Wall clock time and date at job start Mon Mar 30 2020 04:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46956 * 111.00312 * 2 1 4 4 C 1.53055 * 109.36597 * 176.81157 * 3 2 1 5 5 N 1.46963 * 109.36127 * 58.40384 * 4 3 2 6 6 C 1.46897 * 110.99605 * 176.81031 * 5 4 3 7 7 C 1.52995 * 109.47399 * 293.79876 * 6 5 4 8 8 C 1.53775 * 113.61504 * 85.86402 * 7 6 5 9 9 C 1.54056 * 86.98672 * 140.02265 * 8 7 6 10 10 C 1.53781 * 113.61543 * 183.47687 * 7 6 5 11 11 C 1.46956 * 110.87915 * 300.67841 * 5 4 3 12 12 C 1.46960 * 110.99816 * 236.19935 * 2 1 3 13 13 H 1.09001 * 109.48690 * 63.22629 * 12 2 1 14 14 C 1.52991 * 109.49077 * 303.15959 * 12 2 1 15 15 C 1.50700 * 109.47504 * 174.87993 * 14 12 2 16 16 H 1.08010 * 119.99497 * 4.74923 * 15 14 12 17 17 C 1.37874 * 120.00559 * 184.75057 * 15 14 12 18 18 N 1.31516 * 119.99908 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00318 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47209 * 60.00073 * 19 17 15 21 21 H 1.48501 * 109.47335 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47105 * 300.00271 * 19 17 15 23 23 H 1.08992 * 109.47363 * 190.32531 * 1 2 3 24 24 H 1.09007 * 109.46554 * 310.32593 * 1 2 3 25 25 H 1.09000 * 109.47529 * 70.31919 * 1 2 3 26 26 H 1.09001 * 109.48861 * 296.77942 * 3 2 1 27 27 H 1.09000 * 109.49017 * 56.82829 * 3 2 1 28 28 H 1.09001 * 109.48742 * 298.43745 * 4 3 2 29 29 H 1.09002 * 109.48892 * 178.36611 * 4 3 2 30 30 H 1.08999 * 109.46744 * 173.79838 * 6 5 4 31 31 H 1.09003 * 109.47051 * 53.80371 * 6 5 4 32 32 H 1.08999 * 112.85006 * 314.66976 * 7 6 5 33 33 H 1.09001 * 113.61706 * 254.61685 * 8 7 6 34 34 H 1.09002 * 113.61613 * 25.51541 * 8 7 6 35 35 H 1.09004 * 113.61541 * 220.02691 * 9 8 7 36 36 H 1.08999 * 113.61207 * 89.11712 * 9 8 7 37 37 H 1.08998 * 113.61174 * 334.47405 * 10 7 6 38 38 H 1.08993 * 113.61933 * 105.30223 * 10 7 6 39 39 H 1.09000 * 109.48573 * 179.29066 * 11 5 4 40 40 H 1.09001 * 109.48861 * 299.35652 * 11 5 4 41 41 H 1.08998 * 109.47144 * 294.88059 * 14 12 2 42 42 H 1.08998 * 109.47432 * 54.87825 * 14 12 2 43 43 H 0.96991 * 120.00244 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0803 5 7 4.0501 0.5658 -1.0599 6 6 5.5191 0.5658 -1.0599 7 6 6.0291 1.9863 -1.3103 8 6 6.1387 2.8356 -0.0331 9 6 7.4546 3.3895 -0.6118 10 6 7.5605 2.0817 -1.4139 11 6 3.5234 -0.8061 -1.0599 12 6 1.9956 -0.7633 -1.1401 13 1 1.6937 -0.2820 -2.0704 14 6 1.4420 -2.1889 -1.0994 15 6 1.8803 -2.9335 -2.3341 16 1 2.5547 -2.4655 -3.0360 17 6 1.4203 -4.2121 -2.5678 18 7 0.5994 -4.7822 -1.7129 19 14 1.9630 -5.1347 -4.0986 20 1 3.4408 -5.2811 -4.0906 21 1 1.3331 -6.4794 -4.1156 22 1 1.5472 -4.3775 -5.3064 23 1 -0.3634 -1.0109 0.1842 24 1 -0.3633 0.6651 0.7835 25 1 -0.3634 0.3461 -0.9676 26 1 1.6938 1.8773 -0.9174 27 1 1.6012 1.9129 0.8601 28 1 3.8254 0.8478 1.0106 29 1 3.9179 2.3448 0.0512 30 1 5.8823 -0.0948 -1.8471 31 1 5.8824 0.2142 -0.0942 32 1 5.5045 2.4871 -2.1240 33 1 5.3525 3.5845 0.0621 34 1 6.2745 2.2456 0.8733 35 1 8.2421 3.5104 0.1321 36 1 7.3196 4.2739 -1.2344 37 1 8.0843 1.2860 -0.8843 38 1 7.9214 2.2209 -2.4329 39 1 3.9177 -1.3470 -1.9202 40 1 3.8253 -1.3116 -0.1425 41 1 1.8195 -2.7001 -0.2137 42 1 0.3532 -2.1551 -1.0629 43 1 0.2755 -5.6815 -1.8775 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260974765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:09 Heat of formation + Delta-G solvation = 3.668337 kcal Electronic energy + Delta-G solvation = -19501.646453 eV Core-core repulsion = 16774.191220 eV Total energy + Delta-G solvation = -2727.455233 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.77099 -39.38621 -36.26733 -35.25507 -32.94487 -30.61780 -29.09147 -27.35078 -26.54624 -25.51431 -24.40498 -23.51343 -21.75827 -20.66267 -20.01825 -18.59127 -17.32382 -16.60391 -16.38744 -16.06331 -15.96528 -15.74019 -15.40279 -14.90525 -14.62586 -14.11826 -13.94267 -13.75778 -13.31495 -13.24703 -13.03939 -12.93985 -12.63634 -12.57286 -12.50750 -12.24369 -12.21153 -11.83482 -11.71070 -11.44813 -11.28069 -11.14744 -10.98696 -10.72340 -10.50433 -9.32827 -9.16211 -8.18571 -6.28516 1.40076 1.42737 1.50562 2.40815 2.93979 3.09514 3.16307 3.73617 3.82992 3.91051 3.99772 4.06519 4.16639 4.25226 4.35421 4.41648 4.51482 4.59710 4.66291 4.68342 4.73504 4.82096 4.87595 4.90748 4.92663 4.96924 5.02419 5.04426 5.12630 5.13445 5.15604 5.23458 5.40336 5.45639 5.65168 5.67140 5.76108 6.04159 6.07839 6.23378 6.33852 6.37706 6.86179 7.39773 8.93441 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.005580 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.645472 B = 5016.811799 C = 6087.500982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.556 5.556 3 C 0.055 3.945 4 C 0.059 3.941 5 N -0.546 5.546 6 C 0.065 3.935 7 C -0.104 4.104 8 C -0.138 4.138 9 C -0.133 4.133 10 C -0.135 4.135 11 C 0.086 3.914 12 C 0.108 3.892 13 H 0.020 0.980 14 C 0.042 3.958 15 C -0.534 4.534 16 H 0.059 0.941 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.961 3.039 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.268 1.268 23 H 0.050 0.950 24 H 0.089 0.911 25 H 0.017 0.983 26 H 0.032 0.968 27 H 0.098 0.902 28 H 0.029 0.971 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.031 0.969 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.018 0.982 41 H -0.013 1.013 42 H 0.003 0.997 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.543 16.516 3.053 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.281 5.281 3 C -0.073 4.073 4 C -0.069 4.069 5 N -0.270 5.270 6 C -0.063 4.063 7 C -0.123 4.123 8 C -0.175 4.175 9 C -0.171 4.171 10 C -0.173 4.173 11 C -0.042 4.042 12 C -0.001 4.001 13 H 0.038 0.962 14 C 0.004 3.996 15 C -0.572 4.572 16 H 0.077 0.923 17 C -0.193 4.193 18 N -0.571 5.571 19 Si 0.786 3.214 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.193 1.193 23 H 0.069 0.931 24 H 0.107 0.893 25 H 0.036 0.964 26 H 0.050 0.950 27 H 0.116 0.884 28 H 0.047 0.953 29 H 0.124 0.876 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.036 0.964 41 H 0.006 0.994 42 H 0.021 0.979 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.450 16.368 3.094 19.665 hybrid contribution -0.237 -1.186 -0.685 1.390 sum 10.213 15.182 2.408 18.456 Atomic orbital electron populations 1.22285 0.87167 1.01933 1.00125 1.62190 1.08376 1.14089 1.43436 1.22279 0.95125 0.88799 1.01085 1.22323 0.94023 0.99448 0.91057 1.62240 1.08261 1.13250 1.43258 1.22142 0.86264 0.98110 0.99739 1.22536 0.96448 0.94080 0.99226 1.23114 0.98362 0.99215 0.96806 1.22823 0.97523 0.97134 0.99592 1.22915 0.94822 0.98479 1.01041 1.21870 0.94003 0.88845 0.99476 1.21527 0.94047 0.94635 0.89871 0.96175 1.18968 0.95084 0.90361 0.95205 1.21512 1.28220 0.99985 1.07523 0.92298 1.25888 0.95025 0.98592 0.99835 1.70093 1.33956 1.15126 1.37974 0.85563 0.78821 0.77513 0.79539 1.19211 1.20831 1.19320 0.93075 0.89278 0.96397 0.94991 0.88401 0.95293 0.87569 0.91705 0.95101 0.89196 0.90874 0.90571 0.90770 0.89508 0.90219 0.91077 0.91410 0.96407 0.99430 0.97896 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.17 8.98 127.69 1.15 2.32 16 2 N -0.56 -21.29 4.78 -896.55 -4.29 -25.58 16 3 C 0.05 1.65 5.61 86.31 0.48 2.13 16 4 C 0.06 1.67 5.12 86.31 0.44 2.11 16 5 N -0.55 -17.78 4.71 -895.70 -4.22 -22.00 16 6 C 0.07 1.76 4.87 86.30 0.42 2.18 16 7 C -0.10 -2.18 3.50 -10.27 -0.04 -2.21 16 8 C -0.14 -2.38 5.85 31.21 0.18 -2.19 16 9 C -0.13 -1.95 8.09 31.22 0.25 -1.69 16 10 C -0.13 -2.30 7.64 31.12 0.24 -2.07 16 11 C 0.09 3.54 4.67 86.31 0.40 3.94 16 12 C 0.11 4.82 1.97 44.92 0.09 4.91 16 13 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 14 C 0.04 2.27 4.27 29.84 0.13 2.40 16 15 C -0.53 -30.68 8.51 25.60 0.22 -30.46 16 16 H 0.06 3.27 6.91 -2.91 -0.02 3.25 16 17 C 0.00 0.26 5.46 84.65 0.46 0.73 16 18 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 19 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H 0.05 2.08 6.53 -2.39 -0.02 2.06 16 24 H 0.09 2.50 8.02 -2.38 -0.02 2.48 16 25 H 0.02 0.63 8.12 -2.39 -0.02 0.61 16 26 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.10 2.38 8.07 -2.39 -0.02 2.36 16 28 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 2.40 5.04 -2.39 -0.01 2.39 16 30 H 0.06 1.85 8.03 -2.39 -0.02 1.83 16 31 H 0.03 0.84 7.85 -2.39 -0.02 0.82 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 1.18 7.21 -2.39 -0.02 1.16 16 34 H 0.08 1.37 7.92 -2.39 -0.02 1.35 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 2.96 6.85 -2.39 -0.02 2.95 16 40 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 41 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 42 H 0.00 0.16 6.22 -2.39 -0.01 0.15 16 43 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -64.42 324.63 -0.82 -65.24 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.95 Total: 10.37 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 4.43 Total: -17.90 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -8.22 Total: -104.48 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -64.42 -0.82 -65.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260974765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.911 kcal (2) G-P(sol) polarization free energy of solvation -64.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds