Wall clock time and date at job start Mon Mar 30 2020 03:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47475 * 110.99695 * 2 1 4 4 C 1.53521 * 87.93048 * 221.29471 * 3 2 1 5 5 C 1.53001 * 114.34092 * 139.68275 * 4 3 2 6 6 N 1.46902 * 109.46866 * 91.08151 * 5 4 3 7 7 C 1.47895 * 111.00476 * 69.86823 * 6 5 4 8 8 C 1.53992 * 107.05951 * 214.15591 * 7 6 5 9 9 C 1.54587 * 105.14059 * 1.22570 * 8 7 6 10 10 H 1.09004 * 110.72115 * 263.59988 * 9 8 7 11 11 C 1.53003 * 110.72537 * 140.49498 * 9 8 7 12 12 C 1.53000 * 109.47146 * 66.45097 * 11 9 8 13 13 C 1.50692 * 109.47084 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00462 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00228 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99774 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00285 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47183 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46999 * 119.99709 * 17 15 13 20 20 H 1.48504 * 109.47337 * 239.99717 * 17 15 13 21 21 C 1.48531 * 110.99971 * 312.47069 * 6 5 4 22 22 C 1.47472 * 111.00187 * 264.02519 * 2 1 3 23 23 H 1.09001 * 109.46544 * 155.97377 * 1 2 3 24 24 H 1.09001 * 109.47272 * 275.96984 * 1 2 3 25 25 H 1.09000 * 109.47033 * 35.97433 * 1 2 3 26 26 H 1.09003 * 113.47854 * 336.05764 * 3 2 1 27 27 H 1.08998 * 113.48126 * 106.52852 * 3 2 1 28 28 H 1.08998 * 114.16825 * 272.37696 * 4 3 2 29 29 H 1.08997 * 109.46764 * 211.07651 * 5 4 3 30 30 H 1.08992 * 109.47306 * 331.07846 * 5 4 3 31 31 H 1.09005 * 109.91832 * 333.51141 * 7 6 5 32 32 H 1.09001 * 109.91548 * 94.60077 * 7 6 5 33 33 H 1.08998 * 110.30925 * 120.14808 * 8 7 6 34 34 H 1.09008 * 110.30893 * 242.30827 * 8 7 6 35 35 H 1.08999 * 109.46827 * 186.45600 * 11 9 8 36 36 H 1.08998 * 109.46638 * 306.45356 * 11 9 8 37 37 H 1.08997 * 109.47027 * 300.00369 * 12 11 9 38 38 H 1.09010 * 109.46889 * 60.00237 * 12 11 9 39 39 H 0.96999 * 119.99717 * 179.97438 * 16 15 13 40 40 H 1.08999 * 110.66913 * 278.16028 * 21 6 5 41 41 H 1.09004 * 110.66719 * 41.28667 * 21 6 5 42 42 H 1.08998 * 113.48140 * 253.47102 * 22 2 1 43 43 H 1.09005 * 113.47238 * 23.87909 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9975 1.3768 0.0000 4 6 3.0538 0.9120 -1.0125 5 6 3.3395 1.9157 -2.1314 6 7 4.4425 2.7980 -1.7277 7 6 5.7243 2.0612 -1.6904 8 6 6.5556 2.6589 -0.5402 9 6 5.6555 3.7496 0.0842 10 1 5.9011 4.7311 -0.3216 11 6 5.7825 3.7491 1.6089 12 6 7.1961 4.1818 2.0031 13 6 7.3214 4.1806 3.5048 14 1 6.4771 3.8998 4.1170 15 6 8.5135 4.5391 4.0975 16 7 9.5415 4.8816 3.3521 17 14 8.6686 4.5384 5.9590 18 1 7.3791 4.1169 6.5629 19 1 9.7380 3.5920 6.3662 20 1 9.0121 5.9050 6.4277 21 6 4.2332 3.3164 -0.3516 22 6 1.9976 -0.1433 -1.3693 23 1 -0.3632 -0.9387 -0.4184 24 1 -0.3634 0.1069 1.0221 25 1 -0.3633 0.8317 -0.6037 26 1 1.3000 2.1097 -0.4057 27 1 2.4186 1.6804 0.9584 28 1 3.9572 0.5039 -0.5593 29 1 3.6169 1.3791 -3.0386 30 1 2.4474 2.5126 -2.3206 31 1 5.5392 1.0033 -1.5040 32 1 6.2512 2.1846 -2.6365 33 1 6.7871 1.8910 0.1980 34 1 7.4735 3.1016 -0.9271 35 1 5.0580 4.4436 2.0340 36 1 5.5904 2.7457 1.9890 37 1 7.9205 3.4872 1.5779 38 1 7.3882 5.1852 1.6229 39 1 10.3801 5.1342 3.7691 40 1 3.5568 4.1710 -0.3612 41 1 3.8532 2.5310 0.3017 42 1 2.4188 -1.1281 -1.5714 43 1 1.2997 0.1829 -2.1404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260978576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:51 Heat of formation + Delta-G solvation = 7.807669 kcal Electronic energy + Delta-G solvation = -19096.208924 eV Core-core repulsion = 16368.933185 eV Total energy + Delta-G solvation = -2727.275738 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.60976 -39.61884 -36.14452 -34.43469 -32.38614 -30.52623 -29.87460 -27.53501 -26.78434 -25.94580 -23.79322 -23.08383 -21.44571 -20.74656 -20.51468 -18.46450 -17.39207 -17.01465 -16.53134 -16.18642 -16.17800 -15.62526 -15.07501 -14.82022 -14.43666 -14.21175 -14.03458 -13.68885 -13.50916 -13.25403 -13.02857 -12.85237 -12.58316 -12.50992 -12.32047 -12.19129 -12.14513 -12.01879 -11.72837 -11.48871 -11.34597 -11.27999 -11.12858 -10.88816 -10.54077 -9.94501 -9.21074 -8.19129 -6.29999 1.39222 1.39313 1.52800 2.41054 2.99550 3.13716 3.15547 3.46090 3.69171 3.82487 3.86281 4.06770 4.13223 4.26838 4.36041 4.40258 4.46535 4.51487 4.57706 4.66360 4.68914 4.71589 4.75406 4.80633 4.90204 4.90475 4.94362 4.96848 5.02503 5.18222 5.24071 5.30758 5.32133 5.35178 5.42416 5.55119 5.80998 5.88432 5.96430 6.08216 6.18968 6.28217 6.87870 7.39124 8.92738 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026418 B = 0.004352 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.640586 B = 6432.370486 C = 7181.115553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.505 5.505 3 C 0.003 3.997 4 C -0.147 4.147 5 C 0.061 3.939 6 N -0.521 5.521 7 C 0.042 3.958 8 C -0.124 4.124 9 C -0.088 4.088 10 H 0.063 0.937 11 C -0.087 4.087 12 C 0.028 3.972 13 C -0.543 4.543 14 H 0.057 0.943 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.963 3.037 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.277 1.277 21 C 0.040 3.960 22 C 0.013 3.987 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.046 0.954 37 H -0.005 1.005 38 H -0.014 1.014 39 H 0.263 0.737 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.939 -8.854 -12.178 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.228 5.228 3 C -0.126 4.126 4 C -0.167 4.167 5 C -0.068 4.068 6 N -0.244 5.244 7 C -0.086 4.086 8 C -0.162 4.162 9 C -0.107 4.107 10 H 0.081 0.919 11 C -0.125 4.125 12 C -0.009 4.009 13 C -0.581 4.581 14 H 0.075 0.925 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.787 3.213 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.087 4.087 22 C -0.117 4.117 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.014 0.986 38 H 0.005 0.995 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.625 -8.870 -12.033 22.357 hybrid contribution 0.279 0.085 1.128 1.166 sum -16.346 -8.785 -10.904 21.524 Atomic orbital electron populations 1.22915 0.88577 1.02110 1.02500 1.68889 1.10555 1.19694 1.23623 1.24117 0.97033 0.91512 0.99899 1.23304 0.97632 0.97855 0.97957 1.22385 0.94826 0.92644 0.96937 1.64922 1.02386 1.33003 1.24061 1.22833 0.90624 0.96464 0.98656 1.22381 0.98569 0.97960 0.97297 1.22042 0.95281 0.98552 0.94835 0.91889 1.21413 0.97446 0.99792 0.93832 1.18978 0.92899 0.94376 0.94673 1.21773 0.97596 1.45042 0.93722 0.92468 1.25967 0.95562 0.94845 1.03434 1.70109 1.03058 1.47003 1.37184 0.85433 0.78424 0.77901 0.79507 1.18690 1.20342 1.20280 1.23409 0.96209 0.99888 0.89208 1.23801 0.96507 1.00032 0.91312 0.90539 0.91417 0.93538 0.89857 0.91131 0.89666 0.89155 0.89469 0.92766 0.89790 0.92667 0.92400 0.93189 0.93499 0.98648 0.99542 0.92827 0.90002 0.91936 0.89708 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.19 9.69 127.69 1.24 1.05 16 2 N -0.51 -10.16 6.73 -954.32 -6.42 -16.59 16 3 C 0.00 0.06 5.89 83.58 0.49 0.55 16 4 C -0.15 -2.79 2.70 -10.45 -0.03 -2.81 16 5 C 0.06 1.09 5.42 86.30 0.47 1.56 16 6 N -0.52 -12.66 5.54 -883.04 -4.89 -17.54 16 7 C 0.04 1.06 6.38 86.45 0.55 1.62 16 8 C -0.12 -4.07 5.65 31.47 0.18 -3.89 16 9 C -0.09 -3.05 3.08 -9.59 -0.03 -3.08 16 10 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 11 C -0.09 -3.65 4.57 30.60 0.14 -3.51 16 12 C 0.03 1.50 4.82 29.85 0.14 1.65 16 13 C -0.54 -31.74 9.11 25.60 0.23 -31.51 16 14 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 15 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 16 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 17 Si 0.96 45.14 29.54 68.60 2.03 47.16 16 18 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 21 C 0.04 1.10 5.42 86.65 0.47 1.57 16 22 C 0.01 0.20 7.30 83.57 0.61 0.81 16 23 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.05 0.61 7.52 -2.39 -0.02 0.59 16 26 H 0.08 1.42 7.29 -2.39 -0.02 1.40 16 27 H 0.07 1.67 6.98 -2.39 -0.02 1.65 16 28 H 0.09 1.99 6.61 -2.39 -0.02 1.97 16 29 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 30 H 0.09 1.39 7.82 -2.39 -0.02 1.37 16 31 H 0.05 1.26 6.29 -2.38 -0.02 1.25 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 1.95 7.80 -2.39 -0.02 1.93 16 34 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.05 1.94 8.07 -2.39 -0.02 1.92 16 37 H 0.00 -0.28 7.50 -2.39 -0.02 -0.30 16 38 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 39 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.06 1.68 4.10 -2.39 -0.01 1.67 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.09 1.08 7.87 -2.38 -0.02 1.06 16 Total: -1.00 -65.48 327.16 -3.12 -68.60 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.95 Total: 11.51 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 4.93 Total: -35.58 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -11.03 Total: -91.70 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -65.48 -3.12 -68.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260978576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.412 kcal (2) G-P(sol) polarization free energy of solvation -65.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds