Wall clock time and date at job start Mon Mar 30 2020 03:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47955 * 111.00083 * 2 1 4 4 C 1.53934 * 86.18382 * 222.42098 * 3 2 1 5 5 C 1.52995 * 113.73396 * 138.08059 * 4 3 2 6 6 N 1.46906 * 109.46837 * 175.00103 * 5 4 3 7 7 C 1.47436 * 110.99898 * 69.87309 * 6 5 4 8 8 C 1.54324 * 107.23089 * 123.25894 * 7 6 5 9 9 C 1.55140 * 103.01888 * 22.28261 * 8 7 6 10 10 C 1.47851 * 110.99786 * 190.71864 * 6 5 4 11 11 H 1.08997 * 110.37354 * 332.46432 * 10 6 5 12 12 C 1.52999 * 110.37286 * 94.80531 * 10 6 5 13 13 C 1.52994 * 109.47326 * 294.99742 * 12 10 6 14 14 C 1.50704 * 109.47243 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99679 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00167 * 179.97438 * 14 13 12 17 17 N 1.31524 * 119.99945 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00069 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47067 * 90.00533 * 18 16 14 20 20 H 1.48503 * 109.46979 * 210.00248 * 18 16 14 21 21 H 1.48496 * 109.47066 * 329.99900 * 18 16 14 22 22 C 1.47959 * 110.99650 * 260.64084 * 2 1 3 23 23 H 1.09006 * 109.47455 * 59.99458 * 1 2 3 24 24 H 1.08999 * 109.47590 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46945 * 299.99687 * 1 2 3 26 26 H 1.09009 * 113.75782 * 108.10254 * 3 2 1 27 27 H 1.09004 * 113.76392 * 336.74296 * 3 2 1 28 28 H 1.09001 * 113.72853 * 269.25877 * 4 3 2 29 29 H 1.09003 * 109.47161 * 55.00407 * 5 4 3 30 30 H 1.08999 * 109.47425 * 295.00201 * 5 4 3 31 31 H 1.08998 * 109.88931 * 242.66034 * 7 6 5 32 32 H 1.08996 * 109.89509 * 3.69403 * 7 6 5 33 33 H 1.08995 * 110.70829 * 140.66528 * 8 7 6 34 34 H 1.09006 * 110.70516 * 263.89850 * 8 7 6 35 35 H 1.08996 * 110.99132 * 82.43912 * 9 8 7 36 36 H 1.09002 * 110.98829 * 206.21612 * 9 8 7 37 37 H 1.08998 * 109.47181 * 54.99909 * 12 10 6 38 38 H 1.09003 * 109.47035 * 174.99995 * 12 10 6 39 39 H 1.09004 * 109.47492 * 300.00409 * 13 12 10 40 40 H 1.09003 * 109.46858 * 60.00143 * 13 12 10 41 41 H 0.97005 * 119.99731 * 179.97438 * 17 16 14 42 42 H 1.09000 * 113.76229 * 23.27188 * 22 2 1 43 43 H 1.08998 * 113.76575 * 251.90009 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8793 -1.0361 5 6 3.2610 1.8571 -2.1881 6 7 4.3323 1.3427 -3.0518 7 6 3.8844 0.1518 -3.7967 8 6 4.0778 0.4522 -5.2980 9 6 5.1513 1.5722 -5.2949 10 6 4.7687 2.3688 -4.0227 11 1 3.9529 3.0588 -4.2380 12 6 5.9828 3.1288 -3.4849 13 6 5.5801 3.9147 -2.2355 14 6 6.7759 4.6638 -1.7061 15 1 7.7277 4.5872 -2.2106 16 6 6.6545 5.4476 -0.5783 17 7 5.4952 5.5411 0.0358 18 14 8.1365 6.3766 0.0774 19 1 8.1941 7.7219 -0.5487 20 1 8.0180 6.5209 1.5507 21 1 9.3754 5.6255 -0.2483 22 6 1.9992 -0.2246 -1.3630 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 2.4461 1.6802 0.9483 27 1 1.3010 2.1198 -0.3939 28 1 3.9458 0.5068 -0.5953 29 1 3.5527 2.8274 -1.7863 30 1 2.3456 1.9650 -2.7698 31 1 4.4850 -0.7118 -3.5110 32 1 2.8325 -0.0426 -3.5875 33 1 4.4428 -0.4301 -5.8237 34 1 3.1488 0.8099 -5.7422 35 1 6.1532 1.1524 -5.2062 36 1 5.0685 2.1948 -6.1858 37 1 6.7712 2.4205 -3.2301 38 1 6.3463 3.8186 -4.2465 39 1 4.7917 4.6230 -2.4901 40 1 5.2167 3.2248 -1.4738 41 1 5.4099 6.0923 0.8294 42 1 1.3010 0.0442 -2.1556 43 1 2.4459 -1.2088 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260992920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:34 Heat of formation + Delta-G solvation = 7.246696 kcal Electronic energy + Delta-G solvation = -19510.832477 eV Core-core repulsion = 16783.532413 eV Total energy + Delta-G solvation = -2727.300064 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.23668 -39.69226 -35.62071 -33.83804 -33.29819 -30.85629 -29.45835 -27.32354 -26.83959 -26.16262 -23.83275 -22.36361 -21.70843 -20.82489 -20.34967 -18.42921 -17.42089 -17.03627 -16.49758 -16.22037 -15.99443 -15.68678 -15.07444 -14.39317 -14.32150 -14.14588 -14.03878 -13.66658 -13.65228 -13.22565 -13.00859 -12.85025 -12.67629 -12.59924 -12.24016 -12.18290 -11.99890 -11.95817 -11.61287 -11.50703 -11.43906 -11.40507 -10.89032 -10.81323 -10.45589 -9.79382 -9.09712 -8.14040 -6.23388 1.39886 1.41158 1.52082 2.43752 2.97196 3.02383 3.18554 3.57216 3.77433 3.81303 3.96251 4.12375 4.16721 4.33651 4.36003 4.37266 4.45990 4.54422 4.57347 4.63742 4.71041 4.79154 4.80988 4.84142 4.92021 4.95288 5.00407 5.03862 5.07706 5.13836 5.28843 5.32776 5.36242 5.40341 5.43618 5.59040 5.87000 5.96673 6.07503 6.26853 6.34437 6.36634 6.93806 7.44276 8.96706 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.006565 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.618042 B = 4263.905167 C = 5765.590215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.499 5.499 3 C 0.006 3.994 4 C -0.102 4.102 5 C 0.062 3.938 6 N -0.532 5.532 7 C 0.039 3.961 8 C -0.132 4.132 9 C -0.120 4.120 10 C 0.075 3.925 11 H 0.036 0.964 12 C -0.085 4.085 13 C 0.032 3.968 14 C -0.542 4.542 15 H 0.053 0.947 16 C 0.003 3.997 17 N -0.928 5.928 18 Si 0.958 3.042 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.266 1.266 22 C 0.019 3.981 23 H 0.039 0.961 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.047 0.953 38 H 0.049 0.951 39 H -0.022 1.022 40 H 0.012 0.988 41 H 0.261 0.739 42 H 0.078 0.922 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.722 -12.125 -7.780 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.222 5.222 3 C -0.124 4.124 4 C -0.121 4.121 5 C -0.067 4.067 6 N -0.257 5.257 7 C -0.089 4.089 8 C -0.171 4.171 9 C -0.158 4.158 10 C -0.033 4.033 11 H 0.054 0.946 12 C -0.123 4.123 13 C -0.005 4.005 14 C -0.580 4.580 15 H 0.071 0.929 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.783 3.217 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.191 1.191 22 C -0.109 4.109 23 H 0.058 0.942 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.067 0.933 39 H -0.004 1.004 40 H 0.030 0.970 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.259 -12.648 -6.768 16.553 hybrid contribution -0.362 1.748 -0.259 1.803 sum -8.621 -10.900 -7.027 15.573 Atomic orbital electron populations 1.22900 0.88572 1.03025 1.01447 1.68439 1.10295 1.18228 1.25196 1.23920 0.97013 0.91554 0.99873 1.22826 0.97968 0.96012 0.95316 1.22296 0.92096 0.98288 0.93979 1.63345 1.35759 1.05963 1.20608 1.22963 0.99835 0.93462 0.92593 1.22756 0.98873 0.99297 0.96142 1.22722 0.99782 0.97109 0.96190 1.22574 0.96274 0.92897 0.91520 0.94576 1.21408 0.96511 0.97171 0.97214 1.19009 0.94434 0.93421 0.93587 1.21752 0.97214 1.27971 1.11073 0.92917 1.25878 0.98709 0.97791 0.97108 1.70093 1.25593 1.40868 1.20318 0.85561 0.79815 0.78976 0.77372 1.19856 1.20810 1.19066 1.24093 0.96183 0.99990 0.90618 0.94240 0.90048 0.91232 0.90572 0.90939 0.89722 0.92219 0.94742 0.90683 0.91774 0.88929 0.91059 0.90833 0.89951 0.93413 0.93277 1.00415 0.96990 0.93049 0.90375 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.22 9.64 127.69 1.23 1.01 16 2 N -0.50 -13.20 6.56 -934.05 -6.12 -19.33 16 3 C 0.01 0.17 7.55 86.41 0.65 0.83 16 4 C -0.10 -3.16 3.84 -10.15 -0.04 -3.20 16 5 C 0.06 2.12 4.05 86.30 0.35 2.47 16 6 N -0.53 -17.72 4.62 -860.65 -3.98 -21.70 16 7 C 0.04 0.96 6.21 86.65 0.54 1.50 16 8 C -0.13 -2.76 6.94 31.78 0.22 -2.54 16 9 C -0.12 -3.10 6.49 31.98 0.21 -2.89 16 10 C 0.08 2.61 2.58 45.38 0.12 2.72 16 11 H 0.04 1.31 7.81 -2.39 -0.02 1.29 16 12 C -0.08 -3.65 4.88 30.59 0.15 -3.50 16 13 C 0.03 1.74 3.78 29.85 0.11 1.85 16 14 C -0.54 -31.83 9.11 25.60 0.23 -31.59 16 15 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 16 C 0.00 0.16 5.46 84.65 0.46 0.63 16 17 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 18 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 C 0.02 0.47 5.72 86.41 0.49 0.96 16 23 H 0.04 0.75 7.62 -2.38 -0.02 0.73 16 24 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 27 H 0.07 2.08 7.88 -2.38 -0.02 2.06 16 28 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 29 H 0.06 2.60 5.29 -2.39 -0.01 2.58 16 30 H 0.03 1.07 7.66 -2.39 -0.02 1.05 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.41 5.42 -2.39 -0.01 1.40 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.07 1.93 8.06 -2.39 -0.02 1.91 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H -0.02 -1.32 8.14 -2.38 -0.02 -1.34 16 40 H 0.01 0.68 6.00 -2.39 -0.01 0.67 16 41 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 42 H 0.08 1.66 6.92 -2.39 -0.02 1.65 16 43 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -65.37 328.00 -2.12 -67.48 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.95 Total: 14.65 kcal Atomic # 6 Polarization: -36.49 SS G_CDS: 4.73 Total: -31.76 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -9.82 Total: -97.85 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -65.37 -2.12 -67.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.729 kcal (2) G-P(sol) polarization free energy of solvation -65.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds