Wall clock time and date at job start Mon Mar 30 2020 03:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47959 * 111.00089 * 2 1 4 4 C 1.53930 * 86.30334 * 222.47675 * 3 2 1 5 5 C 1.52997 * 113.73630 * 138.02554 * 4 3 2 6 6 N 1.46896 * 109.47459 * 175.00120 * 5 4 3 7 7 C 1.48561 * 110.99980 * 279.97649 * 6 5 4 8 8 C 1.54379 * 104.59683 * 200.95853 * 7 6 5 9 9 C 1.54262 * 105.06013 * 23.85400 * 8 7 6 10 10 C 1.48564 * 111.00145 * 164.56204 * 6 5 4 11 11 H 1.08993 * 110.40880 * 40.26019 * 10 6 5 12 12 C 1.52997 * 110.40835 * 277.93284 * 10 6 5 13 13 C 1.53001 * 109.47058 * 174.57566 * 12 10 6 14 14 C 1.50706 * 109.47191 * 185.04273 * 13 12 10 15 15 H 1.07996 * 119.99829 * 359.97438 * 14 13 12 16 16 C 1.37868 * 119.99917 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00073 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00286 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46921 * 89.99902 * 18 16 14 20 20 H 1.48494 * 109.47377 * 209.99963 * 18 16 14 21 21 H 1.48496 * 109.47085 * 330.00292 * 18 16 14 22 22 C 1.48185 * 111.07049 * 260.71417 * 2 1 3 23 23 H 1.09001 * 109.47169 * 59.99256 * 1 2 3 24 24 H 1.08994 * 109.47424 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46654 * 299.99640 * 1 2 3 26 26 H 1.09000 * 113.75425 * 108.10308 * 3 2 1 27 27 H 1.09001 * 113.75824 * 336.85158 * 3 2 1 28 28 H 1.09001 * 113.73429 * 269.31134 * 4 3 2 29 29 H 1.08998 * 109.47341 * 295.00461 * 5 4 3 30 30 H 1.09000 * 109.47074 * 54.99887 * 5 4 3 31 31 H 1.08998 * 110.41400 * 319.74062 * 7 6 5 32 32 H 1.09003 * 110.40753 * 82.17889 * 7 6 5 33 33 H 1.08996 * 110.32265 * 264.95740 * 8 7 6 34 34 H 1.08999 * 110.41075 * 142.79649 * 8 7 6 35 35 H 1.08992 * 110.32368 * 241.10704 * 9 8 7 36 36 H 1.09000 * 110.32424 * 118.89362 * 9 8 7 37 37 H 1.08997 * 109.47741 * 294.57694 * 12 10 6 38 38 H 1.09007 * 109.47202 * 54.57871 * 12 10 6 39 39 H 1.09005 * 109.46843 * 305.03969 * 13 12 10 40 40 H 1.08990 * 109.47321 * 65.04134 * 13 12 10 41 41 H 0.96999 * 120.00306 * 180.02562 * 17 16 14 42 42 H 1.09003 * 113.66221 * 23.13382 * 22 2 1 43 43 H 1.09004 * 113.92374 * 251.82342 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0214 0.8826 -1.0373 5 6 3.2584 1.8621 -2.1885 6 7 4.3301 1.3511 -3.0535 7 6 5.6665 1.6363 -2.4705 8 6 6.6383 1.5554 -3.6673 9 6 5.7678 1.8334 -4.9101 10 6 4.3432 2.0589 -4.3596 11 1 4.1547 3.1229 -4.2172 12 6 3.3019 1.4552 -5.3041 13 6 3.2387 2.2826 -6.5895 14 6 2.1287 1.7637 -7.4669 15 1 1.5287 0.9272 -7.1406 16 6 1.8799 2.3563 -8.6866 17 7 0.9110 1.9038 -9.4521 18 14 2.9182 3.8028 -9.2515 19 1 4.0909 3.3029 -10.0132 20 1 2.1029 4.6874 -10.1221 21 1 3.3864 4.5680 -8.0681 22 6 2.0018 -0.2231 -1.3647 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 2.4461 1.6801 0.9483 27 1 1.3003 2.1200 -0.3922 28 1 3.9466 0.5100 -0.5976 29 1 2.3423 1.9686 -2.7694 30 1 3.5482 2.8327 -1.7859 31 1 5.6850 2.6342 -2.0325 32 1 5.9223 0.8867 -1.7216 33 1 7.0804 0.5610 -3.7294 34 1 7.4187 2.3108 -3.5750 35 1 5.7825 0.9754 -5.5821 36 1 6.1197 2.7263 -5.4268 37 1 3.5814 0.4297 -5.5455 38 1 2.3253 1.4611 -4.8198 39 1 3.0472 3.3265 -6.3406 40 1 4.1878 2.2037 -7.1194 41 1 0.7362 2.3204 -10.3105 42 1 1.3023 0.0448 -2.1566 43 1 2.4507 -1.2059 -1.5087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260992919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:31 Heat of formation + Delta-G solvation = 25.511519 kcal Electronic energy + Delta-G solvation = -19118.580520 eV Core-core repulsion = 16392.072479 eV Total energy + Delta-G solvation = -2726.508042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.11266 -38.65849 -33.88802 -32.79068 -31.66905 -30.04966 -28.10590 -26.16072 -26.02129 -24.45597 -22.36323 -21.19324 -20.54906 -19.65865 -19.13665 -16.74922 -16.29698 -15.64303 -15.36826 -14.99306 -14.71236 -14.27463 -13.96568 -13.74205 -13.25317 -12.91288 -12.70543 -12.60335 -12.30643 -12.20833 -11.56396 -11.42653 -11.40267 -11.14851 -11.02095 -10.96988 -10.68929 -10.54689 -10.43802 -10.28100 -9.87322 -9.69227 -9.50992 -9.14042 -8.90568 -8.52112 -8.25718 -6.02647 -4.00144 3.30727 3.38074 3.41473 3.89847 3.99257 4.46171 4.53724 4.72380 4.84931 4.99137 5.03828 5.18391 5.23838 5.31371 5.36199 5.42800 5.45376 5.48722 5.54012 5.58329 5.67548 5.73944 5.77795 5.84069 5.88090 5.93529 6.01279 6.20062 6.20639 6.25927 6.32484 6.44779 6.56136 6.59557 6.94346 6.95669 7.14330 7.26889 7.37707 7.49427 7.82333 8.56926 9.03197 9.60260 11.11018 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019228 B = 0.005376 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.864992 B = 5207.423466 C = 6330.694762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.490 5.490 3 C 0.002 3.998 4 C -0.101 4.101 5 C 0.051 3.949 6 N -0.504 5.504 7 C 0.033 3.967 8 C -0.125 4.125 9 C -0.118 4.118 10 C 0.062 3.938 11 H 0.045 0.955 12 C -0.084 4.084 13 C -0.012 4.012 14 C -0.517 4.517 15 H 0.071 0.929 16 C 0.066 3.934 17 N -0.905 5.905 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.266 1.266 22 C 0.014 3.986 23 H 0.036 0.964 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.011 0.989 40 H 0.012 0.988 41 H 0.262 0.738 42 H 0.074 0.926 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.796 0.234 17.839 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.212 5.212 3 C -0.128 4.128 4 C -0.120 4.120 5 C -0.078 4.078 6 N -0.227 5.227 7 C -0.095 4.095 8 C -0.163 4.163 9 C -0.156 4.156 10 C -0.046 4.046 11 H 0.063 0.937 12 C -0.122 4.122 13 C -0.050 4.050 14 C -0.555 4.555 15 H 0.089 0.911 16 C -0.135 4.135 17 N -0.544 5.544 18 Si 0.706 3.294 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.114 4.114 23 H 0.055 0.945 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.029 0.971 40 H 0.030 0.970 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.736 -0.770 18.155 19.379 hybrid contribution 0.112 2.218 -0.944 2.413 sum 6.848 1.448 17.211 18.580 Atomic orbital electron populations 1.22854 0.89853 1.02366 1.00970 1.68505 1.08953 1.18278 1.25512 1.23992 0.97270 0.91706 0.99793 1.22870 0.98200 0.96075 0.94900 1.22312 0.96345 0.95285 0.93869 1.65328 1.01433 1.53134 1.02837 1.23115 0.90149 0.99149 0.97115 1.22297 0.97459 1.01697 0.94814 1.22338 0.93936 1.02219 0.97134 1.22855 0.96501 0.95838 0.89386 0.93651 1.21393 0.96075 0.99740 0.94962 1.19572 0.97015 0.95306 0.93131 1.21155 1.15506 1.17102 1.01770 0.91083 1.25029 0.95018 0.96939 0.96526 1.69919 1.30980 1.41939 1.11603 0.86791 0.80552 0.83174 0.78840 1.20274 1.21467 1.19114 1.24036 0.96666 1.00528 0.90159 0.94486 0.91232 0.91693 0.89717 0.91283 0.88458 0.90369 0.94502 0.94393 0.90645 0.91305 0.91947 0.90534 0.91705 0.92125 0.92967 0.97060 0.96968 0.92807 0.90828 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 9.65 60.07 0.58 0.46 16 2 N -0.49 -5.74 6.56 -245.64 -1.61 -7.35 16 3 C 0.00 0.02 7.55 -2.77 -0.02 0.00 16 4 C -0.10 -1.15 4.01 -89.68 -0.36 -1.51 16 5 C 0.05 0.65 4.67 -3.83 -0.02 0.63 16 6 N -0.50 -7.14 4.99 -222.15 -1.11 -8.25 16 7 C 0.03 0.39 6.14 -2.18 -0.01 0.38 16 8 C -0.12 -1.50 7.00 -25.35 -0.18 -1.67 16 9 C -0.12 -1.75 5.96 -25.35 -0.15 -1.90 16 10 C 0.06 1.01 2.24 -66.07 -0.15 0.86 16 11 H 0.05 0.76 8.00 -51.93 -0.42 0.35 16 12 C -0.08 -1.67 4.80 -26.73 -0.13 -1.80 16 13 C -0.01 -0.29 3.86 -27.88 -0.11 -0.40 16 14 C -0.52 -14.84 9.66 -34.44 -0.33 -15.18 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.14 13.96 55.43 0.77 -27.37 16 18 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 22 C 0.01 0.18 7.54 -2.64 -0.02 0.16 16 23 H 0.04 0.39 7.62 -51.93 -0.40 -0.01 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.70 7.88 -51.93 -0.41 0.29 16 28 H 0.10 1.12 7.62 -51.93 -0.40 0.72 16 29 H 0.08 1.11 6.71 -51.93 -0.35 0.76 16 30 H 0.04 0.45 7.64 -51.93 -0.40 0.05 16 31 H 0.04 0.44 7.68 -51.93 -0.40 0.04 16 32 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.21 7.74 -51.93 -0.40 0.80 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.25 7.96 -51.93 -0.41 0.83 16 38 H 0.05 1.06 7.17 -51.93 -0.37 0.69 16 39 H 0.01 0.27 7.20 -51.93 -0.37 -0.11 16 40 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 42 H 0.07 0.96 7.37 -51.93 -0.38 0.57 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -30.34 331.20 -10.65 -40.99 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -8.03 Total: -2.04 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -1.00 Total: -18.14 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: -1.95 Total: -42.97 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.34 -10.65 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.503 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds