Wall clock time and date at job start Mon Mar 30 2020 03:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47959 * 111.00089 * 2 1 4 4 C 1.53930 * 86.30334 * 222.47675 * 3 2 1 5 5 C 1.52997 * 113.73630 * 138.02554 * 4 3 2 6 6 N 1.46896 * 109.47459 * 175.00120 * 5 4 3 7 7 C 1.48561 * 110.99980 * 279.97649 * 6 5 4 8 8 C 1.54379 * 104.59683 * 200.95853 * 7 6 5 9 9 C 1.54262 * 105.06013 * 23.85400 * 8 7 6 10 10 C 1.48564 * 111.00145 * 164.56204 * 6 5 4 11 11 H 1.08993 * 110.40880 * 40.26019 * 10 6 5 12 12 C 1.52997 * 110.40835 * 277.93284 * 10 6 5 13 13 C 1.53001 * 109.47058 * 174.57566 * 12 10 6 14 14 C 1.50706 * 109.47191 * 185.04273 * 13 12 10 15 15 H 1.07996 * 119.99829 * 359.97438 * 14 13 12 16 16 C 1.37868 * 119.99917 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00073 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00286 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46921 * 89.99902 * 18 16 14 20 20 H 1.48494 * 109.47377 * 209.99963 * 18 16 14 21 21 H 1.48496 * 109.47085 * 330.00292 * 18 16 14 22 22 C 1.48185 * 111.07049 * 260.71417 * 2 1 3 23 23 H 1.09001 * 109.47169 * 59.99256 * 1 2 3 24 24 H 1.08994 * 109.47424 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46654 * 299.99640 * 1 2 3 26 26 H 1.09000 * 113.75425 * 108.10308 * 3 2 1 27 27 H 1.09001 * 113.75824 * 336.85158 * 3 2 1 28 28 H 1.09001 * 113.73429 * 269.31134 * 4 3 2 29 29 H 1.08998 * 109.47341 * 295.00461 * 5 4 3 30 30 H 1.09000 * 109.47074 * 54.99887 * 5 4 3 31 31 H 1.08998 * 110.41400 * 319.74062 * 7 6 5 32 32 H 1.09003 * 110.40753 * 82.17889 * 7 6 5 33 33 H 1.08996 * 110.32265 * 264.95740 * 8 7 6 34 34 H 1.08999 * 110.41075 * 142.79649 * 8 7 6 35 35 H 1.08992 * 110.32368 * 241.10704 * 9 8 7 36 36 H 1.09000 * 110.32424 * 118.89362 * 9 8 7 37 37 H 1.08997 * 109.47741 * 294.57694 * 12 10 6 38 38 H 1.09007 * 109.47202 * 54.57871 * 12 10 6 39 39 H 1.09005 * 109.46843 * 305.03969 * 13 12 10 40 40 H 1.08990 * 109.47321 * 65.04134 * 13 12 10 41 41 H 0.96999 * 120.00306 * 180.02562 * 17 16 14 42 42 H 1.09003 * 113.66221 * 23.13382 * 22 2 1 43 43 H 1.09004 * 113.92374 * 251.82342 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0214 0.8826 -1.0373 5 6 3.2584 1.8621 -2.1885 6 7 4.3301 1.3511 -3.0535 7 6 5.6665 1.6363 -2.4705 8 6 6.6383 1.5554 -3.6673 9 6 5.7678 1.8334 -4.9101 10 6 4.3432 2.0589 -4.3596 11 1 4.1547 3.1229 -4.2172 12 6 3.3019 1.4552 -5.3041 13 6 3.2387 2.2826 -6.5895 14 6 2.1287 1.7637 -7.4669 15 1 1.5287 0.9272 -7.1406 16 6 1.8799 2.3563 -8.6866 17 7 0.9110 1.9038 -9.4521 18 14 2.9182 3.8028 -9.2515 19 1 4.0909 3.3029 -10.0132 20 1 2.1029 4.6874 -10.1221 21 1 3.3864 4.5680 -8.0681 22 6 2.0018 -0.2231 -1.3647 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 2.4461 1.6801 0.9483 27 1 1.3003 2.1200 -0.3922 28 1 3.9466 0.5100 -0.5976 29 1 2.3423 1.9686 -2.7694 30 1 3.5482 2.8327 -1.7859 31 1 5.6850 2.6342 -2.0325 32 1 5.9223 0.8867 -1.7216 33 1 7.0804 0.5610 -3.7294 34 1 7.4187 2.3108 -3.5750 35 1 5.7825 0.9754 -5.5821 36 1 6.1197 2.7263 -5.4268 37 1 3.5814 0.4297 -5.5455 38 1 2.3253 1.4611 -4.8198 39 1 3.0472 3.3265 -6.3406 40 1 4.1878 2.2037 -7.1194 41 1 0.7362 2.3204 -10.3105 42 1 1.3023 0.0448 -2.1566 43 1 2.4507 -1.2059 -1.5087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260992919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:31 Heat of formation + Delta-G solvation = 4.185806 kcal Electronic energy + Delta-G solvation = -19119.505273 eV Core-core repulsion = 16392.072479 eV Total energy + Delta-G solvation = -2727.432794 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.07249 -39.76561 -35.76296 -34.00860 -33.45186 -31.00698 -29.72415 -27.11295 -26.97076 -26.12650 -23.36221 -22.81941 -21.66189 -20.92536 -20.24593 -18.90604 -17.32776 -16.59678 -16.47906 -16.30212 -16.01869 -15.63909 -15.27529 -15.05133 -14.70740 -14.36040 -13.85458 -13.76074 -13.63975 -13.45245 -13.15749 -12.81617 -12.55475 -12.34738 -12.24659 -12.12382 -12.01194 -11.75565 -11.64792 -11.47970 -11.36458 -11.35599 -11.31103 -11.08628 -10.76066 -9.82890 -9.34615 -8.29673 -6.33888 1.34977 1.36922 1.48970 2.35837 2.93682 3.00581 3.05681 3.57953 3.69202 3.79323 4.00437 4.13690 4.19893 4.30004 4.33455 4.44698 4.48647 4.53720 4.55814 4.57688 4.62887 4.69121 4.73641 4.81644 4.83402 4.90132 4.94302 4.97123 5.04137 5.08516 5.12992 5.29677 5.32880 5.34855 5.38737 5.51219 5.61576 5.66456 6.02907 6.05884 6.19072 6.30117 6.74310 7.30732 8.87537 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019228 B = 0.005376 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.864992 B = 5207.423466 C = 6330.694762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.499 5.499 3 C 0.008 3.992 4 C -0.091 4.091 5 C 0.054 3.946 6 N -0.516 5.516 7 C 0.034 3.966 8 C -0.117 4.117 9 C -0.122 4.122 10 C 0.068 3.932 11 H 0.045 0.955 12 C -0.073 4.073 13 C -0.005 4.005 14 C -0.532 4.532 15 H 0.026 0.974 16 C 0.003 3.997 17 N -0.954 5.954 18 Si 0.952 3.048 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.246 1.246 22 C 0.009 3.991 23 H 0.030 0.970 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.015 0.985 40 H 0.021 0.979 41 H 0.266 0.734 42 H 0.058 0.942 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.105 1.865 19.447 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.222 5.222 3 C -0.121 4.121 4 C -0.111 4.111 5 C -0.075 4.075 6 N -0.239 5.239 7 C -0.093 4.093 8 C -0.155 4.155 9 C -0.160 4.160 10 C -0.040 4.040 11 H 0.063 0.937 12 C -0.111 4.111 13 C -0.043 4.043 14 C -0.570 4.570 15 H 0.045 0.955 16 C -0.193 4.193 17 N -0.595 5.595 18 Si 0.775 3.225 19 H -0.189 1.189 20 H -0.210 1.210 21 H -0.169 1.169 22 C -0.119 4.119 23 H 0.049 0.951 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.034 0.966 40 H 0.040 0.960 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.052 0.852 19.791 21.780 hybrid contribution -0.708 1.603 -1.424 2.258 sum 8.344 2.455 18.368 20.323 Atomic orbital electron populations 1.22880 0.89173 1.02670 1.01360 1.68501 1.09752 1.19239 1.24682 1.24020 0.96758 0.91115 1.00207 1.22797 0.98391 0.95292 0.94588 1.22281 0.95111 0.96317 0.93762 1.65263 1.03111 1.53196 1.02376 1.23196 0.88443 1.00333 0.97345 1.22287 0.97400 1.02807 0.93021 1.22345 0.93475 1.01862 0.98311 1.22623 0.96063 0.95411 0.89948 0.93708 1.21186 0.96926 0.98649 0.94380 1.19477 0.95265 0.95665 0.93913 1.21508 1.16486 1.16083 1.02949 0.95516 1.26047 0.96399 1.00368 0.96522 1.70081 1.33113 1.43941 1.12317 0.85630 0.78783 0.79063 0.79022 1.18907 1.20985 1.16921 1.23987 0.96988 1.00644 0.90308 0.95107 0.91073 0.90238 0.88028 0.91064 0.87803 0.92532 0.93202 0.93203 0.89148 0.90736 0.89774 0.92051 0.91151 0.93521 0.94464 0.96634 0.96027 0.92519 0.92383 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.24 9.65 127.69 1.23 1.00 16 2 N -0.50 -11.17 6.56 -931.07 -6.11 -17.28 16 3 C 0.01 0.15 7.55 86.40 0.65 0.81 16 4 C -0.09 -1.96 4.01 -10.15 -0.04 -2.00 16 5 C 0.05 1.32 4.67 86.30 0.40 1.72 16 6 N -0.52 -13.84 4.99 -856.73 -4.27 -18.11 16 7 C 0.03 0.71 6.14 86.45 0.53 1.24 16 8 C -0.12 -2.43 7.00 31.49 0.22 -2.21 16 9 C -0.12 -3.37 5.96 31.49 0.19 -3.18 16 10 C 0.07 2.13 2.24 45.06 0.10 2.23 16 11 H 0.04 1.42 8.00 -2.39 -0.02 1.40 16 12 C -0.07 -2.98 4.80 30.59 0.15 -2.84 16 13 C -0.01 -0.25 3.86 29.85 0.12 -0.14 16 14 C -0.53 -31.55 9.66 25.60 0.25 -31.30 16 15 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 16 C 0.00 0.18 5.47 84.65 0.46 0.64 16 17 N -0.95 -60.97 13.96 21.44 0.30 -60.67 16 18 Si 0.95 44.64 27.47 68.60 1.88 46.52 16 19 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 22 C 0.01 0.23 7.54 86.36 0.65 0.88 16 23 H 0.03 0.64 7.62 -2.39 -0.02 0.62 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 1.34 7.88 -2.39 -0.02 1.32 16 28 H 0.10 2.12 7.62 -2.39 -0.02 2.11 16 29 H 0.06 1.62 6.71 -2.39 -0.02 1.61 16 30 H 0.05 1.09 7.64 -2.39 -0.02 1.07 16 31 H 0.05 0.94 7.68 -2.39 -0.02 0.92 16 32 H 0.09 1.64 7.85 -2.39 -0.02 1.62 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.87 7.74 -2.39 -0.02 1.85 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.05 1.99 7.96 -2.39 -0.02 1.97 16 38 H 0.04 1.58 7.17 -2.38 -0.02 1.57 16 39 H 0.02 0.72 7.20 -2.38 -0.02 0.70 16 40 H 0.02 0.98 7.20 -2.39 -0.02 0.97 16 41 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 42 H 0.06 1.58 7.37 -2.39 -0.02 1.56 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -66.61 331.20 -2.41 -69.02 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.88 Total: 13.65 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 4.91 Total: -33.14 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -10.08 Total: -96.06 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -66.61 -2.41 -69.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.208 kcal (2) G-P(sol) polarization free energy of solvation -66.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds