Wall clock time and date at job start Mon Mar 30 2020 04:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46956 * 111.00312 * 2 1 4 4 C 1.53055 * 109.36597 * 176.81157 * 3 2 1 5 5 N 1.46963 * 109.36127 * 58.40384 * 4 3 2 6 6 C 1.46897 * 110.99605 * 176.81031 * 5 4 3 7 7 C 1.52995 * 109.47399 * 293.79876 * 6 5 4 8 8 C 1.53775 * 113.61504 * 85.86402 * 7 6 5 9 9 C 1.54056 * 86.98672 * 140.02265 * 8 7 6 10 10 C 1.53781 * 113.61543 * 183.47687 * 7 6 5 11 11 C 1.46956 * 110.87915 * 300.67841 * 5 4 3 12 12 C 1.46960 * 110.99816 * 236.19935 * 2 1 3 13 13 H 1.09001 * 109.48690 * 63.22629 * 12 2 1 14 14 C 1.52991 * 109.49077 * 303.15959 * 12 2 1 15 15 C 1.50700 * 109.47504 * 174.87993 * 14 12 2 16 16 H 1.08010 * 119.99497 * 4.74923 * 15 14 12 17 17 C 1.37874 * 120.00559 * 184.75057 * 15 14 12 18 18 N 1.31516 * 119.99908 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00318 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47209 * 60.00073 * 19 17 15 21 21 H 1.48501 * 109.47335 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47105 * 300.00271 * 19 17 15 23 23 H 1.08992 * 109.47363 * 190.32531 * 1 2 3 24 24 H 1.09007 * 109.46554 * 310.32593 * 1 2 3 25 25 H 1.09000 * 109.47529 * 70.31919 * 1 2 3 26 26 H 1.09001 * 109.48861 * 296.77942 * 3 2 1 27 27 H 1.09000 * 109.49017 * 56.82829 * 3 2 1 28 28 H 1.09001 * 109.48742 * 298.43745 * 4 3 2 29 29 H 1.09002 * 109.48892 * 178.36611 * 4 3 2 30 30 H 1.08999 * 109.46744 * 173.79838 * 6 5 4 31 31 H 1.09003 * 109.47051 * 53.80371 * 6 5 4 32 32 H 1.08999 * 112.85006 * 314.66976 * 7 6 5 33 33 H 1.09001 * 113.61706 * 254.61685 * 8 7 6 34 34 H 1.09002 * 113.61613 * 25.51541 * 8 7 6 35 35 H 1.09004 * 113.61541 * 220.02691 * 9 8 7 36 36 H 1.08999 * 113.61207 * 89.11712 * 9 8 7 37 37 H 1.08998 * 113.61174 * 334.47405 * 10 7 6 38 38 H 1.08993 * 113.61933 * 105.30223 * 10 7 6 39 39 H 1.09000 * 109.48573 * 179.29066 * 11 5 4 40 40 H 1.09001 * 109.48861 * 299.35652 * 11 5 4 41 41 H 1.08998 * 109.47144 * 294.88059 * 14 12 2 42 42 H 1.08998 * 109.47432 * 54.87825 * 14 12 2 43 43 H 0.96991 * 120.00244 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0803 5 7 4.0501 0.5658 -1.0599 6 6 5.5191 0.5658 -1.0599 7 6 6.0291 1.9863 -1.3103 8 6 6.1387 2.8356 -0.0331 9 6 7.4546 3.3895 -0.6118 10 6 7.5605 2.0817 -1.4139 11 6 3.5234 -0.8061 -1.0599 12 6 1.9956 -0.7633 -1.1401 13 1 1.6937 -0.2820 -2.0704 14 6 1.4420 -2.1889 -1.0994 15 6 1.8803 -2.9335 -2.3341 16 1 2.5547 -2.4655 -3.0360 17 6 1.4203 -4.2121 -2.5678 18 7 0.5994 -4.7822 -1.7129 19 14 1.9630 -5.1347 -4.0986 20 1 3.4408 -5.2811 -4.0906 21 1 1.3331 -6.4794 -4.1156 22 1 1.5472 -4.3775 -5.3064 23 1 -0.3634 -1.0109 0.1842 24 1 -0.3633 0.6651 0.7835 25 1 -0.3634 0.3461 -0.9676 26 1 1.6938 1.8773 -0.9174 27 1 1.6012 1.9129 0.8601 28 1 3.8254 0.8478 1.0106 29 1 3.9179 2.3448 0.0512 30 1 5.8823 -0.0948 -1.8471 31 1 5.8824 0.2142 -0.0942 32 1 5.5045 2.4871 -2.1240 33 1 5.3525 3.5845 0.0621 34 1 6.2745 2.2456 0.8733 35 1 8.2421 3.5104 0.1321 36 1 7.3196 4.2739 -1.2344 37 1 8.0843 1.2860 -0.8843 38 1 7.9214 2.2209 -2.4329 39 1 3.9177 -1.3470 -1.9202 40 1 3.8253 -1.3116 -0.1425 41 1 1.8195 -2.7001 -0.2137 42 1 0.3532 -2.1551 -1.0629 43 1 0.2755 -5.6815 -1.8775 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260974765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:09 Heat of formation + Delta-G solvation = 22.529843 kcal Electronic energy + Delta-G solvation = -19500.828557 eV Core-core repulsion = 16774.191220 eV Total energy + Delta-G solvation = -2726.637337 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.56062 -38.21431 -34.87712 -33.24489 -31.11340 -29.37326 -27.37475 -26.08540 -25.53270 -23.76724 -23.07420 -22.12173 -20.31336 -19.51103 -18.72521 -16.46139 -16.18478 -15.17100 -14.97626 -14.67329 -14.42766 -14.37712 -13.87360 -13.59424 -13.34445 -12.72291 -12.51293 -12.13581 -12.11199 -11.98118 -11.54944 -11.29537 -11.26091 -11.16980 -10.84813 -10.81669 -10.62332 -10.53680 -10.26225 -10.17505 -10.09777 -9.79054 -9.15619 -9.02926 -8.31911 -7.93757 -7.62576 -5.98294 -4.00100 3.34575 3.39043 3.41521 4.21049 4.42859 4.58703 4.61355 4.68486 4.74369 4.85337 5.35945 5.38620 5.42028 5.53766 5.57343 5.61309 5.67184 5.68709 5.77922 5.81452 5.85685 5.93351 5.98648 6.03031 6.05189 6.13440 6.23031 6.27880 6.31060 6.47997 6.50569 6.58791 6.77700 6.94923 7.42570 7.50897 7.60687 7.65483 7.85203 7.88909 8.09204 8.45108 9.05958 9.63315 11.13112 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.005580 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.645472 B = 5016.811799 C = 6087.500982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.544 5.544 3 C 0.056 3.944 4 C 0.056 3.944 5 N -0.542 5.542 6 C 0.065 3.935 7 C -0.102 4.102 8 C -0.139 4.139 9 C -0.143 4.143 10 C -0.137 4.137 11 C 0.074 3.926 12 C 0.095 3.905 13 H 0.037 0.963 14 C 0.031 3.969 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.020 0.980 26 H 0.033 0.967 27 H 0.067 0.933 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.034 0.966 41 H 0.019 0.981 42 H 0.026 0.974 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.202 14.619 3.327 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.269 5.269 3 C -0.073 4.073 4 C -0.072 4.072 5 N -0.267 5.267 6 C -0.063 4.063 7 C -0.121 4.121 8 C -0.176 4.176 9 C -0.180 4.180 10 C -0.175 4.175 11 C -0.054 4.054 12 C -0.013 4.013 13 H 0.055 0.945 14 C -0.007 4.007 15 C -0.557 4.557 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.096 0.904 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.037 0.963 42 H 0.044 0.956 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.096 14.444 3.362 17.397 hybrid contribution 0.201 -0.625 -0.822 1.052 sum 9.297 13.819 2.540 16.848 Atomic orbital electron populations 1.22311 0.87826 1.02690 0.99024 1.62230 1.07584 1.12016 1.45079 1.22118 0.94541 0.90794 0.99806 1.22236 0.94549 0.98344 0.92050 1.62241 1.06534 1.15655 1.42255 1.22059 0.88070 0.96163 1.00017 1.22555 0.95280 0.95897 0.98383 1.23120 0.97328 0.99439 0.97737 1.22855 0.98051 0.97463 0.99651 1.22909 0.96429 0.97762 1.00388 1.22190 0.95231 0.86794 1.01149 1.21895 0.92896 0.97015 0.89460 0.94535 1.19175 0.96623 0.87808 0.97110 1.21166 1.28193 0.99382 1.06928 0.92620 1.24977 0.95115 0.97620 0.96501 1.69955 1.32785 1.14674 1.35926 0.86684 0.78872 0.78955 0.83646 1.20265 1.21342 1.20279 0.90351 0.92883 0.96097 0.94890 0.91444 0.94773 0.90513 0.90823 0.95124 0.88606 0.91529 0.90401 0.91840 0.90417 0.90297 0.91605 0.89656 0.94760 0.96253 0.95553 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 8.98 60.06 0.54 1.07 16 2 N -0.54 -10.45 4.78 -234.73 -1.12 -11.57 16 3 C 0.06 0.90 5.61 -3.76 -0.02 0.88 16 4 C 0.06 0.85 5.12 -3.76 -0.02 0.83 16 5 N -0.54 -9.01 4.71 -234.46 -1.10 -10.12 16 6 C 0.07 0.91 4.87 -3.83 -0.02 0.89 16 7 C -0.10 -1.17 3.50 -89.81 -0.31 -1.49 16 8 C -0.14 -1.40 5.85 -25.78 -0.15 -1.55 16 9 C -0.14 -1.27 8.09 -25.77 -0.21 -1.47 16 10 C -0.14 -1.33 7.64 -25.91 -0.20 -1.53 16 11 C 0.07 1.47 4.67 -3.77 -0.02 1.45 16 12 C 0.10 2.07 1.97 -67.66 -0.13 1.93 16 13 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 14 C 0.03 0.79 4.27 -27.89 -0.12 0.68 16 15 C -0.52 -14.44 8.51 -34.44 -0.29 -14.73 16 16 H 0.06 1.51 6.91 -52.48 -0.36 1.15 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 19 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 H 0.08 1.53 6.53 -51.93 -0.34 1.19 16 24 H 0.05 0.79 8.02 -51.92 -0.42 0.38 16 25 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.99 5.04 -51.93 -0.26 0.73 16 30 H 0.07 1.05 8.03 -51.93 -0.42 0.64 16 31 H 0.03 0.43 7.85 -51.93 -0.41 0.02 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.07 0.65 7.21 -51.93 -0.37 0.28 16 34 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.80 6.85 -51.93 -0.36 1.45 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.03 0.72 6.22 -51.93 -0.32 0.40 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -29.25 324.63 -10.54 -39.79 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -7.87 Total: -2.16 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -1.05 Total: -11.45 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -1.49 Total: -47.67 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.25 -10.54 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260974765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.318 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds