Wall clock time and date at job start Mon Mar 30 2020 03:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46849 * 110.99940 * 2 1 4 4 C 1.53051 * 109.51693 * 185.88871 * 3 2 1 5 5 C 1.53035 * 109.25904 * 300.90468 * 4 3 2 6 6 C 1.53024 * 109.31564 * 57.56019 * 5 4 3 7 7 C 1.46843 * 111.00422 * 124.23955 * 2 1 3 8 8 C 1.53016 * 109.54693 * 177.63922 * 5 4 3 9 9 C 1.53051 * 109.27476 * 62.47443 * 8 5 4 10 10 N 1.46851 * 109.52517 * 59.06152 * 9 8 5 11 11 C 1.46901 * 111.00189 * 174.13604 * 10 9 8 12 12 C 1.50701 * 109.47027 * 64.89797 * 11 10 9 13 13 H 1.07999 * 120.00016 * 354.99434 * 12 11 10 14 14 C 1.37878 * 119.99920 * 174.99354 * 12 11 10 15 15 N 1.31509 * 120.00150 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99909 * 179.97438 * 14 12 11 17 17 H 1.48513 * 109.47274 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47353 * 119.99903 * 16 14 12 19 19 H 1.48500 * 109.47629 * 240.00138 * 16 14 12 20 20 C 1.46849 * 111.21648 * 298.25030 * 10 9 8 21 21 C 1.53034 * 109.53001 * 297.52739 * 5 4 3 22 22 H 1.08997 * 109.47322 * 59.99969 * 1 2 3 23 23 H 1.09002 * 109.46686 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47021 * 299.99420 * 1 2 3 25 25 H 1.09000 * 109.45985 * 65.87492 * 3 2 1 26 26 H 1.09003 * 109.46255 * 305.90500 * 3 2 1 27 27 H 1.09000 * 109.51086 * 180.96984 * 4 3 2 28 28 H 1.09001 * 109.53770 * 60.85939 * 4 3 2 29 29 H 1.08994 * 109.50653 * 62.39741 * 6 5 4 30 30 H 1.09005 * 109.50191 * 182.52413 * 6 5 4 31 31 H 1.09001 * 109.46064 * 294.14977 * 7 2 1 32 32 H 1.08998 * 109.46087 * 54.11603 * 7 2 1 33 33 H 1.09002 * 109.50778 * 302.53619 * 8 5 4 34 34 H 1.09002 * 109.53801 * 182.43422 * 8 5 4 35 35 H 1.09002 * 109.46611 * 299.04731 * 9 8 5 36 36 H 1.09001 * 109.45789 * 179.07163 * 9 8 5 37 37 H 1.09005 * 109.47266 * 304.89448 * 11 10 9 38 38 H 1.09003 * 109.47094 * 184.89640 * 11 10 9 39 39 H 0.97000 * 120.00449 * 180.02562 * 15 14 12 40 40 H 1.08999 * 109.46208 * 181.78051 * 20 10 9 41 41 H 1.09002 * 109.46463 * 301.75962 * 20 10 9 42 42 H 1.09003 * 109.50607 * 57.46356 * 21 5 4 43 43 H 1.09000 * 109.51247 * 177.59803 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3341 -0.1480 5 6 4.1187 0.5351 1.0108 6 6 3.5184 -0.8725 1.0199 7 6 1.9953 -0.7713 1.1333 8 6 5.6363 0.4440 0.8376 9 6 6.2360 1.8512 0.8894 10 7 5.9065 2.4781 2.1759 11 6 6.5817 3.7750 2.3178 12 6 6.0548 4.7319 1.2796 13 1 5.3545 4.3870 0.5333 14 6 6.4667 6.0477 1.2827 15 7 7.3198 6.4676 2.1912 16 14 5.8141 7.2337 -0.0045 17 1 4.8752 6.5184 -0.9059 18 1 5.1010 8.3499 0.6670 19 1 6.9464 7.7757 -0.7977 20 6 4.4543 2.6199 2.3415 21 6 3.8014 1.2356 2.3339 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.7332 1.8605 0.9380 26 1 1.5627 1.9260 -0.8325 27 1 3.9103 2.3510 -0.1307 28 1 3.7811 0.8586 -1.0929 29 1 3.7811 -1.3862 0.0952 30 1 3.9104 -1.4298 1.8707 31 1 1.7330 -0.2716 2.0658 32 1 1.5631 -1.7719 1.1235 33 1 5.8660 -0.0143 -0.1243 34 1 6.0590 -0.1615 1.6394 35 1 5.8253 2.4512 0.0773 36 1 7.3190 1.7885 0.7828 37 1 7.6548 3.6431 2.1790 38 1 6.3908 4.1771 3.3128 39 1 7.6093 7.3934 2.1937 40 1 4.2436 3.1157 3.2890 41 1 4.0518 3.2158 1.5224 42 1 2.7217 1.3419 2.4396 43 1 4.1924 0.6442 3.1618 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260990836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:03 Heat of formation + Delta-G solvation = -25.158280 kcal Electronic energy + Delta-G solvation = -20205.691529 eV Core-core repulsion = 17476.986280 eV Total energy + Delta-G solvation = -2728.705249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.42162 -38.56533 -35.82119 -34.26689 -31.86122 -31.73095 -30.66912 -28.20304 -26.33046 -24.83609 -24.09130 -23.89341 -22.67822 -21.14122 -19.14066 -18.22701 -17.11488 -16.73739 -16.17648 -15.99546 -15.59857 -15.38293 -15.19067 -15.15199 -14.93781 -14.40660 -13.70173 -13.44142 -13.33633 -13.26880 -13.03930 -12.89397 -12.73355 -12.51151 -12.36203 -12.23476 -12.07312 -11.97599 -11.92298 -11.75617 -11.63921 -10.97360 -10.93794 -10.77238 -10.62594 -9.19278 -8.94650 -8.15480 -6.36370 1.33286 1.34612 1.46132 2.35069 3.04808 3.07769 3.40276 3.77281 3.82336 3.85742 4.22509 4.25730 4.36133 4.43043 4.46289 4.51018 4.62600 4.64419 4.67959 4.73115 4.80018 4.81154 4.89069 5.00427 5.01961 5.03503 5.08741 5.14150 5.20555 5.26609 5.29944 5.32219 5.36134 5.37250 5.54405 5.58436 5.73645 6.06069 6.15151 6.21540 6.29814 6.61404 6.85941 7.35255 8.85972 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.027037 B = 0.006275 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.354682 B = 4460.769302 C = 5050.069386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.550 5.550 3 C 0.060 3.940 4 C -0.106 4.106 5 C -0.052 4.052 6 C -0.096 4.096 7 C 0.055 3.945 8 C -0.094 4.094 9 C 0.063 3.937 10 N -0.540 5.540 11 C 0.198 3.802 12 C -0.552 4.552 13 H 0.056 0.944 14 C 0.011 3.989 15 N -0.927 5.927 16 Si 0.955 3.045 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.277 1.277 20 C 0.068 3.932 21 C -0.095 4.095 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.022 0.978 25 H 0.028 0.972 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.020 0.980 36 H 0.050 0.950 37 H 0.001 0.999 38 H 0.003 0.997 39 H 0.265 0.735 40 H 0.044 0.956 41 H 0.022 0.978 42 H 0.067 0.933 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.054 -15.011 -3.926 19.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.275 5.275 3 C -0.068 4.068 4 C -0.144 4.144 5 C -0.052 4.052 6 C -0.134 4.134 7 C -0.073 4.073 8 C -0.132 4.132 9 C -0.066 4.066 10 N -0.263 5.263 11 C 0.072 3.928 12 C -0.591 4.591 13 H 0.074 0.926 14 C -0.188 4.188 15 N -0.567 5.567 16 Si 0.780 3.220 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.060 4.060 21 C -0.132 4.132 22 H 0.088 0.912 23 H 0.100 0.900 24 H 0.041 0.959 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.019 0.981 38 H 0.021 0.979 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.040 0.960 42 H 0.085 0.915 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.636 -15.408 -3.917 19.701 hybrid contribution -0.366 2.365 -0.255 2.407 sum -12.001 -13.043 -4.171 18.208 Atomic orbital electron populations 1.22398 0.86458 1.02794 1.00704 1.61961 1.08354 1.13247 1.43921 1.22023 0.95202 0.89504 1.00034 1.21634 0.94512 0.99561 0.98651 1.20492 0.94726 0.95816 0.94172 1.21565 0.94101 0.94880 1.02854 1.22169 0.95584 0.98430 0.91112 1.21583 0.94420 0.95027 1.02127 1.21925 0.99018 0.95288 0.90325 1.62372 1.08500 1.23430 1.32047 1.19409 0.93038 0.85371 0.95026 1.21986 1.26688 0.95658 1.14724 0.92613 1.25814 0.95133 1.00131 0.97732 1.70071 1.33540 1.17118 1.35989 0.85550 0.78406 0.78842 0.79176 1.19135 1.20324 1.20257 1.21846 0.88273 0.96823 0.99075 1.21657 0.99176 0.94768 0.97647 0.91177 0.90026 0.95916 0.95417 0.91058 0.93542 0.91286 0.90879 0.90319 0.95019 0.89325 0.90565 0.91118 0.96154 0.93096 0.98094 0.97854 0.92623 0.93763 0.96021 0.91461 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.59 127.69 1.22 1.65 16 2 N -0.55 -12.01 4.91 -922.53 -4.53 -16.54 16 3 C 0.06 1.54 5.22 86.33 0.45 1.99 16 4 C -0.11 -3.04 4.29 30.62 0.13 -2.91 16 5 C -0.05 -1.39 0.51 -52.15 -0.03 -1.42 16 6 C -0.10 -2.02 4.89 30.62 0.15 -1.87 16 7 C 0.05 1.08 5.22 86.33 0.45 1.53 16 8 C -0.09 -2.75 4.89 30.62 0.15 -2.60 16 9 C 0.06 2.46 4.87 86.33 0.42 2.88 16 10 N -0.54 -23.89 4.86 -900.81 -4.37 -28.27 16 11 C 0.20 10.80 5.12 85.56 0.44 11.24 16 12 C -0.55 -31.16 7.72 25.60 0.20 -30.96 16 13 H 0.06 3.11 5.86 -2.91 -0.02 3.09 16 14 C 0.01 0.63 5.46 84.66 0.46 1.10 16 15 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 16 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 20 C 0.07 2.73 4.78 86.33 0.41 3.14 16 21 C -0.09 -2.86 4.29 30.63 0.13 -2.73 16 22 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 24 H 0.02 0.39 8.14 -2.39 -0.02 0.38 16 25 H 0.03 0.76 6.47 -2.39 -0.02 0.74 16 26 H 0.07 1.76 8.12 -2.39 -0.02 1.74 16 27 H 0.05 1.63 4.95 -2.39 -0.01 1.62 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.03 0.66 6.58 -2.39 -0.02 0.64 16 32 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.02 0.87 5.30 -2.39 -0.01 0.86 16 36 H 0.05 2.06 8.08 -2.39 -0.02 2.04 16 37 H 0.00 0.05 8.08 -2.38 -0.02 0.03 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 40 H 0.04 1.87 8.12 -2.39 -0.02 1.85 16 41 H 0.02 0.95 5.05 -2.39 -0.01 0.93 16 42 H 0.07 1.87 4.95 -2.39 -0.01 1.86 16 43 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -62.52 310.10 -1.04 -63.55 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.96 Total: 9.51 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 4.59 Total: -18.97 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -8.62 Total: -100.65 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -62.52 -1.04 -63.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.396 kcal (2) G-P(sol) polarization free energy of solvation -62.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds