Wall clock time and date at job start Mon Mar 30 2020 03:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47958 * 111.00056 * 2 1 4 4 C 1.53934 * 86.18028 * 222.41543 * 3 2 1 5 5 C 1.53002 * 113.73284 * 138.07928 * 4 3 2 6 6 N 1.46896 * 109.47359 * 174.71130 * 5 4 3 7 7 C 1.47630 * 110.99754 * 63.58920 * 6 5 4 8 8 C 1.50823 * 108.04583 * 150.32699 * 7 6 5 9 9 C 1.53815 * 111.62020 * 95.05801 * 8 7 6 10 10 C 1.54168 * 111.97311 * 319.04492 * 9 8 7 11 11 C 1.50760 * 112.61433 * 318.49107 * 10 9 8 12 12 C 1.39775 * 111.00018 * 294.68679 * 6 5 4 13 13 H 1.08998 * 109.02307 * 68.62571 * 12 6 5 14 14 C 1.50692 * 109.02547 * 309.72070 * 12 6 5 15 15 H 1.08003 * 120.00108 * 354.76926 * 14 12 6 16 16 C 1.37875 * 120.00347 * 174.77380 * 14 12 6 17 17 N 1.31521 * 120.00080 * 180.02562 * 16 14 12 18 18 Si 1.86796 * 119.99799 * 359.97438 * 16 14 12 19 19 H 1.48507 * 109.47026 * 90.00371 * 18 16 14 20 20 H 1.48501 * 109.47444 * 330.00321 * 18 16 14 21 21 H 1.48501 * 109.47309 * 210.00069 * 18 16 14 22 22 C 1.47965 * 111.00222 * 260.63987 * 2 1 3 23 23 H 1.09005 * 109.46743 * 60.00130 * 1 2 3 24 24 H 1.08996 * 109.47359 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47196 * 299.99965 * 1 2 3 26 26 H 1.09004 * 113.76032 * 108.10064 * 3 2 1 27 27 H 1.09001 * 113.85974 * 336.74692 * 3 2 1 28 28 H 1.08994 * 113.73606 * 269.25654 * 4 3 2 29 29 H 1.09002 * 109.47459 * 54.71265 * 5 4 3 30 30 H 1.08996 * 109.47437 * 294.71330 * 5 4 3 31 31 H 1.09005 * 109.74667 * 269.95969 * 7 6 5 32 32 H 1.08998 * 109.75351 * 30.63592 * 7 6 5 33 33 H 1.09000 * 109.05202 * 215.61197 * 8 7 6 34 34 H 1.09008 * 109.04664 * 334.58195 * 8 7 6 35 35 H 1.09001 * 108.98240 * 79.69056 * 9 8 7 36 36 H 1.09009 * 108.97972 * 198.48751 * 9 8 7 37 37 H 1.09004 * 108.85527 * 79.29407 * 10 9 8 38 38 H 1.09002 * 108.85845 * 197.78281 * 10 9 8 39 39 H 1.08996 * 109.53892 * 333.13722 * 11 10 9 40 40 H 1.09008 * 109.54004 * 212.87701 * 11 10 9 41 41 H 0.96999 * 119.99836 * 179.97438 * 17 16 14 42 42 H 1.09003 * 113.75568 * 23.26737 * 22 2 1 43 43 H 1.08995 * 113.75668 * 251.90348 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 -1.0360 5 6 3.2612 1.8569 -2.1881 6 7 4.3371 1.3460 -3.0478 7 6 3.9487 0.0692 -3.6790 8 6 4.6573 -0.0302 -5.0067 9 6 5.9677 -0.8274 -4.8914 10 6 6.7429 -0.4801 -3.6049 11 6 6.7354 0.9973 -3.3045 12 6 5.5542 1.3135 -2.3613 13 1 5.5048 0.5482 -1.5867 14 6 5.7884 2.6535 -1.7130 15 1 5.1047 3.4692 -1.8966 16 6 6.8756 2.8385 -0.8855 17 7 7.0798 4.0079 -0.3193 18 14 8.0578 1.4276 -0.5673 19 1 9.1410 1.4508 -1.5831 20 1 7.3253 0.1388 -0.6542 21 1 8.6472 1.5717 0.7881 22 6 1.9993 -0.2247 -1.3630 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 2.4460 1.6802 0.9483 27 1 1.3022 2.1212 -0.3936 28 1 3.9458 0.5068 -0.5953 29 1 3.5478 2.8288 -1.7862 30 1 2.3472 1.9609 -2.7729 31 1 4.2454 -0.7627 -3.0400 32 1 2.8700 0.0480 -3.8339 33 1 4.0019 -0.5248 -5.7236 34 1 4.8833 0.9740 -5.3654 35 1 5.7358 -1.8924 -4.8890 36 1 6.5959 -0.6036 -5.7537 37 1 6.2918 -1.0120 -2.7672 38 1 7.7758 -0.8102 -3.7159 39 1 6.6211 1.5574 -4.2325 40 1 7.6722 1.2760 -2.8219 41 1 7.8444 4.1379 0.2631 42 1 1.3010 0.0441 -2.1557 43 1 2.4460 -1.2089 -1.5036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260984782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:17 Heat of formation + Delta-G solvation = 48.043790 kcal Electronic energy + Delta-G solvation = -20457.572973 eV Core-core repulsion = 17732.042004 eV Total energy + Delta-G solvation = -2725.530969 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.07376 -38.34843 -34.26694 -32.95911 -31.08920 -30.39178 -27.10878 -26.28464 -25.64277 -24.42320 -22.61060 -22.03914 -19.78532 -18.87761 -18.73213 -16.80914 -15.98383 -15.48057 -14.96060 -14.60981 -14.51630 -14.05312 -13.83044 -13.72862 -13.04144 -12.85379 -12.50933 -12.33840 -11.91769 -11.80238 -11.58890 -11.42608 -11.16119 -11.02156 -10.69400 -10.57134 -10.48273 -10.30435 -10.11069 -9.92462 -9.70306 -9.54002 -9.41243 -8.85082 -8.64797 -8.50418 -7.07437 -6.04811 -4.02817 3.28504 3.40154 3.41814 4.19967 4.42691 4.74781 5.00065 5.07409 5.24078 5.24903 5.31797 5.40008 5.44794 5.51171 5.62276 5.72356 5.81421 5.84719 5.91754 5.94459 5.97845 6.08730 6.12813 6.21215 6.25752 6.30656 6.35386 6.46684 6.49477 6.57396 6.63311 6.81654 6.83461 6.91957 7.03467 7.04701 7.26722 7.40232 7.65911 8.14728 8.31026 8.82492 9.01799 9.59186 11.07198 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016819 B = 0.009726 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.348070 B = 2878.252597 C = 3951.476079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.489 5.489 3 C 0.010 3.990 4 C -0.137 4.137 5 C 0.077 3.923 6 N -0.531 5.531 7 C 0.064 3.936 8 C -0.116 4.116 9 C -0.111 4.111 10 C -0.125 4.125 11 C -0.120 4.120 12 C 0.200 3.800 13 H -0.009 1.009 14 C -0.506 4.506 15 H 0.084 0.916 16 C 0.072 3.928 17 N -0.899 5.899 18 Si 0.876 3.124 19 H -0.278 1.278 20 H -0.264 1.264 21 H -0.297 1.297 22 C 0.004 3.996 23 H 0.031 0.969 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.050 0.950 31 H 0.033 0.967 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.263 0.737 42 H 0.065 0.935 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.690 -8.529 -4.787 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.211 5.211 3 C -0.119 4.119 4 C -0.157 4.157 5 C -0.051 4.051 6 N -0.253 5.253 7 C -0.064 4.064 8 C -0.154 4.154 9 C -0.149 4.149 10 C -0.163 4.163 11 C -0.158 4.158 12 C 0.090 3.910 13 H 0.008 0.992 14 C -0.544 4.544 15 H 0.101 0.899 16 C -0.129 4.129 17 N -0.538 5.538 18 Si 0.706 3.294 19 H -0.205 1.205 20 H -0.189 1.189 21 H -0.225 1.225 22 C -0.125 4.125 23 H 0.050 0.950 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.340 -8.585 -4.490 12.784 hybrid contribution 0.387 -0.820 0.298 0.954 sum -7.953 -9.405 -4.192 13.011 Atomic orbital electron populations 1.22829 0.90627 1.01696 1.00700 1.68470 1.08158 1.19640 1.24832 1.23893 0.96962 0.90364 1.00729 1.23593 0.98019 0.96438 0.97687 1.22194 0.92746 0.99444 0.90730 1.58923 1.03340 1.26249 1.36775 1.21748 0.97950 0.91386 0.95282 1.21404 0.95583 1.01212 0.97156 1.21865 0.96598 0.98673 0.97761 1.21553 0.98638 0.98905 0.97173 1.21836 0.99772 0.93099 1.01060 1.18537 0.85520 0.97061 0.89847 0.99228 1.21149 1.10919 0.96001 1.26288 0.89856 1.24923 0.97405 0.95137 0.95481 1.69885 1.29525 1.22586 1.31785 0.87010 0.81876 0.84071 0.76451 1.20522 1.18863 1.22493 1.24149 0.97432 1.00503 0.90430 0.95043 0.91770 0.91718 0.89472 0.91526 0.87823 0.88049 0.93186 0.94907 0.92312 0.93163 0.90533 0.93370 0.92883 0.92972 0.93738 0.91500 0.92643 0.92746 0.91710 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.65 60.06 0.58 0.47 16 2 N -0.49 -7.39 6.56 -246.61 -1.62 -9.01 16 3 C 0.01 0.15 7.55 -2.77 -0.02 0.13 16 4 C -0.14 -2.37 3.42 -89.69 -0.31 -2.68 16 5 C 0.08 1.41 4.72 -3.83 -0.02 1.39 16 6 N -0.53 -10.38 3.95 -233.12 -0.92 -11.30 16 7 C 0.06 1.04 3.92 -4.51 -0.02 1.03 16 8 C -0.12 -1.75 5.41 -27.40 -0.15 -1.90 16 9 C -0.11 -1.68 5.91 -25.70 -0.15 -1.83 16 10 C -0.13 -2.27 5.31 -27.24 -0.14 -2.42 16 11 C -0.12 -2.57 4.25 -27.10 -0.12 -2.68 16 12 C 0.20 4.51 0.73 -71.79 -0.05 4.45 16 13 H -0.01 -0.23 4.61 -51.93 -0.24 -0.47 16 14 C -0.51 -13.47 8.12 -34.44 -0.28 -13.75 16 15 H 0.08 2.40 6.35 -52.48 -0.33 2.07 16 16 C 0.07 2.02 5.43 -17.82 -0.10 1.93 16 17 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 18 Si 0.88 21.75 24.56 -169.99 -4.17 17.57 16 19 H -0.28 -6.78 6.79 56.52 0.38 -6.40 16 20 H -0.26 -6.35 6.42 56.52 0.36 -5.99 16 21 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 22 C 0.00 0.05 5.87 -2.77 -0.02 0.04 16 23 H 0.03 0.36 7.62 -51.93 -0.40 -0.04 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.07 0.95 7.88 -51.93 -0.41 0.54 16 28 H 0.10 2.14 6.34 -51.93 -0.33 1.81 16 29 H 0.10 2.15 5.62 -51.93 -0.29 1.85 16 30 H 0.05 0.81 7.67 -51.93 -0.40 0.41 16 31 H 0.03 0.56 6.63 -51.93 -0.34 0.22 16 32 H 0.06 0.86 6.86 -51.93 -0.36 0.50 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.27 7.26 -51.92 -0.38 0.90 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 37 H 0.05 0.99 6.58 -51.93 -0.34 0.64 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.42 7.11 -51.93 -0.37 1.05 16 40 H 0.06 1.30 3.92 -51.92 -0.20 1.09 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.06 0.87 7.17 -51.93 -0.37 0.50 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 304.70 15.07 4.59 4.59 Total: -1.00 -28.39 304.70 -9.47 -37.86 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -7.33 Total: 2.20 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -0.79 Total: -15.82 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -1.76 Total: -46.41 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.17 Total: 17.57 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.39 -9.47 -37.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.908 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds