Wall clock time and date at job start Mon Mar 30 2020 03:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47957 * 111.00052 * 2 1 4 4 C 1.53938 * 86.17806 * 222.41598 * 3 2 1 5 5 C 1.53008 * 113.73390 * 138.08043 * 4 3 2 6 6 N 1.46896 * 109.46932 * 172.58426 * 5 4 3 7 7 C 1.44276 * 110.99692 * 53.41395 * 6 5 4 8 8 C 1.54070 * 111.98172 * 219.30403 * 7 6 5 9 9 C 1.54290 * 112.29028 * 318.91508 * 8 7 6 10 10 C 1.50459 * 113.02972 * 318.30095 * 9 8 7 11 11 C 1.54508 * 108.84730 * 92.15920 * 10 9 8 12 12 C 1.45863 * 111.59867 * 282.79844 * 11 10 9 13 13 H 1.08999 * 108.79174 * 300.54496 * 12 11 10 14 14 C 1.50704 * 108.79438 * 182.20845 * 12 11 10 15 15 H 1.07998 * 119.99495 * 245.73118 * 14 12 11 16 16 C 1.37875 * 120.00058 * 65.72605 * 14 12 11 17 17 N 1.31512 * 119.99875 * 180.02562 * 16 14 12 18 18 Si 1.86801 * 120.00161 * 0.02562 * 16 14 12 19 19 H 1.48497 * 109.47088 * 269.99479 * 18 16 14 20 20 H 1.48502 * 109.47375 * 149.99671 * 18 16 14 21 21 H 1.48498 * 109.47050 * 29.99476 * 18 16 14 22 22 C 1.48191 * 111.07338 * 260.56485 * 2 1 3 23 23 H 1.09011 * 109.46861 * 60.00364 * 1 2 3 24 24 H 1.08995 * 109.47029 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47246 * 300.00392 * 1 2 3 26 26 H 1.09001 * 113.76054 * 108.10051 * 3 2 1 27 27 H 1.08998 * 113.85892 * 336.74276 * 3 2 1 28 28 H 1.09001 * 113.73302 * 269.25002 * 4 3 2 29 29 H 1.09005 * 109.46832 * 52.58746 * 5 4 3 30 30 H 1.08996 * 109.46792 * 292.58835 * 5 4 3 31 31 H 1.09003 * 108.97481 * 98.66591 * 7 6 5 32 32 H 1.08991 * 108.97716 * 339.94974 * 7 6 5 33 33 H 1.09000 * 108.91980 * 198.19177 * 8 7 6 34 34 H 1.09000 * 108.84070 * 79.58630 * 8 7 6 35 35 H 1.08997 * 108.77322 * 197.38247 * 9 8 7 36 36 H 1.09007 * 108.77372 * 79.21624 * 9 8 7 37 37 H 1.08998 * 109.57521 * 332.35450 * 10 9 8 38 38 H 1.08994 * 109.68435 * 212.03138 * 10 9 8 39 39 H 1.09001 * 109.05724 * 162.24876 * 11 10 9 40 40 H 1.09004 * 109.05249 * 43.34414 * 11 10 9 41 41 H 0.97001 * 120.00122 * 180.02562 * 17 16 14 42 42 H 1.09003 * 113.75406 * 23.24021 * 22 2 1 43 43 H 1.09003 * 113.82185 * 251.81455 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8791 -1.0360 5 6 3.2612 1.8569 -2.1882 6 7 4.3711 1.3714 -3.0190 7 6 4.1425 0.0118 -3.4441 8 6 5.4354 -0.8258 -3.4178 9 6 6.6532 -0.0392 -3.9457 10 6 6.3381 0.7852 -5.1643 11 6 5.9278 2.2051 -4.7139 12 6 4.5612 2.2330 -4.2049 13 1 3.8862 1.8978 -4.9924 14 6 4.2093 3.6512 -3.8361 15 1 4.0248 3.9108 -2.8041 16 6 4.1228 4.6172 -4.8161 17 7 3.8162 5.8549 -4.4942 18 14 4.4412 4.1679 -6.6011 19 1 5.8843 4.3417 -6.9055 20 1 3.6391 5.0517 -7.4847 21 1 4.0535 2.7532 -6.8322 22 6 2.0019 -0.2267 -1.3641 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 2.4460 1.6802 0.9482 27 1 1.3023 2.1211 -0.3936 28 1 3.9459 0.5068 -0.5953 29 1 3.5111 2.8385 -1.7855 30 1 2.3589 1.9319 -2.7949 31 1 3.7460 0.0198 -4.4594 32 1 3.4087 -0.4479 -2.7821 33 1 5.2939 -1.7136 -4.0342 34 1 5.6329 -1.1361 -2.3917 35 1 7.4455 -0.7450 -4.1950 36 1 7.0117 0.6229 -3.1575 37 1 5.5172 0.3251 -5.7142 38 1 7.2182 0.8453 -5.8045 39 1 6.0052 2.8841 -5.5631 40 1 6.6067 2.5397 -3.9295 41 1 3.7550 6.5344 -5.1837 42 1 1.3043 0.0405 -2.1580 43 1 2.4506 -1.2102 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260984780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:14 Heat of formation + Delta-G solvation = 31.445050 kcal Electronic energy + Delta-G solvation = -20211.613510 eV Core-core repulsion = 17485.362766 eV Total energy + Delta-G solvation = -2726.250744 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34824 -39.76541 -35.44918 -35.16707 -33.08753 -31.68618 -28.71928 -27.91475 -27.08550 -25.80732 -24.12472 -22.91694 -21.37664 -20.46995 -20.10153 -19.00331 -17.62396 -16.78761 -16.42744 -16.19781 -15.77333 -15.46707 -15.23694 -14.99828 -14.77862 -14.32911 -14.00695 -13.68367 -13.52016 -13.39982 -13.34521 -12.87466 -12.49305 -12.48793 -12.27814 -12.15861 -11.85779 -11.72741 -11.48969 -11.33441 -11.28614 -11.13499 -10.93126 -10.75166 -10.57203 -9.80437 -8.93579 -8.29202 -6.32944 1.26500 1.30358 1.39294 2.28747 2.95512 3.04592 3.16096 3.59078 3.87936 4.07089 4.12517 4.17906 4.24573 4.37954 4.44204 4.46623 4.50449 4.57006 4.58539 4.64799 4.68068 4.78215 4.80370 4.87396 4.92537 4.95314 5.00223 5.02779 5.17822 5.28721 5.30688 5.37585 5.38917 5.46699 5.52831 5.56475 5.65420 5.86167 6.05645 6.08725 6.42874 6.76467 6.83075 7.33007 8.85187 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.008035 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.446739 B = 3483.922999 C = 4522.721059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.490 5.490 3 C 0.007 3.993 4 C -0.106 4.106 5 C 0.088 3.912 6 N -0.516 5.516 7 C 0.034 3.966 8 C -0.101 4.101 9 C -0.103 4.103 10 C -0.117 4.117 11 C -0.103 4.103 12 C 0.189 3.811 13 H -0.016 1.016 14 C -0.522 4.522 15 H 0.058 0.942 16 C 0.017 3.983 17 N -0.945 5.945 18 Si 0.932 3.068 19 H -0.265 1.265 20 H -0.297 1.297 21 H -0.253 1.253 22 C 0.007 3.993 23 H 0.030 0.970 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.008 0.992 31 H 0.015 0.985 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.031 0.969 40 H 0.055 0.945 41 H 0.264 0.736 42 H 0.064 0.936 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.156 -14.969 3.700 15.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.213 5.213 3 C -0.122 4.122 4 C -0.125 4.125 5 C -0.041 4.041 6 N -0.240 5.240 7 C -0.095 4.095 8 C -0.139 4.139 9 C -0.140 4.140 10 C -0.155 4.155 11 C -0.141 4.141 12 C 0.082 3.918 13 H 0.002 0.998 14 C -0.560 4.560 15 H 0.076 0.924 16 C -0.180 4.180 17 N -0.586 5.586 18 Si 0.759 3.241 19 H -0.191 1.191 20 H -0.224 1.224 21 H -0.177 1.177 22 C -0.121 4.121 23 H 0.049 0.951 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.026 0.974 31 H 0.034 0.966 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.620 -15.250 4.473 15.904 hybrid contribution -1.165 1.424 -2.100 2.792 sum -1.784 -13.826 2.372 14.141 Atomic orbital electron populations 1.22899 0.88944 1.02954 1.01300 1.68514 1.09919 1.18391 1.24428 1.23941 0.96836 0.91321 1.00105 1.23043 0.98499 0.95587 0.95338 1.21936 0.91119 0.98015 0.92998 1.61569 1.41298 1.01787 1.19350 1.22315 0.98623 0.90094 0.98449 1.21900 0.93538 0.97033 1.01402 1.21115 0.97894 0.98355 0.96671 1.21420 1.00627 0.95008 0.98421 1.20811 0.98395 0.96243 0.98680 1.18459 0.93520 0.91497 0.88344 0.99813 1.21722 1.45948 0.93090 0.95248 0.92390 1.25706 0.94806 0.94729 1.02768 1.70019 1.50960 1.02694 1.34891 0.86045 0.78451 0.78796 0.80771 1.19071 1.22422 1.17737 1.24209 0.96660 1.00386 0.90832 0.95126 0.90135 0.90664 0.88614 0.91770 0.87724 0.92254 0.97412 0.96640 0.89486 0.90939 0.91320 0.91200 0.93048 0.93005 0.91451 0.95073 0.92610 0.92680 0.91815 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.25 9.65 127.69 1.23 0.98 16 2 N -0.49 -12.36 6.55 -933.47 -6.12 -18.48 16 3 C 0.01 0.20 7.55 86.41 0.65 0.85 16 4 C -0.11 -3.13 3.32 -10.15 -0.03 -3.16 16 5 C 0.09 3.41 4.04 86.31 0.35 3.75 16 6 N -0.52 -20.35 4.29 -890.63 -3.82 -24.17 16 7 C 0.03 1.09 4.87 87.16 0.42 1.51 16 8 C -0.10 -2.65 6.14 31.39 0.19 -2.46 16 9 C -0.10 -2.94 5.42 30.21 0.16 -2.78 16 10 C -0.12 -3.90 5.60 30.28 0.17 -3.73 16 11 C -0.10 -4.42 4.39 28.92 0.13 -4.29 16 12 C 0.19 8.80 1.32 41.81 0.06 8.85 16 13 H -0.02 -0.77 5.74 -2.39 -0.01 -0.78 16 14 C -0.52 -29.19 8.18 25.60 0.21 -28.98 16 15 H 0.06 3.54 5.59 -2.91 -0.02 3.53 16 16 C 0.02 1.01 5.45 84.65 0.46 1.47 16 17 N -0.94 -58.67 13.96 21.45 0.30 -58.37 16 18 Si 0.93 45.09 24.66 68.60 1.69 46.78 16 19 H -0.26 -12.26 6.92 99.48 0.69 -11.57 16 20 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 21 H -0.25 -11.61 6.33 99.48 0.63 -10.98 16 22 C 0.01 0.19 5.59 86.36 0.48 0.67 16 23 H 0.03 0.67 7.63 -2.38 -0.02 0.65 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.06 1.83 7.88 -2.39 -0.02 1.81 16 28 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 29 H 0.06 2.71 5.80 -2.38 -0.01 2.69 16 30 H 0.01 0.32 7.79 -2.39 -0.02 0.30 16 31 H 0.02 0.54 6.51 -2.39 -0.02 0.52 16 32 H 0.09 2.43 3.35 -2.39 -0.01 2.42 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.65 7.38 -2.38 -0.02 1.63 16 37 H 0.05 1.72 7.15 -2.39 -0.02 1.71 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.03 1.41 3.77 -2.39 -0.01 1.40 16 40 H 0.06 2.47 7.59 -2.39 -0.02 2.46 16 41 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.06 1.70 7.35 -2.39 -0.02 1.68 16 43 H 0.10 2.31 7.31 -2.39 -0.02 2.29 16 Total: -1.00 -62.94 305.61 -2.58 -65.52 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.88 Total: 16.04 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 4.49 Total: -27.32 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -9.64 Total: -101.02 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.69 Total: 46.78 kcal Total: -62.94 -2.58 -65.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.967 kcal (2) G-P(sol) polarization free energy of solvation -62.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds