Wall clock time and date at job start Mon Mar 30 2020 03:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47957 * 110.99872 * 2 1 4 4 C 1.53937 * 86.17920 * 222.41747 * 3 2 1 5 5 C 1.52999 * 113.73200 * 138.07829 * 4 3 2 6 6 C 1.53007 * 109.47196 * 175.00206 * 5 4 3 7 7 N 1.46894 * 109.47345 * 180.02562 * 6 5 4 8 8 C 1.47481 * 111.00510 * 74.02678 * 7 6 5 9 9 C 1.53509 * 87.93350 * 138.70396 * 8 7 6 10 10 C 1.53001 * 114.17143 * 220.33010 * 9 8 7 11 11 C 1.53000 * 109.47178 * 268.84420 * 10 9 8 12 12 C 1.50700 * 109.47121 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99912 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00162 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99959 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00257 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47079 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47157 * 120.00422 * 16 14 12 19 19 H 1.48500 * 109.47430 * 240.00605 * 16 14 12 20 20 C 1.47474 * 111.00348 * 170.00050 * 7 6 5 21 21 C 1.47959 * 110.99905 * 260.64062 * 2 1 3 22 22 H 1.08998 * 109.47397 * 59.99827 * 1 2 3 23 23 H 1.09002 * 109.47461 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46963 * 299.99752 * 1 2 3 25 25 H 1.09000 * 113.75975 * 108.10133 * 3 2 1 26 26 H 1.08998 * 113.76273 * 336.73717 * 3 2 1 27 27 H 1.08998 * 113.73683 * 269.35977 * 4 3 2 28 28 H 1.08999 * 109.47630 * 294.99982 * 5 4 3 29 29 H 1.09001 * 109.47267 * 55.00353 * 5 4 3 30 30 H 1.08999 * 109.46649 * 300.00377 * 6 5 4 31 31 H 1.09001 * 109.46893 * 59.99918 * 6 5 4 32 32 H 1.08998 * 113.47560 * 253.47382 * 8 7 6 33 33 H 1.09005 * 113.47172 * 23.93262 * 8 7 6 34 34 H 1.08998 * 114.34395 * 87.63888 * 9 8 7 35 35 H 1.09009 * 109.47008 * 28.84208 * 10 9 8 36 36 H 1.08998 * 109.47564 * 148.83864 * 10 9 8 37 37 H 1.08996 * 109.46956 * 300.00145 * 11 10 9 38 38 H 1.08999 * 109.47408 * 60.00079 * 11 10 9 39 39 H 0.96999 * 120.00020 * 179.97438 * 15 14 12 40 40 H 1.09005 * 113.47340 * 336.06161 * 20 7 6 41 41 H 1.08995 * 113.47929 * 106.52711 * 20 7 6 42 42 H 1.09004 * 113.75954 * 23.26493 * 21 2 1 43 43 H 1.08999 * 113.75873 * 251.90469 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0211 0.8792 -1.0360 5 6 3.2610 1.8570 -2.1881 6 6 4.3768 1.3212 -3.0877 7 7 4.6076 2.2603 -4.1935 8 6 5.3163 3.4655 -3.7244 9 6 6.1587 3.4013 -5.0061 10 6 7.6401 3.7231 -4.7989 11 6 7.8701 5.2216 -5.0048 12 6 9.3291 5.5387 -4.8001 13 1 10.0229 4.7502 -4.5488 14 6 9.7783 6.8353 -4.9347 15 7 8.9334 7.7954 -5.2412 16 14 11.5868 7.2282 -4.6817 17 1 12.3222 5.9820 -4.3480 18 1 12.1452 7.8135 -5.9271 19 1 11.7311 8.2015 -3.5695 20 6 5.8261 1.9039 -4.9439 21 6 1.9992 -0.2246 -1.3629 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 2.4460 1.6802 0.9482 26 1 1.3010 2.1198 -0.3940 27 1 3.9451 0.5051 -0.5953 28 1 2.3456 1.9648 -2.7699 29 1 3.5526 2.8274 -1.7864 30 1 5.2922 1.2134 -2.5060 31 1 4.0851 0.3508 -3.4895 32 1 4.6800 4.3486 -3.6668 33 1 5.8954 3.3024 -2.8154 34 1 5.7206 3.9208 -5.8582 35 1 7.9339 3.4461 -3.7864 36 1 8.2378 3.1617 -5.5170 37 1 7.5762 5.4986 -6.0172 38 1 7.2725 5.7830 -4.2866 39 1 9.2493 8.7076 -5.3356 40 1 6.5413 1.3241 -4.3605 41 1 5.6219 1.4636 -5.9199 42 1 1.3010 0.0441 -2.1556 43 1 2.4459 -1.2089 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260977521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:59 Heat of formation + Delta-G solvation = 28.008554 kcal Electronic energy + Delta-G solvation = -18202.009416 eV Core-core repulsion = 15475.609653 eV Total energy + Delta-G solvation = -2726.399762 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.33309 -40.67729 -35.95983 -34.63681 -33.02122 -30.67967 -28.43797 -27.10970 -26.85035 -26.30215 -24.10952 -22.67347 -21.64874 -20.66934 -20.45569 -18.42120 -16.92852 -16.88220 -16.65232 -16.40769 -15.97910 -15.89566 -15.58595 -14.75644 -14.64421 -14.30914 -14.02051 -13.65588 -13.51733 -13.43887 -12.95828 -12.95408 -12.64148 -12.46464 -12.33902 -12.17364 -12.04072 -11.95411 -11.76185 -11.48225 -11.29079 -11.27112 -11.01492 -10.85180 -10.53558 -9.80519 -9.78855 -8.18618 -6.29731 1.40224 1.40403 1.53724 2.41618 2.97484 3.08278 3.14310 3.44428 3.59420 3.76603 3.87321 4.10050 4.19391 4.22312 4.35763 4.37015 4.49353 4.51931 4.56003 4.58984 4.64572 4.74567 4.75095 4.79313 4.81709 4.83030 4.89932 4.94855 5.01399 5.03167 5.09154 5.30714 5.34571 5.39175 5.41308 5.42411 5.55841 5.79623 5.88324 6.06717 6.18109 6.27727 6.88486 7.39608 8.93241 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041562 B = 0.003006 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.528925 B = 9311.184097 C = 9585.780166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.505 5.505 3 C 0.004 3.996 4 C -0.107 4.107 5 C -0.097 4.097 6 C 0.023 3.977 7 N -0.481 5.481 8 C 0.009 3.991 9 C -0.116 4.116 10 C -0.086 4.086 11 C 0.027 3.973 12 C -0.542 4.542 13 H 0.059 0.941 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.964 3.036 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.278 1.278 20 C 0.011 3.989 21 C 0.007 3.993 22 H 0.038 0.962 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.054 0.946 37 H -0.012 1.012 38 H -0.009 1.009 39 H 0.263 0.737 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.289 -16.094 8.034 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.228 5.228 3 C -0.125 4.125 4 C -0.127 4.127 5 C -0.135 4.135 6 C -0.106 4.106 7 N -0.203 5.203 8 C -0.120 4.120 9 C -0.135 4.135 10 C -0.124 4.124 11 C -0.010 4.010 12 C -0.580 4.580 13 H 0.078 0.922 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.788 3.212 17 H -0.185 1.185 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.118 4.118 21 C -0.121 4.121 22 H 0.057 0.943 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.007 0.993 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.846 -16.372 8.236 23.586 hybrid contribution 1.129 1.146 -0.135 1.614 sum -13.718 -15.227 8.101 22.038 Atomic orbital electron populations 1.22888 0.88961 1.02767 1.01464 1.68452 1.10022 1.19094 1.25191 1.24022 0.97057 0.91285 1.00138 1.22903 0.98420 0.95869 0.95482 1.21422 0.98632 0.98289 0.95163 1.22684 0.98373 0.97049 0.92468 1.68887 1.29279 1.04672 1.17500 1.23808 0.95702 0.95381 0.97108 1.22718 0.95450 0.96860 0.98479 1.21381 0.94029 0.96729 1.00220 1.18976 0.94965 0.92525 0.94574 1.21775 0.95422 0.93748 1.47033 0.92246 1.25995 1.02636 0.96441 0.94945 1.70110 1.36569 1.01110 1.49701 0.85416 0.79440 0.78456 0.77844 1.18543 1.20416 1.20387 1.23836 0.91482 0.96096 1.00353 1.24107 0.96929 1.00329 0.90759 0.94289 0.90792 0.91035 0.89308 0.90736 0.88452 0.91454 0.92325 0.93999 0.89754 0.90970 0.91214 0.89828 0.92991 0.92717 0.99342 0.99069 0.92832 0.90521 0.89148 0.90628 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.17 9.64 127.69 1.23 1.07 16 2 N -0.51 -8.71 6.56 -934.14 -6.12 -14.83 16 3 C 0.00 0.06 7.55 86.41 0.65 0.71 16 4 C -0.11 -1.76 3.83 -10.15 -0.04 -1.80 16 5 C -0.10 -1.82 5.17 30.60 0.16 -1.66 16 6 C 0.02 0.48 4.81 86.31 0.42 0.89 16 7 N -0.48 -12.73 6.41 -927.95 -5.95 -18.68 16 8 C 0.01 0.27 6.57 83.57 0.55 0.82 16 9 C -0.12 -3.91 3.99 -10.45 -0.04 -3.95 16 10 C -0.09 -3.46 5.06 30.59 0.15 -3.31 16 11 C 0.03 1.41 4.96 29.85 0.15 1.56 16 12 C -0.54 -31.07 9.11 25.60 0.23 -30.84 16 13 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 14 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 15 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 16 Si 0.96 44.52 29.54 68.60 2.03 46.54 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 C 0.01 0.29 7.29 83.57 0.61 0.90 16 21 C 0.01 0.11 7.52 86.40 0.65 0.76 16 22 H 0.04 0.51 7.62 -2.39 -0.02 0.49 16 23 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 24 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.14 7.88 -2.39 -0.02 1.12 16 27 H 0.10 1.64 8.13 -2.39 -0.02 1.62 16 28 H 0.07 1.30 7.84 -2.39 -0.02 1.28 16 29 H 0.06 1.22 7.67 -2.39 -0.02 1.21 16 30 H 0.04 0.89 7.56 -2.39 -0.02 0.87 16 31 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 2.08 7.43 -2.38 -0.02 2.06 16 34 H 0.08 3.03 8.12 -2.39 -0.02 3.01 16 35 H 0.05 2.03 7.81 -2.38 -0.02 2.01 16 36 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 37 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 38 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.08 1.88 7.73 -2.38 -0.02 1.86 16 41 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.08 1.10 7.37 -2.38 -0.02 1.09 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -63.83 340.72 -3.65 -67.48 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.93 Total: 11.25 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 5.18 Total: -34.54 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -11.79 Total: -90.73 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -63.83 -3.65 -67.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260977521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.486 kcal (2) G-P(sol) polarization free energy of solvation -63.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds