Wall clock time and date at job start Mon Mar 30 2020 03:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46849 * 110.99940 * 2 1 4 4 C 1.53051 * 109.51693 * 185.88871 * 3 2 1 5 5 C 1.53035 * 109.25904 * 300.90468 * 4 3 2 6 6 C 1.53024 * 109.31564 * 57.56019 * 5 4 3 7 7 C 1.46843 * 111.00422 * 124.23955 * 2 1 3 8 8 C 1.53016 * 109.54693 * 177.63922 * 5 4 3 9 9 C 1.53051 * 109.27476 * 62.47443 * 8 5 4 10 10 N 1.46851 * 109.52517 * 59.06152 * 9 8 5 11 11 C 1.46901 * 111.00189 * 174.13604 * 10 9 8 12 12 C 1.50701 * 109.47027 * 64.89797 * 11 10 9 13 13 H 1.07999 * 120.00016 * 354.99434 * 12 11 10 14 14 C 1.37878 * 119.99920 * 174.99354 * 12 11 10 15 15 N 1.31509 * 120.00150 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99909 * 179.97438 * 14 12 11 17 17 H 1.48513 * 109.47274 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47353 * 119.99903 * 16 14 12 19 19 H 1.48500 * 109.47629 * 240.00138 * 16 14 12 20 20 C 1.46849 * 111.21648 * 298.25030 * 10 9 8 21 21 C 1.53034 * 109.53001 * 297.52739 * 5 4 3 22 22 H 1.08997 * 109.47322 * 59.99969 * 1 2 3 23 23 H 1.09002 * 109.46686 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47021 * 299.99420 * 1 2 3 25 25 H 1.09000 * 109.45985 * 65.87492 * 3 2 1 26 26 H 1.09003 * 109.46255 * 305.90500 * 3 2 1 27 27 H 1.09000 * 109.51086 * 180.96984 * 4 3 2 28 28 H 1.09001 * 109.53770 * 60.85939 * 4 3 2 29 29 H 1.08994 * 109.50653 * 62.39741 * 6 5 4 30 30 H 1.09005 * 109.50191 * 182.52413 * 6 5 4 31 31 H 1.09001 * 109.46064 * 294.14977 * 7 2 1 32 32 H 1.08998 * 109.46087 * 54.11603 * 7 2 1 33 33 H 1.09002 * 109.50778 * 302.53619 * 8 5 4 34 34 H 1.09002 * 109.53801 * 182.43422 * 8 5 4 35 35 H 1.09002 * 109.46611 * 299.04731 * 9 8 5 36 36 H 1.09001 * 109.45789 * 179.07163 * 9 8 5 37 37 H 1.09005 * 109.47266 * 304.89448 * 11 10 9 38 38 H 1.09003 * 109.47094 * 184.89640 * 11 10 9 39 39 H 0.97000 * 120.00449 * 180.02562 * 15 14 12 40 40 H 1.08999 * 109.46208 * 181.78051 * 20 10 9 41 41 H 1.09002 * 109.46463 * 301.75962 * 20 10 9 42 42 H 1.09003 * 109.50607 * 57.46356 * 21 5 4 43 43 H 1.09000 * 109.51247 * 177.59803 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3341 -0.1480 5 6 4.1187 0.5351 1.0108 6 6 3.5184 -0.8725 1.0199 7 6 1.9953 -0.7713 1.1333 8 6 5.6363 0.4440 0.8376 9 6 6.2360 1.8512 0.8894 10 7 5.9065 2.4781 2.1759 11 6 6.5817 3.7750 2.3178 12 6 6.0548 4.7319 1.2796 13 1 5.3545 4.3870 0.5333 14 6 6.4667 6.0477 1.2827 15 7 7.3198 6.4676 2.1912 16 14 5.8141 7.2337 -0.0045 17 1 4.8752 6.5184 -0.9059 18 1 5.1010 8.3499 0.6670 19 1 6.9464 7.7757 -0.7977 20 6 4.4543 2.6199 2.3415 21 6 3.8014 1.2356 2.3339 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.7332 1.8605 0.9380 26 1 1.5627 1.9260 -0.8325 27 1 3.9103 2.3510 -0.1307 28 1 3.7811 0.8586 -1.0929 29 1 3.7811 -1.3862 0.0952 30 1 3.9104 -1.4298 1.8707 31 1 1.7330 -0.2716 2.0658 32 1 1.5631 -1.7719 1.1235 33 1 5.8660 -0.0143 -0.1243 34 1 6.0590 -0.1615 1.6394 35 1 5.8253 2.4512 0.0773 36 1 7.3190 1.7885 0.7828 37 1 7.6548 3.6431 2.1790 38 1 6.3908 4.1771 3.3128 39 1 7.6093 7.3934 2.1937 40 1 4.2436 3.1157 3.2890 41 1 4.0518 3.2158 1.5224 42 1 2.7217 1.3419 2.4396 43 1 4.1924 0.6442 3.1618 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260990836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:03 Heat of formation + Delta-G solvation = -6.187783 kcal Electronic energy + Delta-G solvation = -20204.868906 eV Core-core repulsion = 17476.986280 eV Total energy + Delta-G solvation = -2727.882626 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.18405 -37.19607 -34.30917 -32.31587 -30.79156 -30.30230 -29.23922 -26.52737 -24.93313 -23.50001 -22.69325 -22.53334 -21.22999 -19.72841 -17.67167 -16.40444 -15.72920 -15.15291 -15.09911 -14.56171 -14.14848 -14.06225 -13.97553 -13.81980 -13.35465 -12.77150 -12.37094 -12.32449 -12.09785 -11.72952 -11.60635 -11.33998 -11.24265 -11.03792 -10.99587 -10.89183 -10.58299 -10.50292 -10.24102 -10.03515 -9.86865 -9.62077 -9.58653 -9.31880 -8.42507 -8.24379 -7.06953 -6.01095 -4.10541 3.25868 3.34232 3.37167 3.96870 4.40729 4.84312 4.90798 4.99900 5.12469 5.21843 5.28833 5.36715 5.39722 5.44395 5.57887 5.66966 5.70694 5.75986 5.82857 5.86961 5.92756 6.05181 6.06087 6.14147 6.19308 6.24854 6.37291 6.50210 6.53799 6.57961 6.66030 6.80243 6.85033 6.98935 7.11198 7.14103 7.35046 7.54921 7.91757 8.12761 8.33079 8.39062 9.00842 9.56269 11.03409 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.027037 B = 0.006275 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.354682 B = 4460.769302 C = 5050.069386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.055 3.945 4 C -0.110 4.110 5 C -0.055 4.055 6 C -0.104 4.104 7 C 0.055 3.945 8 C -0.103 4.103 9 C 0.062 3.938 10 N -0.540 5.540 11 C 0.186 3.814 12 C -0.546 4.546 13 H 0.057 0.943 14 C 0.064 3.936 15 N -0.891 5.891 16 Si 0.886 3.114 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.065 3.935 21 C -0.108 4.108 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.022 0.978 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.038 0.962 36 H 0.061 0.939 37 H 0.026 0.974 38 H 0.033 0.967 39 H 0.261 0.739 40 H 0.060 0.940 41 H 0.040 0.960 42 H 0.053 0.947 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.347 -13.265 -2.865 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.072 4.072 4 C -0.148 4.148 5 C -0.055 4.055 6 C -0.142 4.142 7 C -0.072 4.072 8 C -0.141 4.141 9 C -0.066 4.066 10 N -0.265 5.265 11 C 0.060 3.940 12 C -0.585 4.585 13 H 0.075 0.925 14 C -0.138 4.138 15 N -0.530 5.530 16 Si 0.714 3.286 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.063 4.063 21 C -0.145 4.145 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.915 -13.640 -2.852 17.102 hybrid contribution -0.910 1.835 -0.604 2.135 sum -10.825 -11.805 -3.456 16.385 Atomic orbital electron populations 1.22332 0.87917 1.01591 1.00478 1.61947 1.06984 1.14386 1.43497 1.22139 0.96242 0.88422 1.00426 1.21732 0.93403 1.01384 0.98245 1.20504 0.95424 0.94223 0.95328 1.21626 0.93696 0.96958 1.01880 1.22113 0.96065 0.97494 0.91576 1.21639 0.93832 0.97991 1.00669 1.21879 0.99356 0.93164 0.92250 1.62419 1.07469 1.26025 1.30552 1.19746 0.94082 0.83273 0.96874 1.21791 1.26925 0.95109 1.14663 0.92525 1.24960 0.94935 0.98265 0.95642 1.69950 1.32319 1.16491 1.34238 0.86633 0.78864 0.81257 0.81835 1.19851 1.20989 1.20940 1.21842 0.89459 0.94284 1.00728 1.21757 0.98857 0.97446 0.96475 0.91591 0.91720 0.95908 0.94421 0.91283 0.90341 0.91673 0.91497 0.91701 0.94666 0.91433 0.92598 0.91899 0.94366 0.92066 0.95566 0.94905 0.92909 0.92179 0.94188 0.92831 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.59 60.06 0.58 0.83 16 2 N -0.54 -6.73 4.91 -242.94 -1.19 -7.92 16 3 C 0.06 0.75 5.22 -3.83 -0.02 0.73 16 4 C -0.11 -1.64 4.29 -26.69 -0.11 -1.76 16 5 C -0.05 -0.79 0.51 -154.45 -0.08 -0.87 16 6 C -0.10 -1.28 4.89 -26.69 -0.13 -1.41 16 7 C 0.06 0.65 5.22 -3.82 -0.02 0.63 16 8 C -0.10 -1.60 4.89 -26.70 -0.13 -1.74 16 9 C 0.06 1.20 4.87 -3.82 -0.02 1.18 16 10 N -0.54 -11.63 4.86 -236.08 -1.15 -12.78 16 11 C 0.19 4.82 5.12 -4.97 -0.03 4.80 16 12 C -0.55 -14.94 7.72 -34.44 -0.27 -15.21 16 13 H 0.06 1.54 5.86 -52.49 -0.31 1.23 16 14 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 16 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 C 0.07 1.28 4.78 -3.82 -0.02 1.26 16 21 C -0.11 -1.69 4.29 -26.68 -0.11 -1.80 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 24 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.04 0.54 6.47 -51.93 -0.34 0.20 16 26 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 27 H 0.08 1.36 4.95 -51.93 -0.26 1.11 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.43 6.58 -51.93 -0.34 0.09 16 32 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.04 0.80 5.30 -51.93 -0.28 0.52 16 36 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 37 H 0.03 0.73 8.08 -51.93 -0.42 0.31 16 38 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.06 1.23 8.12 -51.93 -0.42 0.80 16 41 H 0.04 0.85 5.05 -51.93 -0.26 0.58 16 42 H 0.05 0.79 4.95 -51.93 -0.26 0.53 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 310.10 15.07 4.67 4.67 Total: -1.00 -28.60 310.10 -9.91 -38.51 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -7.50 Total: -1.70 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -0.46 Total: -11.63 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -1.60 Total: -46.27 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.60 -9.91 -38.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.319 kcal (2) G-P(sol) polarization free energy of solvation -28.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds