Wall clock time and date at job start Mon Mar 30 2020 03:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47475 * 110.99695 * 2 1 4 4 C 1.53521 * 87.93048 * 221.29471 * 3 2 1 5 5 C 1.53001 * 114.34092 * 139.68275 * 4 3 2 6 6 N 1.46902 * 109.46866 * 91.08151 * 5 4 3 7 7 C 1.47895 * 111.00476 * 69.86823 * 6 5 4 8 8 C 1.53992 * 107.05951 * 214.15591 * 7 6 5 9 9 C 1.54587 * 105.14059 * 1.22570 * 8 7 6 10 10 H 1.09004 * 110.72115 * 263.59988 * 9 8 7 11 11 C 1.53003 * 110.72537 * 140.49498 * 9 8 7 12 12 C 1.53000 * 109.47146 * 66.45097 * 11 9 8 13 13 C 1.50692 * 109.47084 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00462 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00228 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99774 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00285 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47183 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46999 * 119.99709 * 17 15 13 20 20 H 1.48504 * 109.47337 * 239.99717 * 17 15 13 21 21 C 1.48531 * 110.99971 * 312.47069 * 6 5 4 22 22 C 1.47472 * 111.00187 * 264.02519 * 2 1 3 23 23 H 1.09001 * 109.46544 * 155.97377 * 1 2 3 24 24 H 1.09001 * 109.47272 * 275.96984 * 1 2 3 25 25 H 1.09000 * 109.47033 * 35.97433 * 1 2 3 26 26 H 1.09003 * 113.47854 * 336.05764 * 3 2 1 27 27 H 1.08998 * 113.48126 * 106.52852 * 3 2 1 28 28 H 1.08998 * 114.16825 * 272.37696 * 4 3 2 29 29 H 1.08997 * 109.46764 * 211.07651 * 5 4 3 30 30 H 1.08992 * 109.47306 * 331.07846 * 5 4 3 31 31 H 1.09005 * 109.91832 * 333.51141 * 7 6 5 32 32 H 1.09001 * 109.91548 * 94.60077 * 7 6 5 33 33 H 1.08998 * 110.30925 * 120.14808 * 8 7 6 34 34 H 1.09008 * 110.30893 * 242.30827 * 8 7 6 35 35 H 1.08999 * 109.46827 * 186.45600 * 11 9 8 36 36 H 1.08998 * 109.46638 * 306.45356 * 11 9 8 37 37 H 1.08997 * 109.47027 * 300.00369 * 12 11 9 38 38 H 1.09010 * 109.46889 * 60.00237 * 12 11 9 39 39 H 0.96999 * 119.99717 * 179.97438 * 16 15 13 40 40 H 1.08999 * 110.66913 * 278.16028 * 21 6 5 41 41 H 1.09004 * 110.66719 * 41.28667 * 21 6 5 42 42 H 1.08998 * 113.48140 * 253.47102 * 22 2 1 43 43 H 1.09005 * 113.47238 * 23.87909 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9975 1.3768 0.0000 4 6 3.0538 0.9120 -1.0125 5 6 3.3395 1.9157 -2.1314 6 7 4.4425 2.7980 -1.7277 7 6 5.7243 2.0612 -1.6904 8 6 6.5556 2.6589 -0.5402 9 6 5.6555 3.7496 0.0842 10 1 5.9011 4.7311 -0.3216 11 6 5.7825 3.7491 1.6089 12 6 7.1961 4.1818 2.0031 13 6 7.3214 4.1806 3.5048 14 1 6.4771 3.8998 4.1170 15 6 8.5135 4.5391 4.0975 16 7 9.5415 4.8816 3.3521 17 14 8.6686 4.5384 5.9590 18 1 7.3791 4.1169 6.5629 19 1 9.7380 3.5920 6.3662 20 1 9.0121 5.9050 6.4277 21 6 4.2332 3.3164 -0.3516 22 6 1.9976 -0.1433 -1.3693 23 1 -0.3632 -0.9387 -0.4184 24 1 -0.3634 0.1069 1.0221 25 1 -0.3633 0.8317 -0.6037 26 1 1.3000 2.1097 -0.4057 27 1 2.4186 1.6804 0.9584 28 1 3.9572 0.5039 -0.5593 29 1 3.6169 1.3791 -3.0386 30 1 2.4474 2.5126 -2.3206 31 1 5.5392 1.0033 -1.5040 32 1 6.2512 2.1846 -2.6365 33 1 6.7871 1.8910 0.1980 34 1 7.4735 3.1016 -0.9271 35 1 5.0580 4.4436 2.0340 36 1 5.5904 2.7457 1.9890 37 1 7.9205 3.4872 1.5779 38 1 7.3882 5.1852 1.6229 39 1 10.3801 5.1342 3.7691 40 1 3.5568 4.1710 -0.3612 41 1 3.8532 2.5310 0.3017 42 1 2.4188 -1.1281 -1.5714 43 1 1.2997 0.1829 -2.1404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260978576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:51 Heat of formation + Delta-G solvation = 29.236515 kcal Electronic energy + Delta-G solvation = -19095.279699 eV Core-core repulsion = 16368.933185 eV Total energy + Delta-G solvation = -2726.346514 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.75321 -38.49914 -34.48602 -32.65582 -31.09417 -29.35745 -28.45362 -26.35588 -25.91350 -24.36058 -22.79458 -21.32345 -20.43367 -19.72475 -19.17179 -16.55961 -16.17826 -15.96415 -15.30048 -15.20072 -14.71859 -14.40174 -13.98759 -13.50459 -13.12299 -12.99934 -12.73305 -12.50356 -12.30873 -11.80470 -11.64129 -11.44873 -11.37406 -11.13663 -10.95021 -10.91188 -10.82989 -10.54883 -10.44608 -10.36337 -9.92649 -9.59514 -9.19959 -9.17319 -8.95212 -8.30531 -8.19518 -5.95754 -3.97571 3.33296 3.40761 3.45089 3.79664 4.03657 4.34366 4.49760 4.50049 4.80951 4.97401 5.00910 5.10359 5.15720 5.19611 5.25370 5.39571 5.40398 5.42632 5.49738 5.53524 5.58417 5.67014 5.68642 5.87412 5.93129 6.04676 6.10288 6.16771 6.22965 6.40600 6.50106 6.54807 6.79422 6.81773 6.94398 7.08844 7.15894 7.25839 7.74387 7.90266 8.05855 8.48741 9.10303 9.66292 11.15539 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026418 B = 0.004352 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.640586 B = 6432.370486 C = 7181.115553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.479 5.479 3 C 0.003 3.997 4 C -0.150 4.150 5 C 0.057 3.943 6 N -0.516 5.516 7 C 0.033 3.967 8 C -0.123 4.123 9 C -0.088 4.088 10 H 0.074 0.926 11 C -0.101 4.101 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.028 3.972 22 C 0.003 3.997 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.017 0.983 38 H 0.014 0.986 39 H 0.259 0.741 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.188 -8.130 -11.790 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.201 5.201 3 C -0.126 4.126 4 C -0.171 4.171 5 C -0.072 4.072 6 N -0.238 5.238 7 C -0.095 4.095 8 C -0.161 4.161 9 C -0.107 4.107 10 H 0.093 0.907 11 C -0.139 4.139 12 C -0.015 4.015 13 C -0.557 4.557 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.099 4.099 22 C -0.126 4.126 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.123 0.877 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.036 0.964 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.101 0.899 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.857 -8.138 -11.635 20.551 hybrid contribution -0.281 -0.136 1.019 1.066 sum -15.139 -8.274 -10.617 20.257 Atomic orbital electron populations 1.22891 0.89777 1.01121 1.02343 1.68919 1.09111 1.19706 1.22330 1.24134 0.96640 0.91055 1.00737 1.23441 0.98201 0.97349 0.98064 1.22315 0.95419 0.92874 0.96635 1.64918 1.01678 1.32007 1.25198 1.22911 0.90818 0.96106 0.99626 1.22426 0.98560 0.98625 0.96459 1.22161 0.92486 0.98613 0.97402 0.90706 1.21638 1.01004 1.00154 0.91133 1.19093 0.90107 0.96494 0.95786 1.21333 0.97202 1.44886 0.92305 0.92784 1.25020 0.96003 0.95485 0.97970 1.69980 1.02419 1.46306 1.34834 0.86582 0.78025 0.77586 0.86088 1.19780 1.21065 1.21049 1.23572 0.98577 0.99436 0.88349 1.23810 0.96920 1.00322 0.91573 0.91484 0.91036 0.94665 0.91158 0.89178 0.87673 0.90697 0.90789 0.93911 0.90938 0.91183 0.91168 0.93407 0.93540 0.96424 0.96761 0.93148 0.90852 0.92295 0.89907 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.69 60.07 0.58 0.48 16 2 N -0.48 -5.25 6.73 -252.99 -1.70 -6.95 16 3 C 0.00 0.03 5.89 -7.55 -0.04 -0.01 16 4 C -0.15 -1.58 2.70 -90.08 -0.24 -1.82 16 5 C 0.06 0.59 5.42 -3.82 -0.02 0.57 16 6 N -0.52 -6.78 5.54 -230.46 -1.28 -8.05 16 7 C 0.03 0.44 6.38 -2.76 -0.02 0.42 16 8 C -0.12 -1.98 5.65 -25.38 -0.14 -2.12 16 9 C -0.09 -1.50 3.08 -88.76 -0.27 -1.77 16 10 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 11 C -0.10 -2.08 4.57 -26.73 -0.12 -2.20 16 12 C 0.02 0.58 4.82 -27.89 -0.13 0.44 16 13 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 17 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.03 0.40 5.42 -1.90 -0.01 0.39 16 22 C 0.00 0.03 7.30 -7.55 -0.06 -0.02 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.03 0.28 7.52 -51.93 -0.39 -0.11 16 26 H 0.07 0.69 7.29 -51.93 -0.38 0.31 16 27 H 0.09 1.09 6.98 -51.93 -0.36 0.73 16 28 H 0.11 1.29 6.61 -51.93 -0.34 0.95 16 29 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 30 H 0.07 0.73 7.82 -51.93 -0.41 0.32 16 31 H 0.04 0.53 6.29 -51.93 -0.33 0.21 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.20 7.80 -51.93 -0.41 0.79 16 34 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 37 H 0.02 0.48 7.50 -51.93 -0.39 0.09 16 38 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.82 4.10 -51.93 -0.21 0.61 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -30.25 327.16 -11.03 -41.29 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -7.81 Total: -2.33 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -0.89 Total: -19.31 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: -2.24 Total: -41.47 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.25 -11.03 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260978576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.524 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds