Wall clock time and date at job start Mon Mar 30 2020 03:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47957 * 110.99872 * 2 1 4 4 C 1.53937 * 86.17920 * 222.41747 * 3 2 1 5 5 C 1.52999 * 113.73200 * 138.07829 * 4 3 2 6 6 C 1.53007 * 109.47196 * 175.00206 * 5 4 3 7 7 N 1.46894 * 109.47345 * 180.02562 * 6 5 4 8 8 C 1.47481 * 111.00510 * 74.02678 * 7 6 5 9 9 C 1.53509 * 87.93350 * 138.70396 * 8 7 6 10 10 C 1.53001 * 114.17143 * 220.33010 * 9 8 7 11 11 C 1.53000 * 109.47178 * 268.84420 * 10 9 8 12 12 C 1.50700 * 109.47121 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99912 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00162 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99959 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00257 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47079 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47157 * 120.00422 * 16 14 12 19 19 H 1.48500 * 109.47430 * 240.00605 * 16 14 12 20 20 C 1.47474 * 111.00348 * 170.00050 * 7 6 5 21 21 C 1.47959 * 110.99905 * 260.64062 * 2 1 3 22 22 H 1.08998 * 109.47397 * 59.99827 * 1 2 3 23 23 H 1.09002 * 109.47461 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46963 * 299.99752 * 1 2 3 25 25 H 1.09000 * 113.75975 * 108.10133 * 3 2 1 26 26 H 1.08998 * 113.76273 * 336.73717 * 3 2 1 27 27 H 1.08998 * 113.73683 * 269.35977 * 4 3 2 28 28 H 1.08999 * 109.47630 * 294.99982 * 5 4 3 29 29 H 1.09001 * 109.47267 * 55.00353 * 5 4 3 30 30 H 1.08999 * 109.46649 * 300.00377 * 6 5 4 31 31 H 1.09001 * 109.46893 * 59.99918 * 6 5 4 32 32 H 1.08998 * 113.47560 * 253.47382 * 8 7 6 33 33 H 1.09005 * 113.47172 * 23.93262 * 8 7 6 34 34 H 1.08998 * 114.34395 * 87.63888 * 9 8 7 35 35 H 1.09009 * 109.47008 * 28.84208 * 10 9 8 36 36 H 1.08998 * 109.47564 * 148.83864 * 10 9 8 37 37 H 1.08996 * 109.46956 * 300.00145 * 11 10 9 38 38 H 1.08999 * 109.47408 * 60.00079 * 11 10 9 39 39 H 0.96999 * 120.00020 * 179.97438 * 15 14 12 40 40 H 1.09005 * 113.47340 * 336.06161 * 20 7 6 41 41 H 1.08995 * 113.47929 * 106.52711 * 20 7 6 42 42 H 1.09004 * 113.75954 * 23.26493 * 21 2 1 43 43 H 1.08999 * 113.75873 * 251.90469 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0211 0.8792 -1.0360 5 6 3.2610 1.8570 -2.1881 6 6 4.3768 1.3212 -3.0877 7 7 4.6076 2.2603 -4.1935 8 6 5.3163 3.4655 -3.7244 9 6 6.1587 3.4013 -5.0061 10 6 7.6401 3.7231 -4.7989 11 6 7.8701 5.2216 -5.0048 12 6 9.3291 5.5387 -4.8001 13 1 10.0229 4.7502 -4.5488 14 6 9.7783 6.8353 -4.9347 15 7 8.9334 7.7954 -5.2412 16 14 11.5868 7.2282 -4.6817 17 1 12.3222 5.9820 -4.3480 18 1 12.1452 7.8135 -5.9271 19 1 11.7311 8.2015 -3.5695 20 6 5.8261 1.9039 -4.9439 21 6 1.9992 -0.2246 -1.3629 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 2.4460 1.6802 0.9482 26 1 1.3010 2.1198 -0.3940 27 1 3.9451 0.5051 -0.5953 28 1 2.3456 1.9648 -2.7699 29 1 3.5526 2.8274 -1.7864 30 1 5.2922 1.2134 -2.5060 31 1 4.0851 0.3508 -3.4895 32 1 4.6800 4.3486 -3.6668 33 1 5.8954 3.3024 -2.8154 34 1 5.7206 3.9208 -5.8582 35 1 7.9339 3.4461 -3.7864 36 1 8.2378 3.1617 -5.5170 37 1 7.5762 5.4986 -6.0172 38 1 7.2725 5.7830 -4.2866 39 1 9.2493 8.7076 -5.3356 40 1 6.5413 1.3241 -4.3605 41 1 5.6219 1.4636 -5.9199 42 1 1.3010 0.0441 -2.1556 43 1 2.4459 -1.2089 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260977521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:00 Heat of formation + Delta-G solvation = 48.894590 kcal Electronic energy + Delta-G solvation = -18201.103729 eV Core-core repulsion = 15475.609653 eV Total energy + Delta-G solvation = -2725.494076 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.39968 -39.71602 -34.34722 -33.20418 -31.42019 -29.59493 -27.05548 -26.41298 -25.65453 -24.81515 -22.91908 -21.41341 -20.29421 -19.84301 -19.21833 -16.30325 -16.19541 -15.86054 -15.57881 -15.15774 -14.74131 -14.63771 -14.41370 -13.65767 -13.50703 -13.01363 -12.83169 -12.44795 -12.32298 -11.93524 -11.76411 -11.60677 -11.53126 -11.25296 -11.00460 -10.85244 -10.75164 -10.52602 -10.47559 -10.30830 -10.17719 -9.59374 -9.24793 -9.12106 -9.03932 -8.60103 -8.32683 -5.97960 -4.00178 3.31639 3.39147 3.43179 3.65251 4.06315 4.22879 4.47231 4.53391 4.76695 4.86419 4.94843 5.03411 5.10658 5.13921 5.17670 5.22325 5.31902 5.37789 5.42266 5.47328 5.52527 5.61815 5.66690 5.73840 5.79686 5.92816 5.96619 6.02052 6.11631 6.16661 6.23783 6.38440 6.46177 6.67739 6.71526 6.95855 7.12854 7.30842 7.71408 7.86776 8.03181 8.45616 9.07631 9.63850 11.13307 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041562 B = 0.003006 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.528925 B = 9311.184097 C = 9585.780166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.488 5.488 3 C 0.004 3.996 4 C -0.113 4.113 5 C -0.106 4.106 6 C 0.022 3.978 7 N -0.478 5.478 8 C 0.005 3.995 9 C -0.108 4.108 10 C -0.101 4.101 11 C 0.023 3.977 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.002 4.002 21 C 0.004 3.996 22 H 0.035 0.965 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.623 -14.651 7.452 22.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.210 5.210 3 C -0.125 4.125 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.107 4.107 7 N -0.200 5.200 8 C -0.124 4.124 9 C -0.127 4.127 10 C -0.139 4.139 11 C -0.014 4.014 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.131 4.131 21 C -0.124 4.124 22 H 0.053 0.947 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.117 0.883 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.173 -14.910 7.652 22.607 hybrid contribution 1.281 0.690 0.048 1.455 sum -13.893 -14.221 7.699 21.319 Atomic orbital electron populations 1.22861 0.89826 1.02298 1.01055 1.68458 1.08984 1.18860 1.24726 1.24008 0.97080 0.91271 1.00158 1.22983 0.98306 0.95978 0.95921 1.21517 0.99274 0.98507 0.95082 1.22623 0.97862 0.97132 0.93048 1.68902 1.29733 1.04774 1.16620 1.23888 0.95960 0.94680 0.97856 1.22839 0.97661 0.94227 0.97930 1.21606 0.91466 1.00839 0.99963 1.19075 0.96376 0.88929 0.97053 1.21322 0.94114 0.93261 1.47099 0.92764 1.25030 0.97532 0.96558 0.95408 1.69977 1.34148 1.00590 1.48797 0.86569 0.85561 0.78325 0.77744 1.19786 1.21031 1.21044 1.23911 0.91312 0.98456 0.99399 1.24101 0.97120 1.00335 0.90879 0.94681 0.91267 0.91443 0.89368 0.91106 0.88317 0.91258 0.91337 0.94149 0.91067 0.90189 0.91451 0.88536 0.93471 0.93024 0.96614 0.96598 0.93102 0.91678 0.90398 0.91042 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.64 60.07 0.58 0.49 16 2 N -0.49 -4.58 6.56 -246.61 -1.62 -6.20 16 3 C 0.00 0.03 7.55 -2.77 -0.02 0.01 16 4 C -0.11 -1.01 3.83 -89.69 -0.34 -1.35 16 5 C -0.11 -1.07 5.17 -26.73 -0.14 -1.21 16 6 C 0.02 0.26 4.81 -3.82 -0.02 0.24 16 7 N -0.48 -6.71 6.41 -244.66 -1.57 -8.28 16 8 C 0.00 0.07 6.57 -7.55 -0.05 0.02 16 9 C -0.11 -1.83 3.99 -90.09 -0.36 -2.19 16 10 C -0.10 -2.04 5.06 -26.73 -0.14 -2.17 16 11 C 0.02 0.58 4.96 -27.88 -0.14 0.45 16 12 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 16 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C 0.00 -0.03 7.29 -7.56 -0.06 -0.08 16 21 C 0.00 0.04 7.52 -2.77 -0.02 0.02 16 22 H 0.03 0.26 7.62 -51.93 -0.40 -0.14 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.59 7.88 -51.93 -0.41 0.18 16 27 H 0.10 0.91 8.13 -51.93 -0.42 0.49 16 28 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 29 H 0.07 0.75 7.67 -51.93 -0.40 0.35 16 30 H 0.04 0.47 7.56 -51.93 -0.39 0.08 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.03 7.43 -51.93 -0.39 0.65 16 34 H 0.10 1.71 8.12 -51.93 -0.42 1.29 16 35 H 0.05 0.94 7.81 -51.92 -0.41 0.53 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.06 0.89 7.73 -51.93 -0.40 0.49 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.59 7.37 -51.93 -0.38 0.21 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -29.99 340.72 -11.64 -41.63 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -8.19 Total: -3.30 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -1.11 Total: -19.35 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -2.45 Total: -40.82 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.99 -11.64 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260977521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.525 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds