Wall clock time and date at job start Mon Mar 30 2020 04:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46954 * 111.00273 * 2 1 4 4 C 1.53049 * 109.37015 * 183.18781 * 3 2 1 5 5 N 1.46958 * 109.35955 * 301.59581 * 4 3 2 6 6 C 1.46907 * 110.99592 * 183.18909 * 5 4 3 7 7 C 1.52998 * 109.47317 * 66.04996 * 6 5 4 8 8 C 1.53781 * 113.61123 * 272.49455 * 7 6 5 9 9 C 1.53774 * 87.08325 * 220.01702 * 8 7 6 10 10 C 1.53779 * 113.61412 * 175.00138 * 7 6 5 11 11 C 1.46955 * 110.88200 * 59.32206 * 5 4 3 12 12 C 1.46959 * 111.00020 * 123.79548 * 2 1 3 13 13 H 1.08996 * 109.49042 * 296.78274 * 12 2 1 14 14 C 1.53005 * 109.48730 * 56.84679 * 12 2 1 15 15 C 1.50701 * 109.47058 * 185.25867 * 14 12 2 16 16 H 1.08004 * 120.00242 * 3.11891 * 15 14 12 17 17 C 1.37878 * 120.00115 * 183.11763 * 15 14 12 18 18 N 1.31512 * 120.00322 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99866 * 0.02562 * 17 15 14 20 20 H 1.48490 * 109.47209 * 89.99672 * 19 17 15 21 21 H 1.48497 * 109.46754 * 209.99792 * 19 17 15 22 22 H 1.48501 * 109.46722 * 329.99361 * 19 17 15 23 23 H 1.08998 * 109.47329 * 289.35187 * 1 2 3 24 24 H 1.09002 * 109.47282 * 49.35676 * 1 2 3 25 25 H 1.09003 * 109.46713 * 169.35745 * 1 2 3 26 26 H 1.09004 * 109.48685 * 303.15869 * 3 2 1 27 27 H 1.09005 * 109.48841 * 63.19118 * 3 2 1 28 28 H 1.08996 * 109.48938 * 61.56446 * 4 3 2 29 29 H 1.08998 * 109.48960 * 181.63312 * 4 3 2 30 30 H 1.09000 * 109.46946 * 186.04619 * 6 5 4 31 31 H 1.08994 * 109.46830 * 306.04183 * 6 5 4 32 32 H 1.08998 * 112.85179 * 43.79948 * 7 6 5 33 33 H 1.08997 * 113.61731 * 334.56941 * 8 7 6 34 34 H 1.09000 * 113.61522 * 105.46767 * 8 7 6 35 35 H 1.08994 * 113.61872 * 270.88654 * 9 8 7 36 36 H 1.09000 * 113.61558 * 139.97729 * 9 8 7 37 37 H 1.09001 * 113.61204 * 254.52512 * 10 7 6 38 38 H 1.09001 * 113.61574 * 25.42553 * 10 7 6 39 39 H 1.09005 * 109.48946 * 180.71192 * 11 5 4 40 40 H 1.08998 * 109.48867 * 60.64528 * 11 5 4 41 41 H 1.08997 * 109.46955 * 305.25497 * 14 12 2 42 42 H 1.08997 * 109.46615 * 65.26075 * 14 12 2 43 43 H 0.96998 * 120.00255 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0500 0.5660 1.0599 6 6 5.5191 0.5660 1.0599 7 6 6.0290 1.9873 1.3066 8 6 6.1765 2.8203 0.0224 9 6 7.4777 3.3752 0.6255 10 6 7.5577 2.0775 1.4469 11 6 3.5234 -0.8060 1.0599 12 6 1.9956 -0.7631 1.1402 13 1 1.6937 -0.2820 2.0704 14 6 1.4421 -2.1890 1.0994 15 6 1.8776 -2.9324 2.3358 16 1 2.4454 -2.4230 3.1003 17 6 1.5511 -4.2629 2.4910 18 7 1.9315 -4.9119 3.5698 19 14 0.5695 -5.1443 1.1684 20 1 1.4998 -5.7444 0.1788 21 1 -0.2494 -6.2152 1.7908 22 1 -0.3222 -4.1736 0.4844 23 1 -0.3634 0.3405 0.9696 24 1 -0.3634 0.6694 -0.7798 25 1 -0.3633 -1.0100 -0.1898 26 1 1.6013 1.9128 -0.8603 27 1 1.6933 1.8775 0.9171 28 1 3.8254 0.8480 -1.0105 29 1 3.9177 2.3448 -0.0512 30 1 5.8824 -0.0924 1.8490 31 1 5.8824 0.2119 0.0953 32 1 5.4866 2.4997 2.1011 33 1 6.3321 2.2186 -0.8730 34 1 5.3975 3.5725 -0.1020 35 1 7.3314 4.2682 1.2331 36 1 8.2840 3.4830 -0.1000 37 1 7.8938 2.2301 2.4726 38 1 8.0909 1.2726 0.9410 39 1 3.9177 -1.3469 1.9203 40 1 3.8254 -1.3114 0.1426 41 1 0.3534 -2.1551 1.0604 42 1 1.8217 -2.7008 0.2151 43 1 1.7021 -5.8480 3.6788 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260974766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:11 Heat of formation + Delta-G solvation = 5.650588 kcal Electronic energy + Delta-G solvation = -19540.502872 eV Core-core repulsion = 16813.133596 eV Total energy + Delta-G solvation = -2727.369276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.79406 -39.42685 -36.29982 -35.22336 -33.18364 -30.63656 -29.50474 -27.39666 -26.53722 -25.30036 -24.42124 -23.38705 -21.68687 -20.68393 -20.04429 -19.02978 -17.31522 -16.50418 -16.47324 -16.10914 -15.92402 -15.71556 -15.30562 -14.95825 -14.72206 -14.58559 -14.06809 -13.78050 -13.34109 -13.28625 -13.07402 -13.02616 -12.64032 -12.54840 -12.33093 -12.24398 -11.97402 -11.86780 -11.69488 -11.52254 -11.35382 -11.26907 -10.99487 -10.80137 -10.69875 -9.34278 -9.18679 -8.28314 -6.31501 1.35639 1.36400 1.48868 2.36076 2.92248 3.04386 3.08204 3.71918 3.82430 3.89983 3.97868 4.04622 4.14076 4.22552 4.32268 4.41452 4.49356 4.59589 4.63780 4.66828 4.71785 4.80596 4.85893 4.87632 4.89938 4.95590 4.99691 5.02616 5.09172 5.12142 5.12940 5.19461 5.25183 5.40536 5.45213 5.60253 5.66020 6.04565 6.06486 6.26184 6.27349 6.35742 6.74830 7.32221 8.88157 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026217 B = 0.005476 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.735569 B = 5111.827132 C = 5923.928209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.553 5.553 3 C 0.055 3.945 4 C 0.059 3.941 5 N -0.549 5.549 6 C 0.066 3.934 7 C -0.105 4.105 8 C -0.135 4.135 9 C -0.133 4.133 10 C -0.137 4.137 11 C 0.085 3.915 12 C 0.113 3.887 13 H 0.018 0.982 14 C 0.003 3.997 15 C -0.522 4.522 16 H 0.034 0.966 17 C 0.010 3.990 18 N -0.949 5.949 19 Si 0.946 3.054 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.249 1.249 23 H 0.018 0.982 24 H 0.091 0.909 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.030 0.970 28 H 0.033 0.967 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.034 0.966 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.017 0.983 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.103 16.945 -10.258 20.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.278 5.278 3 C -0.072 4.072 4 C -0.069 4.069 5 N -0.273 5.273 6 C -0.062 4.062 7 C -0.124 4.124 8 C -0.172 4.172 9 C -0.170 4.170 10 C -0.175 4.175 11 C -0.043 4.043 12 C 0.004 3.996 13 H 0.036 0.964 14 C -0.035 4.035 15 C -0.560 4.560 16 H 0.052 0.948 17 C -0.187 4.187 18 N -0.590 5.590 19 Si 0.770 3.230 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.173 1.173 23 H 0.037 0.963 24 H 0.109 0.891 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.035 0.965 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.097 16.796 -10.181 20.566 hybrid contribution -0.400 -1.150 0.224 1.238 sum 5.697 15.646 -9.957 19.401 Atomic orbital electron populations 1.22378 0.86845 1.02486 1.00407 1.62217 1.08612 1.14098 1.42832 1.22276 0.94963 0.88799 1.01198 1.22320 0.94180 0.99360 0.91033 1.62212 1.08229 1.13349 1.43531 1.22126 0.86363 0.98023 0.99659 1.22540 0.96413 0.94144 0.99286 1.23053 0.98353 0.99222 0.96581 1.22768 0.97776 0.97089 0.99393 1.22935 0.94921 0.98674 1.00922 1.21859 0.94177 0.88864 0.99436 1.21346 0.93927 0.94174 0.90135 0.96374 1.19513 0.96265 0.92409 0.95284 1.21305 1.34554 0.95710 1.04435 0.94785 1.25893 0.96722 0.98314 0.97770 1.70055 1.48535 1.10803 1.29575 0.85714 0.79492 0.78480 0.79307 1.19387 1.20896 1.17266 0.96294 0.89074 0.92191 0.88006 0.95134 0.94893 0.87775 0.92326 0.94815 0.89365 0.90385 0.90777 0.89543 0.90659 0.91305 0.90198 0.92418 0.95681 0.95850 0.96470 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 8.98 127.69 1.15 1.97 16 2 N -0.55 -19.20 4.78 -896.55 -4.29 -23.49 16 3 C 0.06 1.55 5.60 86.31 0.48 2.03 16 4 C 0.06 1.59 5.14 86.31 0.44 2.03 16 5 N -0.55 -18.00 4.71 -895.72 -4.22 -22.22 16 6 C 0.07 1.85 4.87 86.30 0.42 2.27 16 7 C -0.11 -2.28 3.45 -10.27 -0.04 -2.31 16 8 C -0.13 -2.32 5.93 31.12 0.18 -2.14 16 9 C -0.13 -1.99 8.08 31.12 0.25 -1.74 16 10 C -0.14 -2.48 7.64 31.12 0.24 -2.24 16 11 C 0.08 3.47 4.68 86.31 0.40 3.87 16 12 C 0.11 4.80 1.96 44.92 0.09 4.89 16 13 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 14 C 0.00 0.17 3.34 29.85 0.10 0.27 16 15 C -0.52 -30.50 8.93 25.60 0.23 -30.27 16 16 H 0.03 2.20 7.44 -2.91 -0.02 2.18 16 17 C 0.01 0.59 5.47 84.66 0.46 1.05 16 18 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 19 Si 0.95 45.14 27.41 68.60 1.88 47.02 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 22 H -0.25 -11.11 6.63 99.48 0.66 -10.45 16 23 H 0.02 0.59 8.11 -2.39 -0.02 0.57 16 24 H 0.09 2.16 8.01 -2.39 -0.02 2.14 16 25 H 0.06 2.00 6.54 -2.39 -0.02 1.98 16 26 H 0.10 2.22 8.06 -2.39 -0.02 2.20 16 27 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 2.28 5.15 -2.39 -0.01 2.27 16 30 H 0.06 1.81 8.03 -2.39 -0.02 1.79 16 31 H 0.03 0.92 7.82 -2.39 -0.02 0.90 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.08 1.37 7.90 -2.39 -0.02 1.35 16 34 H 0.07 1.17 7.25 -2.39 -0.02 1.15 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 1.44 8.10 -2.39 -0.02 1.42 16 39 H 0.06 2.69 7.02 -2.38 -0.02 2.68 16 40 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.02 1.12 5.50 -2.39 -0.01 1.11 16 42 H 0.02 0.84 7.40 -2.39 -0.02 0.82 16 43 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -65.87 321.57 -1.01 -66.88 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.90 Total: 11.89 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 4.41 Total: -20.31 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -8.21 Total: -105.48 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -65.87 -1.01 -66.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260974766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.532 kcal (2) G-P(sol) polarization free energy of solvation -65.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds