Wall clock time and date at job start Mon Mar 30 2020 03:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47958 * 111.00056 * 2 1 4 4 C 1.53934 * 86.18028 * 222.41543 * 3 2 1 5 5 C 1.53002 * 113.73284 * 138.07928 * 4 3 2 6 6 N 1.46896 * 109.47359 * 174.71130 * 5 4 3 7 7 C 1.47630 * 110.99754 * 63.58920 * 6 5 4 8 8 C 1.50823 * 108.04583 * 150.32699 * 7 6 5 9 9 C 1.53815 * 111.62020 * 95.05801 * 8 7 6 10 10 C 1.54168 * 111.97311 * 319.04492 * 9 8 7 11 11 C 1.50760 * 112.61433 * 318.49107 * 10 9 8 12 12 C 1.39775 * 111.00018 * 294.68679 * 6 5 4 13 13 H 1.08998 * 109.02307 * 68.62571 * 12 6 5 14 14 C 1.50692 * 109.02547 * 309.72070 * 12 6 5 15 15 H 1.08003 * 120.00108 * 354.76926 * 14 12 6 16 16 C 1.37875 * 120.00347 * 174.77380 * 14 12 6 17 17 N 1.31521 * 120.00080 * 180.02562 * 16 14 12 18 18 Si 1.86796 * 119.99799 * 359.97438 * 16 14 12 19 19 H 1.48507 * 109.47026 * 90.00371 * 18 16 14 20 20 H 1.48501 * 109.47444 * 330.00321 * 18 16 14 21 21 H 1.48501 * 109.47309 * 210.00069 * 18 16 14 22 22 C 1.47965 * 111.00222 * 260.63987 * 2 1 3 23 23 H 1.09005 * 109.46743 * 60.00130 * 1 2 3 24 24 H 1.08996 * 109.47359 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47196 * 299.99965 * 1 2 3 26 26 H 1.09004 * 113.76032 * 108.10064 * 3 2 1 27 27 H 1.09001 * 113.85974 * 336.74692 * 3 2 1 28 28 H 1.08994 * 113.73606 * 269.25654 * 4 3 2 29 29 H 1.09002 * 109.47459 * 54.71265 * 5 4 3 30 30 H 1.08996 * 109.47437 * 294.71330 * 5 4 3 31 31 H 1.09005 * 109.74667 * 269.95969 * 7 6 5 32 32 H 1.08998 * 109.75351 * 30.63592 * 7 6 5 33 33 H 1.09000 * 109.05202 * 215.61197 * 8 7 6 34 34 H 1.09008 * 109.04664 * 334.58195 * 8 7 6 35 35 H 1.09001 * 108.98240 * 79.69056 * 9 8 7 36 36 H 1.09009 * 108.97972 * 198.48751 * 9 8 7 37 37 H 1.09004 * 108.85527 * 79.29407 * 10 9 8 38 38 H 1.09002 * 108.85845 * 197.78281 * 10 9 8 39 39 H 1.08996 * 109.53892 * 333.13722 * 11 10 9 40 40 H 1.09008 * 109.54004 * 212.87701 * 11 10 9 41 41 H 0.96999 * 119.99836 * 179.97438 * 17 16 14 42 42 H 1.09003 * 113.75568 * 23.26737 * 22 2 1 43 43 H 1.08995 * 113.75668 * 251.90348 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 -1.0360 5 6 3.2612 1.8569 -2.1881 6 7 4.3371 1.3460 -3.0478 7 6 3.9487 0.0692 -3.6790 8 6 4.6573 -0.0302 -5.0067 9 6 5.9677 -0.8274 -4.8914 10 6 6.7429 -0.4801 -3.6049 11 6 6.7354 0.9973 -3.3045 12 6 5.5542 1.3135 -2.3613 13 1 5.5048 0.5482 -1.5867 14 6 5.7884 2.6535 -1.7130 15 1 5.1047 3.4692 -1.8966 16 6 6.8756 2.8385 -0.8855 17 7 7.0798 4.0079 -0.3193 18 14 8.0578 1.4276 -0.5673 19 1 9.1410 1.4508 -1.5831 20 1 7.3253 0.1388 -0.6542 21 1 8.6472 1.5717 0.7881 22 6 1.9993 -0.2247 -1.3630 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 2.4460 1.6802 0.9483 27 1 1.3022 2.1212 -0.3936 28 1 3.9458 0.5068 -0.5953 29 1 3.5478 2.8288 -1.7862 30 1 2.3472 1.9609 -2.7729 31 1 4.2454 -0.7627 -3.0400 32 1 2.8700 0.0480 -3.8339 33 1 4.0019 -0.5248 -5.7236 34 1 4.8833 0.9740 -5.3654 35 1 5.7358 -1.8924 -4.8890 36 1 6.5959 -0.6036 -5.7537 37 1 6.2918 -1.0120 -2.7672 38 1 7.7758 -0.8102 -3.7159 39 1 6.6211 1.5574 -4.2325 40 1 7.6722 1.2760 -2.8219 41 1 7.8444 4.1379 0.2631 42 1 1.3010 0.0441 -2.1557 43 1 2.4460 -1.2089 -1.5036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260984782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:17 Heat of formation + Delta-G solvation = 27.075739 kcal Electronic energy + Delta-G solvation = -20458.482216 eV Core-core repulsion = 17732.042004 eV Total energy + Delta-G solvation = -2726.440212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.43565 -39.76188 -35.68636 -34.86584 -32.85369 -31.61845 -28.53567 -27.88236 -26.97746 -25.77612 -24.27692 -23.38736 -21.24649 -20.37510 -20.11307 -18.77009 -17.50020 -16.90888 -16.30675 -16.04677 -15.95449 -15.56609 -15.32500 -15.09096 -14.75505 -14.19641 -14.01530 -13.62494 -13.48815 -13.22982 -13.10566 -12.78649 -12.65619 -12.50742 -12.31324 -12.19847 -11.87437 -11.78163 -11.53655 -11.41576 -11.13743 -11.11949 -11.02958 -10.80919 -10.55824 -9.80740 -8.65394 -8.24592 -6.24425 1.27040 1.33038 1.41491 2.32826 3.01782 3.08640 3.33340 3.69915 3.82154 4.05106 4.08481 4.16925 4.21619 4.38421 4.40998 4.46751 4.51892 4.55510 4.60174 4.68749 4.74844 4.80183 4.83867 4.86096 4.95739 4.96582 5.00967 5.07135 5.12555 5.29520 5.32768 5.33914 5.39931 5.44351 5.48129 5.56113 5.68907 5.78819 6.14581 6.16402 6.58582 6.86423 7.05650 7.42905 8.90667 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016819 B = 0.009726 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.348070 B = 2878.252597 C = 3951.476079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.505 5.505 3 C 0.013 3.987 4 C -0.142 4.142 5 C 0.083 3.917 6 N -0.544 5.544 7 C 0.066 3.934 8 C -0.115 4.115 9 C -0.107 4.107 10 C -0.124 4.124 11 C -0.118 4.118 12 C 0.215 3.785 13 H -0.026 1.026 14 C -0.496 4.496 15 H 0.050 0.950 16 C 0.017 3.983 17 N -0.947 5.947 18 Si 0.930 3.070 19 H -0.268 1.268 20 H -0.253 1.253 21 H -0.302 1.302 22 C 0.021 3.979 23 H 0.044 0.956 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.028 0.972 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.033 0.967 41 H 0.262 0.738 42 H 0.088 0.912 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.168 -11.194 -6.619 16.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.228 5.228 3 C -0.117 4.117 4 C -0.163 4.163 5 C -0.045 4.045 6 N -0.266 5.266 7 C -0.060 4.060 8 C -0.153 4.153 9 C -0.144 4.144 10 C -0.162 4.162 11 C -0.156 4.156 12 C 0.104 3.896 13 H -0.009 1.009 14 C -0.535 4.535 15 H 0.068 0.932 16 C -0.180 4.180 17 N -0.588 5.588 18 Si 0.758 3.242 19 H -0.194 1.194 20 H -0.177 1.177 21 H -0.230 1.230 22 C -0.107 4.107 23 H 0.063 0.937 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.835 -11.272 -6.344 16.249 hybrid contribution 0.740 0.075 0.859 1.137 sum -9.095 -11.197 -5.485 15.433 Atomic orbital electron populations 1.22890 0.88444 1.02859 1.01640 1.68428 1.10444 1.18692 1.25225 1.23846 0.96858 0.91504 0.99450 1.23404 0.97377 0.97707 0.97765 1.22073 0.93344 0.97737 0.91391 1.58891 1.02563 1.28647 1.36503 1.21856 0.99655 0.89157 0.95382 1.21412 0.96221 1.00725 0.96900 1.21851 0.96293 1.00084 0.96195 1.21510 1.00083 0.95812 0.98764 1.21727 0.97799 0.95927 1.00183 1.18249 0.87723 0.93747 0.89835 1.00898 1.21460 1.09377 0.97128 1.25509 0.93228 1.25631 0.99365 0.97177 0.95788 1.70026 1.30572 1.24751 1.33465 0.86117 0.80219 0.81754 0.76084 1.19419 1.17697 1.22992 1.24073 0.96386 0.99285 0.90978 0.93749 0.90476 0.91163 0.91234 0.89843 0.91797 0.92126 0.90315 0.95326 0.89849 0.89778 0.92293 0.90930 0.91559 0.93889 0.92578 0.91672 0.94866 0.92913 0.89398 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.20 9.65 127.69 1.23 1.03 16 2 N -0.51 -14.34 6.56 -934.14 -6.12 -20.46 16 3 C 0.01 0.40 7.55 86.41 0.65 1.05 16 4 C -0.14 -4.89 3.42 -10.15 -0.03 -4.92 16 5 C 0.08 3.02 4.72 86.30 0.41 3.43 16 6 N -0.54 -20.96 3.95 -891.47 -3.52 -24.49 16 7 C 0.07 1.97 3.92 85.46 0.34 2.31 16 8 C -0.11 -3.04 5.41 30.16 0.16 -2.88 16 9 C -0.11 -2.80 5.91 31.26 0.18 -2.62 16 10 C -0.12 -4.22 5.31 30.26 0.16 -4.06 16 11 C -0.12 -5.01 4.25 30.35 0.13 -4.88 16 12 C 0.21 9.79 0.73 45.94 0.03 9.83 16 13 H -0.03 -1.27 4.61 -2.39 -0.01 -1.28 16 14 C -0.50 -27.64 8.12 25.60 0.21 -27.43 16 15 H 0.05 3.05 6.35 -2.91 -0.02 3.03 16 16 C 0.02 1.01 5.43 84.65 0.46 1.47 16 17 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 18 Si 0.93 46.10 24.56 68.60 1.68 47.78 16 19 H -0.27 -12.74 6.79 99.48 0.68 -12.06 16 20 H -0.25 -11.94 6.42 99.48 0.64 -11.30 16 21 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 22 C 0.02 0.57 5.87 86.40 0.51 1.07 16 23 H 0.04 0.84 7.62 -2.38 -0.02 0.82 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 27 H 0.08 2.28 7.88 -2.39 -0.02 2.26 16 28 H 0.06 2.72 6.34 -2.39 -0.02 2.71 16 29 H 0.06 2.70 5.62 -2.39 -0.01 2.69 16 30 H 0.08 2.40 7.67 -2.39 -0.02 2.38 16 31 H 0.03 0.89 6.63 -2.38 -0.02 0.88 16 32 H 0.08 2.07 6.86 -2.39 -0.02 2.06 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.80 7.26 -2.38 -0.02 1.78 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.04 1.53 6.58 -2.39 -0.02 1.52 16 38 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 2.74 7.11 -2.39 -0.02 2.72 16 40 H 0.03 1.54 3.92 -2.38 -0.01 1.53 16 41 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 42 H 0.09 1.97 7.17 -2.39 -0.02 1.95 16 43 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -64.38 304.70 -2.35 -66.73 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.87 Total: 16.03 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 4.44 Total: -26.62 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -9.35 Total: -103.92 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.68 Total: 47.78 kcal Total: -64.38 -2.35 -66.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.806 kcal (2) G-P(sol) polarization free energy of solvation -64.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds