Wall clock time and date at job start Mon Mar 30 2020 03:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47959 * 111.00307 * 2 1 4 4 C 1.53937 * 86.17825 * 222.41494 * 3 2 1 5 5 N 1.46906 * 113.72905 * 138.08101 * 4 3 2 6 6 C 1.47949 * 110.99544 * 195.97857 * 5 4 3 7 7 C 1.53923 * 113.32856 * 192.18012 * 6 5 4 8 8 C 1.50537 * 112.93488 * 317.75829 * 7 6 5 9 9 C 1.54515 * 108.86189 * 91.75507 * 8 7 6 10 10 C 1.45881 * 111.67300 * 282.74744 * 9 8 7 11 11 H 1.08995 * 108.84469 * 300.67553 * 10 9 8 12 12 C 1.53001 * 108.84013 * 182.31795 * 10 9 8 13 13 C 1.50699 * 109.47357 * 61.86867 * 12 10 9 14 14 H 1.08000 * 119.99850 * 359.97438 * 13 12 10 15 15 C 1.37879 * 120.00052 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00096 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99792 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47140 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47258 * 120.00125 * 17 15 13 20 20 H 1.48495 * 109.46974 * 239.99732 * 17 15 13 21 21 C 1.44300 * 111.00141 * 68.55789 * 5 4 3 22 22 C 1.48188 * 111.06863 * 260.56308 * 2 1 3 23 23 H 1.09002 * 109.46611 * 59.99545 * 1 2 3 24 24 H 1.08998 * 109.47578 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46638 * 300.00147 * 1 2 3 26 26 H 1.09002 * 113.75721 * 108.10249 * 3 2 1 27 27 H 1.08998 * 113.85961 * 336.74863 * 3 2 1 28 28 H 1.09000 * 113.73658 * 269.25505 * 4 3 2 29 29 H 1.09001 * 108.71488 * 71.19007 * 6 5 4 30 30 H 1.08993 * 108.61147 * 313.10261 * 6 5 4 31 31 H 1.08995 * 108.79123 * 196.86877 * 7 6 5 32 32 H 1.08997 * 108.78923 * 78.64715 * 7 6 5 33 33 H 1.09000 * 109.57400 * 331.93624 * 8 7 6 34 34 H 1.09005 * 109.67567 * 211.62835 * 8 7 6 35 35 H 1.09000 * 109.04232 * 162.18741 * 9 8 7 36 36 H 1.08996 * 108.98494 * 43.27442 * 9 8 7 37 37 H 1.09007 * 109.46837 * 181.86268 * 12 10 9 38 38 H 1.09000 * 109.47744 * 301.86392 * 12 10 9 39 39 H 0.96999 * 120.00027 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.69472 * 101.64114 * 21 5 4 41 41 H 1.09003 * 109.69446 * 341.05693 * 21 5 4 42 42 H 1.08995 * 113.76348 * 23.24495 * 22 2 1 43 43 H 1.09001 * 113.82732 * 251.80979 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0212 0.8791 -1.0360 5 7 3.2517 1.8179 -2.1422 6 6 3.9255 1.1467 -3.2754 7 6 4.4593 2.1275 -4.3348 8 6 3.4948 3.2420 -4.6412 9 6 3.8065 4.4405 -3.7172 10 6 3.2991 4.2257 -2.3664 11 1 2.2199 4.0807 -2.4147 12 6 3.5905 5.4701 -1.5254 13 6 2.8717 6.6555 -2.1164 14 1 2.2678 6.5336 -3.0034 15 6 2.9851 7.8957 -1.5247 16 7 3.7200 8.0441 -0.4442 17 14 2.0947 9.3652 -2.2577 18 1 1.3410 8.9364 -3.4633 19 1 1.1510 9.9225 -1.2557 20 1 3.0846 10.4049 -2.6372 21 6 3.9353 3.0022 -1.6814 22 6 2.0017 -0.2267 -1.3641 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.4461 1.6801 0.9483 27 1 1.3023 2.1212 -0.3935 28 1 3.9459 0.5066 -0.5953 29 1 3.2170 0.4690 -3.7519 30 1 4.7600 0.5627 -2.8875 31 1 4.6621 1.5764 -5.2530 32 1 5.3925 2.5601 -3.9741 33 1 2.4747 2.9008 -4.4652 34 1 3.6037 3.5457 -5.6824 35 1 3.3466 5.3378 -4.1312 36 1 4.8863 4.5827 -3.6729 37 1 3.2448 5.3077 -0.5044 38 1 4.6635 5.6618 -1.5196 39 1 3.8001 8.9167 -0.0282 40 1 4.9915 2.9422 -1.9438 41 1 3.8293 3.0903 -0.6001 42 1 1.3043 0.0404 -2.1580 43 1 2.4505 -1.2102 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261001588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:28 Heat of formation + Delta-G solvation = 25.819535 kcal Electronic energy + Delta-G solvation = -19713.103716 eV Core-core repulsion = 16986.609031 eV Total energy + Delta-G solvation = -2726.494685 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.16289 -38.14512 -34.42316 -33.11859 -31.84767 -29.59193 -27.67167 -26.24515 -25.45850 -24.15978 -23.17307 -21.63994 -20.00438 -19.15475 -18.91099 -16.47173 -16.36582 -15.75871 -15.20770 -14.52939 -14.41791 -14.28260 -13.87075 -13.55097 -13.03099 -12.77528 -12.59561 -12.41916 -12.28465 -11.92369 -11.45097 -11.40073 -11.17378 -11.09089 -10.69812 -10.66241 -10.55053 -10.39496 -10.31921 -10.08496 -9.82030 -9.49166 -9.04326 -8.90319 -8.80279 -8.30817 -7.86647 -5.95622 -3.96402 3.32915 3.40732 3.44559 3.86411 4.20535 4.48471 4.51642 5.05673 5.08391 5.13391 5.23332 5.29781 5.40254 5.42604 5.50156 5.61215 5.62050 5.66741 5.75882 5.82107 5.86181 5.88833 5.97426 6.00592 6.18865 6.23601 6.29548 6.32850 6.39074 6.51364 6.76364 6.93671 7.01110 7.11141 7.22007 7.35009 7.45210 7.61715 7.75653 7.93620 8.06390 8.49604 9.10421 9.66956 11.15839 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021021 B = 0.005904 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.700484 B = 4741.374278 C = 5541.019373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.490 5.490 3 C 0.014 3.986 4 C 0.055 3.945 5 N -0.536 5.536 6 C 0.068 3.932 7 C -0.117 4.117 8 C -0.115 4.115 9 C -0.100 4.100 10 C -0.073 4.073 11 H 0.062 0.938 12 C 0.025 3.975 13 C -0.511 4.511 14 H 0.057 0.943 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.887 3.113 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.068 3.932 22 C 0.012 3.988 23 H 0.037 0.963 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.025 0.975 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.013 0.987 38 H 0.012 0.988 39 H 0.258 0.742 40 H 0.034 0.966 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.708 -15.619 -3.769 16.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.212 5.212 3 C -0.115 4.115 4 C -0.054 4.054 5 N -0.261 5.261 6 C -0.059 4.059 7 C -0.154 4.154 8 C -0.152 4.152 9 C -0.137 4.137 10 C -0.092 4.092 11 H 0.080 0.920 12 C -0.012 4.012 13 C -0.549 4.549 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.715 3.285 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.059 4.059 22 C -0.117 4.117 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.031 0.969 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.927 -15.796 -3.273 16.247 hybrid contribution 0.017 1.192 -0.607 1.338 sum -1.910 -14.604 -3.880 15.231 Atomic orbital electron populations 1.22819 0.89582 1.01897 1.01379 1.68445 1.09195 1.19311 1.24281 1.24020 0.97084 0.91164 0.99185 1.23511 0.96846 0.93067 0.91964 1.61083 1.51789 1.06202 1.07051 1.22271 0.96142 0.95746 0.91761 1.21378 0.99540 0.97176 0.97336 1.21361 0.99645 0.95682 0.98548 1.20568 1.00285 0.97202 0.95642 1.20051 0.99809 0.94151 0.95163 0.91990 1.19215 0.96702 0.90702 0.94604 1.21309 1.29008 0.93189 1.11399 0.92492 1.25016 0.95554 0.98911 0.95039 1.69976 1.40020 1.23492 1.20188 0.86611 0.79609 0.83042 0.79196 1.19765 1.21136 1.21146 1.21954 0.95428 0.89498 0.99052 1.24075 0.97343 0.98883 0.91430 0.94409 0.91562 0.91400 0.89540 0.89737 0.91491 0.91772 0.95712 0.92412 0.92392 0.91532 0.93240 0.91003 0.93613 0.96833 0.96944 0.93208 0.94742 0.91746 0.90360 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.65 60.07 0.58 0.50 16 2 N -0.49 -6.22 6.55 -246.54 -1.62 -7.84 16 3 C 0.01 0.20 6.85 -2.76 -0.02 0.18 16 4 C 0.06 0.74 3.16 -69.40 -0.22 0.52 16 5 N -0.54 -7.88 3.96 -228.05 -0.90 -8.78 16 6 C 0.07 0.88 5.14 -2.77 -0.01 0.87 16 7 C -0.12 -1.55 5.28 -27.48 -0.14 -1.69 16 8 C -0.11 -1.74 5.63 -27.17 -0.15 -1.90 16 9 C -0.10 -1.88 4.43 -29.31 -0.13 -2.01 16 10 C -0.07 -1.46 1.82 -93.48 -0.17 -1.64 16 11 H 0.06 1.33 8.08 -51.93 -0.42 0.91 16 12 C 0.03 0.64 4.34 -27.88 -0.12 0.52 16 13 C -0.51 -14.16 8.29 -34.44 -0.29 -14.45 16 14 H 0.06 1.55 6.75 -52.49 -0.35 1.19 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 17 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.07 1.18 4.62 -4.70 -0.02 1.16 16 22 C 0.01 0.14 7.15 -2.63 -0.02 0.12 16 23 H 0.04 0.42 7.63 -51.93 -0.40 0.02 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.08 1.27 7.93 -51.93 -0.41 0.86 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.76 7.89 -51.93 -0.41 0.35 16 30 H 0.02 0.31 8.02 -51.93 -0.42 -0.11 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.82 6.66 -51.93 -0.35 0.47 16 33 H 0.07 1.05 7.79 -51.93 -0.40 0.65 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.50 6.37 -51.93 -0.33 1.17 16 36 H 0.05 0.87 7.58 -51.93 -0.39 0.48 16 37 H 0.01 0.36 8.01 -51.93 -0.42 -0.05 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 40 H 0.03 0.59 6.79 -51.93 -0.35 0.24 16 41 H 0.06 1.15 6.74 -51.93 -0.35 0.80 16 42 H 0.08 0.94 7.63 -51.93 -0.40 0.54 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 323.80 15.07 4.88 4.88 Total: -1.00 -28.99 323.80 -10.65 -39.65 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -7.91 Total: -2.02 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -0.82 Total: -16.35 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: -1.78 Total: -42.81 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.99 -10.65 -39.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261001588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.465 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds