Wall clock time and date at job start Mon Mar 30 2020 03:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47955 * 111.00083 * 2 1 4 4 C 1.53934 * 86.18382 * 222.42098 * 3 2 1 5 5 C 1.52995 * 113.73396 * 138.08059 * 4 3 2 6 6 N 1.46906 * 109.46837 * 175.00103 * 5 4 3 7 7 C 1.47436 * 110.99898 * 69.87309 * 6 5 4 8 8 C 1.54324 * 107.23089 * 123.25894 * 7 6 5 9 9 C 1.55140 * 103.01888 * 22.28261 * 8 7 6 10 10 C 1.47851 * 110.99786 * 190.71864 * 6 5 4 11 11 H 1.08997 * 110.37354 * 332.46432 * 10 6 5 12 12 C 1.52999 * 110.37286 * 94.80531 * 10 6 5 13 13 C 1.52994 * 109.47326 * 294.99742 * 12 10 6 14 14 C 1.50704 * 109.47243 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99679 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00167 * 179.97438 * 14 13 12 17 17 N 1.31524 * 119.99945 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00069 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47067 * 90.00533 * 18 16 14 20 20 H 1.48503 * 109.46979 * 210.00248 * 18 16 14 21 21 H 1.48496 * 109.47066 * 329.99900 * 18 16 14 22 22 C 1.47959 * 110.99650 * 260.64084 * 2 1 3 23 23 H 1.09006 * 109.47455 * 59.99458 * 1 2 3 24 24 H 1.08999 * 109.47590 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46945 * 299.99687 * 1 2 3 26 26 H 1.09009 * 113.75782 * 108.10254 * 3 2 1 27 27 H 1.09004 * 113.76392 * 336.74296 * 3 2 1 28 28 H 1.09001 * 113.72853 * 269.25877 * 4 3 2 29 29 H 1.09003 * 109.47161 * 55.00407 * 5 4 3 30 30 H 1.08999 * 109.47425 * 295.00201 * 5 4 3 31 31 H 1.08998 * 109.88931 * 242.66034 * 7 6 5 32 32 H 1.08996 * 109.89509 * 3.69403 * 7 6 5 33 33 H 1.08995 * 110.70829 * 140.66528 * 8 7 6 34 34 H 1.09006 * 110.70516 * 263.89850 * 8 7 6 35 35 H 1.08996 * 110.99132 * 82.43912 * 9 8 7 36 36 H 1.09002 * 110.98829 * 206.21612 * 9 8 7 37 37 H 1.08998 * 109.47181 * 54.99909 * 12 10 6 38 38 H 1.09003 * 109.47035 * 174.99995 * 12 10 6 39 39 H 1.09004 * 109.47492 * 300.00409 * 13 12 10 40 40 H 1.09003 * 109.46858 * 60.00143 * 13 12 10 41 41 H 0.97005 * 119.99731 * 179.97438 * 17 16 14 42 42 H 1.09000 * 113.76229 * 23.27188 * 22 2 1 43 43 H 1.08998 * 113.76575 * 251.90009 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8793 -1.0361 5 6 3.2610 1.8571 -2.1881 6 7 4.3323 1.3427 -3.0518 7 6 3.8844 0.1518 -3.7967 8 6 4.0778 0.4522 -5.2980 9 6 5.1513 1.5722 -5.2949 10 6 4.7687 2.3688 -4.0227 11 1 3.9529 3.0588 -4.2380 12 6 5.9828 3.1288 -3.4849 13 6 5.5801 3.9147 -2.2355 14 6 6.7759 4.6638 -1.7061 15 1 7.7277 4.5872 -2.2106 16 6 6.6545 5.4476 -0.5783 17 7 5.4952 5.5411 0.0358 18 14 8.1365 6.3766 0.0774 19 1 8.1941 7.7219 -0.5487 20 1 8.0180 6.5209 1.5507 21 1 9.3754 5.6255 -0.2483 22 6 1.9992 -0.2246 -1.3630 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 2.4461 1.6802 0.9483 27 1 1.3010 2.1198 -0.3939 28 1 3.9458 0.5068 -0.5953 29 1 3.5527 2.8274 -1.7863 30 1 2.3456 1.9650 -2.7698 31 1 4.4850 -0.7118 -3.5110 32 1 2.8325 -0.0426 -3.5875 33 1 4.4428 -0.4301 -5.8237 34 1 3.1488 0.8099 -5.7422 35 1 6.1532 1.1524 -5.2062 36 1 5.0685 2.1948 -6.1858 37 1 6.7712 2.4205 -3.2301 38 1 6.3463 3.8186 -4.2465 39 1 4.7917 4.6230 -2.4901 40 1 5.2167 3.2248 -1.4738 41 1 5.4099 6.0923 0.8294 42 1 1.3010 0.0442 -2.1556 43 1 2.4459 -1.2088 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260992920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:34 Heat of formation + Delta-G solvation = 27.434787 kcal Electronic energy + Delta-G solvation = -19509.957056 eV Core-core repulsion = 16783.532413 eV Total energy + Delta-G solvation = -2726.424642 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.06552 -38.46844 -33.61704 -32.64233 -31.45269 -29.76551 -27.79951 -26.16815 -25.69663 -24.34602 -22.53731 -20.69994 -20.57239 -19.54196 -19.01345 -16.36078 -16.19315 -15.70768 -15.11448 -14.82209 -14.58643 -14.40028 -13.73919 -13.23073 -12.94263 -12.57624 -12.55239 -12.33628 -12.22874 -12.02641 -11.51501 -11.20984 -11.10507 -11.04213 -10.91985 -10.82566 -10.67024 -10.40501 -10.37608 -10.19221 -10.11911 -9.58330 -9.06494 -8.88158 -8.70289 -8.23912 -7.80621 -5.91916 -3.92211 3.36611 3.42970 3.46814 4.05816 4.27326 4.52910 4.74577 4.91210 4.92559 5.06247 5.12630 5.23176 5.36309 5.44305 5.48401 5.59384 5.63778 5.64862 5.73299 5.77442 5.79674 5.85875 5.94193 5.98039 6.04470 6.14417 6.18448 6.35900 6.41241 6.46570 6.48787 6.58543 6.68229 6.98204 7.11878 7.27997 7.54319 7.60043 7.78644 8.00626 8.10768 8.54885 9.14643 9.70768 11.19260 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.006565 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.618042 B = 4263.905167 C = 5765.590215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.487 5.487 3 C 0.007 3.993 4 C -0.099 4.099 5 C 0.051 3.949 6 N -0.513 5.513 7 C 0.040 3.960 8 C -0.143 4.143 9 C -0.126 4.126 10 C 0.075 3.925 11 H 0.046 0.954 12 C -0.095 4.095 13 C 0.021 3.979 14 C -0.515 4.515 15 H 0.052 0.948 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.002 3.998 23 H 0.031 0.969 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.022 0.978 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.006 0.994 40 H 0.032 0.968 41 H 0.258 0.742 42 H 0.063 0.937 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.484 -10.830 -6.493 15.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.209 5.209 3 C -0.122 4.122 4 C -0.118 4.118 5 C -0.078 4.078 6 N -0.237 5.237 7 C -0.088 4.088 8 C -0.182 4.182 9 C -0.164 4.164 10 C -0.033 4.033 11 H 0.064 0.936 12 C -0.133 4.133 13 C -0.016 4.016 14 C -0.554 4.554 15 H 0.070 0.930 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.716 3.284 19 H -0.209 1.209 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.127 4.127 23 H 0.049 0.951 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.086 0.914 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.040 0.960 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.024 0.976 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.019 -11.339 -5.467 14.925 hybrid contribution -0.419 1.337 -0.699 1.565 sum -8.438 -10.002 -6.166 14.466 Atomic orbital electron populations 1.22839 0.90341 1.01844 1.00868 1.68464 1.08425 1.19482 1.24548 1.23976 0.96883 0.90519 1.00840 1.22931 0.98211 0.95028 0.95620 1.22527 0.91750 1.00060 0.93429 1.63444 1.35119 1.05155 1.19977 1.22888 0.99002 0.95082 0.91819 1.22779 0.99062 0.99198 0.97132 1.22765 0.99116 0.96724 0.97791 1.22717 0.98300 0.92516 0.89741 0.93602 1.21583 0.94944 0.97523 0.99287 1.19186 0.96185 0.94235 0.91997 1.21297 0.96362 1.27237 1.10467 0.92972 1.24982 0.95637 0.96882 0.96860 1.69957 1.23472 1.40226 1.19942 0.86664 0.83496 0.80219 0.78023 1.20874 1.21326 1.19952 1.24162 0.97273 1.00674 0.90560 0.95063 0.91586 0.91502 0.88884 0.91394 0.87338 0.87645 0.95982 0.91135 0.93125 0.91403 0.92184 0.90724 0.91492 0.92623 0.93495 0.97608 0.94960 0.93229 0.91910 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.64 60.07 0.58 0.47 16 2 N -0.49 -6.69 6.56 -246.58 -1.62 -8.31 16 3 C 0.01 0.10 7.55 -2.77 -0.02 0.08 16 4 C -0.10 -1.50 3.84 -89.69 -0.34 -1.85 16 5 C 0.05 0.84 4.05 -3.82 -0.02 0.83 16 6 N -0.51 -8.55 4.62 -223.38 -1.03 -9.58 16 7 C 0.04 0.54 6.21 -2.84 -0.02 0.52 16 8 C -0.14 -1.74 6.94 -24.91 -0.17 -1.91 16 9 C -0.13 -1.76 6.49 -24.59 -0.16 -1.92 16 10 C 0.07 1.30 2.58 -66.19 -0.17 1.13 16 11 H 0.05 0.82 7.81 -51.93 -0.41 0.42 16 12 C -0.10 -1.99 4.88 -26.73 -0.13 -2.12 16 13 C 0.02 0.53 3.78 -27.88 -0.11 0.42 16 14 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 18 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.00 0.02 5.72 -2.77 -0.02 0.01 16 23 H 0.03 0.33 7.62 -51.93 -0.40 -0.06 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16 27 H 0.07 0.96 7.88 -51.93 -0.41 0.55 16 28 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 29 H 0.11 2.13 5.29 -51.93 -0.27 1.86 16 30 H 0.02 0.34 7.66 -51.93 -0.40 -0.05 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.63 5.42 -51.93 -0.28 0.35 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.03 0.87 6.00 -51.93 -0.31 0.55 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.06 0.76 6.92 -51.93 -0.36 0.40 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 328.00 15.07 4.94 4.94 Total: -1.00 -29.58 328.00 -10.84 -40.42 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.87 Total: -0.56 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -0.98 Total: -17.81 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: -1.91 Total: -43.89 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.58 -10.84 -40.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.856 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds