127 -13.78562 -13.51668 -13.20245 -12.93328 -12.64760 -12.36460 -12.29129 -11.66926 -11.57516 -11.38243 -11.28703 -11.18273 -10.86997 -10.61164 -10.52099 -10.50880 -10.20561 -10.06818 -9.79322 -9.54374 -9.26722 -8.91602 -8.80524 -8.41986 -7.39722 -5.90224 -3.84175 3.34935 3.43280 3.44789 3.98283 4.45506 4.54027 4.75064 4.84719 5.06233 5.28268 5.31511 5.35886 5.40715 5.43092 5.49526 5.50879 5.67285 5.69821 5.74752 5.78983 5.83937 5.94275 6.02145 6.03244 6.12706 6.21639 6.28523 6.30607 6.39101 6.50795 6.57919 6.66644 6.69997 6.85599 7.04509 7.13488 7.20485 7.34033 7.82736 7.89919 8.03861 8.73443 9.24149 9.72870 11.23303 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016478 B = 0.008477 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.848868 B = 3302.099291 C = 4537.980325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.489 5.489 3 C 0.007 3.993 4 C -0.149 4.149 5 C 0.065 3.935 6 N -0.505 5.505 7 C 0.054 3.946 8 C -0.115 4.115 9 C -0.121 4.121 10 C -0.106 4.106 11 C 0.104 3.896 12 H 0.015 0.985 13 C -0.016 4.016 14 C -0.485 4.485 15 H 0.084 0.916 16 C 0.062 3.938 17 N -0.907 5.907 18 Si 0.868 3.132 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.268 1.268 22 C 0.008 3.992 23 H 0.033 0.967 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.026 0.974 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.020 0.980 40 H 0.012 0.988 41 H 0.259 0.741 42 H 0.068 0.932 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.694 -12.690 3.289 15.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.211 5.211 3 C -0.122 4.122 4 C -0.170 4.170 5 C -0.063 4.063 6 N -0.227 5.227 7 C -0.074 4.074 8 C -0.153 4.153 9 C -0.159 4.159 10 C -0.144 4.144 11 C -0.004 4.004 12 H 0.033 0.967 13 C -0.054 4.054 14 C -0.524 4.524 15 H 0.102 0.898 16 C -0.138 4.138 17 N -0.548 5.548 18 Si 0.696 3.304 19 H -0.207 1.207 20 H -0.217 1.217 21 H -0.193 1.193 22 C -0.121 4.121 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.038 0.962 40 H 0.030 0.970 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.463 -12.629 3.390 15.056 hybrid contribution -0.484 0.402 1.076 1.247 sum -7.947 -12.228 4.467 15.252 Atomic orbital electron populations 1.22844 0.90285 1.01929 1.00904 1.68478 1.08546 1.19215 1.24850 1.23924 0.97129 0.90883 1.00254 1.23736 0.98163 0.97176 0.97924 1.22280 0.94052 0.98776 0.91221 1.61947 1.02130 1.23113 1.35559 1.22099 0.97879 0.90566 0.96839 1.21553 0.94954 1.00082 0.98675 1.21624 0.96880 0.98277 0.99086 1.21595 0.96949 0.95725 1.00132 1.21485 0.88587 0.97519 0.92774 0.96689 1.19805 0.95909 0.92694 0.96957 1.21065 1.47297 0.89791 0.94199 0.89789 1.25017 0.95593 0.97018 0.96142 1.69908 1.51830 1.01609 1.31405 0.86979 0.78488 0.77840 0.87087 1.20659 1.21724 1.19262 1.24137 0.97154 1.00174 0.90624 0.94812 0.91561 0.91624 0.89624 0.91123 0.88289 0.88413 0.91837 0.95558 0.91966 0.91125 0.92792 0.92687 0.93353 0.92629 0.89508 0.96207 0.97016 0.93131 0.91340 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.65 60.07 0.58 0.47 16 2 N -0.49 -6.45 6.56 -246.63 -1.62 -8.07 16 3 C 0.01 0.10 7.55 -2.77 -0.02 0.08 16 4 C -0.15 -2.20 3.08 -89.69 -0.28 -2.47 16 5 C 0.07 1.11 4.86 -3.82 -0.02 1.10 16 6 N -0.50 -9.22 4.27 -226.69 -0.97 -10.18 16 7 C 0.05 0.82 4.46 -3.84 -0.02 0.80 16 8 C -0.11 -1.67 6.09 -26.65 -0.16 -1.83 16 9 C -0.12 -1.82 6.00 -26.61 -0.16 -1.98 16 10 C -0.11 -1.96 5.13 -26.65 -0.14 -2.10 16 11 C 0.10 2.01 1.73 -67.72 -0.12 1.89 16 12 H 0.02 0.28 6.44 -51.93 -0.33 -0.05 16 13 C -0.02 -0.37 3.33 -27.88 -0.09 -0.47 16 14 C -0.49 -13.17 8.55 -34.44 -0.29 -13.46 16 15 H 0.08 2.50 6.77 -52.48 -0.36 2.15 16 16 C 0.06 1.76 5.47 -17.82 -0.10 1.67 16 17 N -0.91 -27.75 13.96 55.43 0.77 -26.97 16 18 Si 0.87 21.49 27.56 -169.99 -4.68 16.80 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 21 H -0.27 -6.33 6.42 56.52 0.36 -5.96 16 22 C 0.01 0.10 6.03 -2.77 -0.02 0.08 16 23 H 0.03 0.35 7.62 -51.93 -0.40 -0.05 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 28 H 0.10 1.60 6.25 -51.93 -0.32 1.28 16 29 H 0.10 1.95 5.89 -51.93 -0.31 1.64 16 30 H 0.06 1.01 7.81 -51.93 -0.41 0.61 16 31 H 0.03 0.38 5.98 -51.93 -0.31 0.07 16 32 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.85 6.50 -51.93 -0.34 1.52 16 39 H 0.02 0.46 4.97 -51.93 -0.26 0.20 16 40 H 0.01 0.27 7.79 -51.93 -0.40 -0.13 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.07 0.83 7.35 -51.93 -0.38 0.45 16 43 H 0.08 1.04 7.43 -51.93 -0.39 0.65 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -29.27 315.13 -10.16 -39.43 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.59 Total: 0.47 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -0.83 Total: -16.22 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -1.81 Total: -45.23 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.68 Total: 16.80 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.27 -10.16 -39.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.818 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds