Wall clock time and date at job start Mon Mar 30 2020 04:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46954 * 111.00273 * 2 1 4 4 C 1.53049 * 109.37015 * 183.18781 * 3 2 1 5 5 N 1.46958 * 109.35955 * 301.59581 * 4 3 2 6 6 C 1.46907 * 110.99592 * 183.18909 * 5 4 3 7 7 C 1.52998 * 109.47317 * 66.04996 * 6 5 4 8 8 C 1.53781 * 113.61123 * 272.49455 * 7 6 5 9 9 C 1.53774 * 87.08325 * 220.01702 * 8 7 6 10 10 C 1.53779 * 113.61412 * 175.00138 * 7 6 5 11 11 C 1.46955 * 110.88200 * 59.32206 * 5 4 3 12 12 C 1.46959 * 111.00020 * 123.79548 * 2 1 3 13 13 H 1.08996 * 109.49042 * 296.78274 * 12 2 1 14 14 C 1.53005 * 109.48730 * 56.84679 * 12 2 1 15 15 C 1.50701 * 109.47058 * 185.25867 * 14 12 2 16 16 H 1.08004 * 120.00242 * 3.11891 * 15 14 12 17 17 C 1.37878 * 120.00115 * 183.11763 * 15 14 12 18 18 N 1.31512 * 120.00322 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99866 * 0.02562 * 17 15 14 20 20 H 1.48490 * 109.47209 * 89.99672 * 19 17 15 21 21 H 1.48497 * 109.46754 * 209.99792 * 19 17 15 22 22 H 1.48501 * 109.46722 * 329.99361 * 19 17 15 23 23 H 1.08998 * 109.47329 * 289.35187 * 1 2 3 24 24 H 1.09002 * 109.47282 * 49.35676 * 1 2 3 25 25 H 1.09003 * 109.46713 * 169.35745 * 1 2 3 26 26 H 1.09004 * 109.48685 * 303.15869 * 3 2 1 27 27 H 1.09005 * 109.48841 * 63.19118 * 3 2 1 28 28 H 1.08996 * 109.48938 * 61.56446 * 4 3 2 29 29 H 1.08998 * 109.48960 * 181.63312 * 4 3 2 30 30 H 1.09000 * 109.46946 * 186.04619 * 6 5 4 31 31 H 1.08994 * 109.46830 * 306.04183 * 6 5 4 32 32 H 1.08998 * 112.85179 * 43.79948 * 7 6 5 33 33 H 1.08997 * 113.61731 * 334.56941 * 8 7 6 34 34 H 1.09000 * 113.61522 * 105.46767 * 8 7 6 35 35 H 1.08994 * 113.61872 * 270.88654 * 9 8 7 36 36 H 1.09000 * 113.61558 * 139.97729 * 9 8 7 37 37 H 1.09001 * 113.61204 * 254.52512 * 10 7 6 38 38 H 1.09001 * 113.61574 * 25.42553 * 10 7 6 39 39 H 1.09005 * 109.48946 * 180.71192 * 11 5 4 40 40 H 1.08998 * 109.48867 * 60.64528 * 11 5 4 41 41 H 1.08997 * 109.46955 * 305.25497 * 14 12 2 42 42 H 1.08997 * 109.46615 * 65.26075 * 14 12 2 43 43 H 0.96998 * 120.00255 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0500 0.5660 1.0599 6 6 5.5191 0.5660 1.0599 7 6 6.0290 1.9873 1.3066 8 6 6.1765 2.8203 0.0224 9 6 7.4777 3.3752 0.6255 10 6 7.5577 2.0775 1.4469 11 6 3.5234 -0.8060 1.0599 12 6 1.9956 -0.7631 1.1402 13 1 1.6937 -0.2820 2.0704 14 6 1.4421 -2.1890 1.0994 15 6 1.8776 -2.9324 2.3358 16 1 2.4454 -2.4230 3.1003 17 6 1.5511 -4.2629 2.4910 18 7 1.9315 -4.9119 3.5698 19 14 0.5695 -5.1443 1.1684 20 1 1.4998 -5.7444 0.1788 21 1 -0.2494 -6.2152 1.7908 22 1 -0.3222 -4.1736 0.4844 23 1 -0.3634 0.3405 0.9696 24 1 -0.3634 0.6694 -0.7798 25 1 -0.3633 -1.0100 -0.1898 26 1 1.6013 1.9128 -0.8603 27 1 1.6933 1.8775 0.9171 28 1 3.8254 0.8480 -1.0105 29 1 3.9177 2.3448 -0.0512 30 1 5.8824 -0.0924 1.8490 31 1 5.8824 0.2119 0.0953 32 1 5.4866 2.4997 2.1011 33 1 6.3321 2.2186 -0.8730 34 1 5.3975 3.5725 -0.1020 35 1 7.3314 4.2682 1.2331 36 1 8.2840 3.4830 -0.1000 37 1 7.8938 2.2301 2.4726 38 1 8.0909 1.2726 0.9410 39 1 3.9177 -1.3469 1.9203 40 1 3.8254 -1.3114 0.1426 41 1 0.3534 -2.1551 1.0604 42 1 1.8217 -2.7008 0.2151 43 1 1.7021 -5.8480 3.6788 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260974766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:12 Heat of formation + Delta-G solvation = 25.572220 kcal Electronic energy + Delta-G solvation = -19539.639006 eV Core-core repulsion = 16813.133596 eV Total energy + Delta-G solvation = -2726.505409 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.59409 -38.29524 -34.95924 -33.24157 -31.31960 -29.43525 -27.79806 -26.18686 -25.60426 -23.66949 -23.11751 -22.01468 -20.22565 -19.51209 -18.80007 -16.89694 -16.18669 -15.19860 -15.00880 -14.73010 -14.55920 -14.33283 -13.71796 -13.68777 -13.36200 -12.80702 -12.62599 -12.50985 -12.18854 -12.06778 -11.67347 -11.45034 -11.40968 -11.20694 -10.93703 -10.81115 -10.57285 -10.42271 -10.25495 -10.13019 -9.99886 -9.74920 -9.46725 -9.10189 -8.51345 -7.97729 -7.74811 -6.02975 -4.00621 3.32625 3.39978 3.44391 4.18807 4.45281 4.47006 4.58978 4.67579 4.74398 4.85316 5.30708 5.30726 5.39748 5.49901 5.52940 5.60844 5.63393 5.67118 5.75473 5.80726 5.81413 5.89074 5.92624 5.94885 6.01872 6.10034 6.16134 6.21600 6.26636 6.34577 6.43546 6.49700 6.67131 6.82980 7.12516 7.34494 7.43765 7.45659 7.62736 7.71450 7.89142 8.54915 9.01685 9.59606 11.10106 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026217 B = 0.005476 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.735569 B = 5111.827132 C = 5923.928209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.056 3.944 5 N -0.542 5.542 6 C 0.065 3.935 7 C -0.102 4.102 8 C -0.139 4.139 9 C -0.143 4.143 10 C -0.137 4.137 11 C 0.073 3.927 12 C 0.104 3.896 13 H 0.043 0.957 14 C -0.005 4.005 15 C -0.517 4.517 16 H 0.074 0.926 17 C 0.069 3.931 18 N -0.903 5.903 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.266 1.266 23 H 0.023 0.977 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.033 0.967 41 H 0.020 0.980 42 H 0.018 0.982 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.414 15.139 -7.771 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.272 5.272 3 C -0.072 4.072 4 C -0.072 4.072 5 N -0.266 5.266 6 C -0.063 4.063 7 C -0.121 4.121 8 C -0.176 4.176 9 C -0.180 4.180 10 C -0.175 4.175 11 C -0.054 4.054 12 C -0.004 4.004 13 H 0.061 0.939 14 C -0.043 4.043 15 C -0.555 4.555 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.542 5.542 19 Si 0.706 3.294 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.191 1.191 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.052 0.948 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.403 14.958 -7.683 17.993 hybrid contribution -0.546 -0.646 -0.621 1.049 sum 5.857 14.312 -8.304 17.553 Atomic orbital electron populations 1.22318 0.87975 1.02343 0.99393 1.62238 1.07472 1.12457 1.45045 1.22113 0.94640 0.90436 0.99967 1.22224 0.94413 0.98452 0.92111 1.62224 1.06723 1.15524 1.42127 1.22066 0.87853 0.96238 1.00115 1.22561 0.95394 0.95933 0.98230 1.23073 0.97442 0.99496 0.97635 1.22802 0.98101 0.97569 0.99551 1.22915 0.96426 0.97783 1.00354 1.22185 0.94767 0.86971 1.01476 1.21664 0.93264 0.95676 0.89813 0.93906 1.19653 0.96191 0.90823 0.97653 1.21081 1.35351 0.95292 1.03819 0.90805 1.24975 0.95478 0.97422 0.95352 1.69909 1.46782 1.10232 1.27247 0.86800 0.80787 0.79531 0.82299 1.20321 1.21508 1.19077 0.95792 0.92632 0.90880 0.91351 0.94671 0.94774 0.90469 0.90623 0.95120 0.88537 0.90439 0.91607 0.90409 0.91850 0.91542 0.90269 0.89055 0.94840 0.96189 0.96337 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 8.98 60.06 0.54 1.00 16 2 N -0.55 -9.94 4.78 -234.73 -1.12 -11.06 16 3 C 0.06 0.87 5.60 -3.77 -0.02 0.85 16 4 C 0.06 0.82 5.14 -3.77 -0.02 0.80 16 5 N -0.54 -8.89 4.71 -234.47 -1.10 -10.00 16 6 C 0.07 0.91 4.87 -3.82 -0.02 0.90 16 7 C -0.10 -1.18 3.45 -89.81 -0.31 -1.49 16 8 C -0.14 -1.39 5.93 -25.92 -0.15 -1.54 16 9 C -0.14 -1.27 8.08 -25.92 -0.21 -1.48 16 10 C -0.14 -1.35 7.64 -25.92 -0.20 -1.54 16 11 C 0.07 1.45 4.68 -3.77 -0.02 1.43 16 12 C 0.10 2.17 1.96 -67.65 -0.13 2.04 16 13 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.01 -0.12 3.34 -27.88 -0.09 -0.22 16 15 C -0.52 -14.53 8.93 -34.44 -0.31 -14.84 16 16 H 0.07 2.23 7.44 -52.48 -0.39 1.84 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 19 Si 0.88 21.85 27.41 -169.99 -4.66 17.19 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.27 -6.39 6.63 56.52 0.37 -6.02 16 23 H 0.02 0.39 8.11 -51.93 -0.42 -0.03 16 24 H 0.05 0.76 8.01 -51.93 -0.42 0.35 16 25 H 0.07 1.29 6.54 -51.93 -0.34 0.95 16 26 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.97 5.15 -51.93 -0.27 0.70 16 30 H 0.08 1.11 8.03 -51.93 -0.42 0.69 16 31 H 0.03 0.43 7.82 -51.93 -0.41 0.02 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 34 H 0.07 0.63 7.25 -51.93 -0.38 0.26 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.09 1.98 7.02 -51.93 -0.36 1.61 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.02 0.49 5.50 -51.93 -0.29 0.20 16 42 H 0.02 0.45 7.40 -51.93 -0.38 0.07 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 LS Contribution 321.57 15.07 4.85 4.85 Total: -1.00 -29.70 321.57 -10.17 -39.86 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.86 Total: -1.74 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -1.04 Total: -12.19 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -1.45 Total: -47.97 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.66 Total: 17.19 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.70 -10.17 -39.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260974766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.437 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds