Wall clock time and date at job start Mon Mar 30 2020 03:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47957 * 111.00052 * 2 1 4 4 C 1.53938 * 86.17806 * 222.41598 * 3 2 1 5 5 C 1.53008 * 113.73390 * 138.08043 * 4 3 2 6 6 N 1.46896 * 109.46932 * 172.58426 * 5 4 3 7 7 C 1.44276 * 110.99692 * 53.41395 * 6 5 4 8 8 C 1.54070 * 111.98172 * 219.30403 * 7 6 5 9 9 C 1.54290 * 112.29028 * 318.91508 * 8 7 6 10 10 C 1.50459 * 113.02972 * 318.30095 * 9 8 7 11 11 C 1.54508 * 108.84730 * 92.15920 * 10 9 8 12 12 C 1.45863 * 111.59867 * 282.79844 * 11 10 9 13 13 H 1.08999 * 108.79174 * 300.54496 * 12 11 10 14 14 C 1.50704 * 108.79438 * 182.20845 * 12 11 10 15 15 H 1.07998 * 119.99495 * 245.73118 * 14 12 11 16 16 C 1.37875 * 120.00058 * 65.72605 * 14 12 11 17 17 N 1.31512 * 119.99875 * 180.02562 * 16 14 12 18 18 Si 1.86801 * 120.00161 * 0.02562 * 16 14 12 19 19 H 1.48497 * 109.47088 * 269.99479 * 18 16 14 20 20 H 1.48502 * 109.47375 * 149.99671 * 18 16 14 21 21 H 1.48498 * 109.47050 * 29.99476 * 18 16 14 22 22 C 1.48191 * 111.07338 * 260.56485 * 2 1 3 23 23 H 1.09011 * 109.46861 * 60.00364 * 1 2 3 24 24 H 1.08995 * 109.47029 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47246 * 300.00392 * 1 2 3 26 26 H 1.09001 * 113.76054 * 108.10051 * 3 2 1 27 27 H 1.08998 * 113.85892 * 336.74276 * 3 2 1 28 28 H 1.09001 * 113.73302 * 269.25002 * 4 3 2 29 29 H 1.09005 * 109.46832 * 52.58746 * 5 4 3 30 30 H 1.08996 * 109.46792 * 292.58835 * 5 4 3 31 31 H 1.09003 * 108.97481 * 98.66591 * 7 6 5 32 32 H 1.08991 * 108.97716 * 339.94974 * 7 6 5 33 33 H 1.09000 * 108.91980 * 198.19177 * 8 7 6 34 34 H 1.09000 * 108.84070 * 79.58630 * 8 7 6 35 35 H 1.08997 * 108.77322 * 197.38247 * 9 8 7 36 36 H 1.09007 * 108.77372 * 79.21624 * 9 8 7 37 37 H 1.08998 * 109.57521 * 332.35450 * 10 9 8 38 38 H 1.08994 * 109.68435 * 212.03138 * 10 9 8 39 39 H 1.09001 * 109.05724 * 162.24876 * 11 10 9 40 40 H 1.09004 * 109.05249 * 43.34414 * 11 10 9 41 41 H 0.97001 * 120.00122 * 180.02562 * 17 16 14 42 42 H 1.09003 * 113.75406 * 23.24021 * 22 2 1 43 43 H 1.09003 * 113.82185 * 251.81455 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8791 -1.0360 5 6 3.2612 1.8569 -2.1882 6 7 4.3711 1.3714 -3.0190 7 6 4.1425 0.0118 -3.4441 8 6 5.4354 -0.8258 -3.4178 9 6 6.6532 -0.0392 -3.9457 10 6 6.3381 0.7852 -5.1643 11 6 5.9278 2.2051 -4.7139 12 6 4.5612 2.2330 -4.2049 13 1 3.8862 1.8978 -4.9924 14 6 4.2093 3.6512 -3.8361 15 1 4.0248 3.9108 -2.8041 16 6 4.1228 4.6172 -4.8161 17 7 3.8162 5.8549 -4.4942 18 14 4.4412 4.1679 -6.6011 19 1 5.8843 4.3417 -6.9055 20 1 3.6391 5.0517 -7.4847 21 1 4.0535 2.7532 -6.8322 22 6 2.0019 -0.2267 -1.3641 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 2.4460 1.6802 0.9482 27 1 1.3023 2.1211 -0.3936 28 1 3.9459 0.5068 -0.5953 29 1 3.5111 2.8385 -1.7855 30 1 2.3589 1.9319 -2.7949 31 1 3.7460 0.0198 -4.4594 32 1 3.4087 -0.4479 -2.7821 33 1 5.2939 -1.7136 -4.0342 34 1 5.6329 -1.1361 -2.3917 35 1 7.4455 -0.7450 -4.1950 36 1 7.0117 0.6229 -3.1575 37 1 5.5172 0.3251 -5.7142 38 1 7.2182 0.8453 -5.8045 39 1 6.0052 2.8841 -5.5631 40 1 6.6067 2.5397 -3.9295 41 1 3.7550 6.5344 -5.1837 42 1 1.3043 0.0405 -2.1580 43 1 2.4506 -1.2102 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260984780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:15 Heat of formation + Delta-G solvation = 52.242084 kcal Electronic energy + Delta-G solvation = -20210.711683 eV Core-core repulsion = 17485.362766 eV Total energy + Delta-G solvation = -2725.348917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.06760 -38.29848 -34.00805 -33.31202 -31.25034 -30.47925 -27.29992 -26.33321 -25.75282 -24.48748 -22.41414 -21.63743 -19.74160 -19.16963 -18.71613 -17.04362 -16.13010 -15.41565 -15.07832 -14.71181 -14.18122 -14.09057 -13.88013 -13.48738 -13.17982 -12.80504 -12.57475 -12.39780 -12.18285 -11.86330 -11.75239 -11.26988 -11.06709 -10.95073 -10.78036 -10.65023 -10.54794 -10.21826 -9.99485 -9.89964 -9.88359 -9.57098 -9.30192 -8.76013 -8.66267 -8.58995 -7.29442 -6.10676 -4.11084 3.24115 3.34498 3.35385 4.07145 4.36222 4.60223 4.84812 5.10097 5.18152 5.20004 5.40173 5.45502 5.48074 5.55729 5.61314 5.65162 5.78690 5.84165 5.85499 5.87981 5.95983 6.05633 6.08890 6.20678 6.29414 6.31269 6.36763 6.45672 6.55510 6.62254 6.73933 6.76230 6.85179 6.91938 6.95132 7.12507 7.18778 7.43734 7.67959 8.00338 8.18035 8.63576 8.93992 9.50923 11.00870 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.008035 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.446739 B = 3483.922999 C = 4522.721059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.489 5.489 3 C 0.006 3.994 4 C -0.111 4.111 5 C 0.079 3.921 6 N -0.515 5.515 7 C 0.038 3.962 8 C -0.104 4.104 9 C -0.103 4.103 10 C -0.124 4.124 11 C -0.101 4.101 12 C 0.181 3.819 13 H 0.000 1.000 14 C -0.524 4.524 15 H 0.089 0.911 16 C 0.073 3.927 17 N -0.898 5.898 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.295 1.295 21 H -0.266 1.266 22 C 0.000 4.000 23 H 0.034 0.966 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.039 0.961 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.067 0.933 41 H 0.264 0.736 42 H 0.068 0.932 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.650 -11.852 3.967 12.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.211 5.211 3 C -0.123 4.123 4 C -0.130 4.130 5 C -0.049 4.049 6 N -0.239 5.239 7 C -0.091 4.091 8 C -0.142 4.142 9 C -0.141 4.141 10 C -0.162 4.162 11 C -0.139 4.139 12 C 0.074 3.926 13 H 0.017 0.983 14 C -0.562 4.562 15 H 0.107 0.893 16 C -0.129 4.129 17 N -0.536 5.536 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.223 1.223 21 H -0.191 1.191 22 C -0.128 4.128 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.118 -12.103 4.729 13.042 hybrid contribution -0.964 0.430 -2.291 2.522 sum -2.083 -11.672 2.439 12.105 Atomic orbital electron populations 1.22838 0.90342 1.01854 1.00954 1.68513 1.08488 1.19228 1.24854 1.23952 0.97319 0.90896 1.00167 1.23170 0.97684 0.95659 0.96523 1.22109 0.92388 0.98270 0.92139 1.61541 1.40952 1.00680 1.20718 1.22167 0.96503 0.91635 0.98805 1.21893 0.95419 0.96953 0.99965 1.21129 0.96580 0.98176 0.98168 1.21469 0.99869 0.97670 0.97181 1.20895 0.99758 0.93608 0.99662 1.18601 0.92986 0.93405 0.87563 0.98286 1.21391 1.47416 0.90806 0.96548 0.89315 1.24951 0.94609 0.94889 0.98488 1.69878 1.48743 1.01472 1.33551 0.86985 0.78123 0.78619 0.85804 1.20237 1.22259 1.19052 1.24260 0.97469 1.00470 0.90645 0.94778 0.91627 0.91626 0.89535 0.91094 0.87958 0.88733 0.95330 0.95455 0.91401 0.93471 0.92687 0.94178 0.91413 0.93072 0.93413 0.93542 0.91448 0.92644 0.91422 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 9.65 60.07 0.58 0.46 16 2 N -0.49 -6.66 6.55 -246.40 -1.61 -8.28 16 3 C 0.01 0.08 7.55 -2.76 -0.02 0.06 16 4 C -0.11 -1.69 3.32 -89.69 -0.30 -1.99 16 5 C 0.08 1.49 4.04 -3.82 -0.02 1.47 16 6 N -0.52 -10.17 4.29 -232.86 -1.00 -11.17 16 7 C 0.04 0.65 4.87 -4.67 -0.02 0.63 16 8 C -0.10 -1.57 6.14 -25.50 -0.16 -1.72 16 9 C -0.10 -1.65 5.42 -27.32 -0.15 -1.79 16 10 C -0.12 -2.23 5.60 -27.21 -0.15 -2.39 16 11 C -0.10 -2.20 4.39 -29.32 -0.13 -2.32 16 12 C 0.18 4.17 1.32 -71.74 -0.09 4.08 16 13 H 0.00 -0.01 5.74 -51.93 -0.30 -0.31 16 14 C -0.52 -14.05 8.18 -34.44 -0.28 -14.33 16 15 H 0.09 2.54 5.59 -52.49 -0.29 2.24 16 16 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 17 N -0.90 -26.79 13.96 55.43 0.77 -26.01 16 18 Si 0.88 21.54 24.66 -169.99 -4.19 17.35 16 19 H -0.28 -6.64 6.92 56.52 0.39 -6.25 16 20 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.27 -6.35 6.33 56.52 0.36 -5.99 16 22 C 0.00 0.00 5.59 -2.64 -0.01 -0.02 16 23 H 0.03 0.40 7.63 -51.92 -0.40 0.00 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 28 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 29 H 0.09 2.01 5.80 -51.93 -0.30 1.71 16 30 H 0.03 0.58 7.79 -51.93 -0.40 0.17 16 31 H 0.03 0.50 6.51 -51.93 -0.34 0.16 16 32 H 0.07 1.03 3.35 -51.93 -0.17 0.86 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 1.17 7.38 -51.92 -0.38 0.78 16 37 H 0.05 0.93 7.15 -51.93 -0.37 0.56 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 1.07 3.77 -51.93 -0.20 0.88 16 40 H 0.07 1.49 7.59 -51.93 -0.39 1.09 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.07 0.95 7.35 -51.93 -0.38 0.57 16 43 H 0.09 1.12 7.31 -51.93 -0.38 0.74 16 LS Contribution 305.61 15.07 4.61 4.61 Total: -1.00 -28.35 305.61 -9.57 -37.92 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.29 Total: 1.51 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -0.85 Total: -15.92 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -1.84 Total: -45.46 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.19 Total: 17.35 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.35 -9.57 -37.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.160 kcal (2) G-P(sol) polarization free energy of solvation -28.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds