Wall clock time and date at job start Mon Mar 30 2020 03:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47959 * 111.00307 * 2 1 4 4 C 1.53937 * 86.17825 * 222.41494 * 3 2 1 5 5 N 1.46906 * 113.72905 * 138.08101 * 4 3 2 6 6 C 1.47949 * 110.99544 * 195.97857 * 5 4 3 7 7 C 1.53923 * 113.32856 * 192.18012 * 6 5 4 8 8 C 1.50537 * 112.93488 * 317.75829 * 7 6 5 9 9 C 1.54515 * 108.86189 * 91.75507 * 8 7 6 10 10 C 1.45881 * 111.67300 * 282.74744 * 9 8 7 11 11 H 1.08995 * 108.84469 * 300.67553 * 10 9 8 12 12 C 1.53001 * 108.84013 * 182.31795 * 10 9 8 13 13 C 1.50699 * 109.47357 * 61.86867 * 12 10 9 14 14 H 1.08000 * 119.99850 * 359.97438 * 13 12 10 15 15 C 1.37879 * 120.00052 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00096 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99792 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47140 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47258 * 120.00125 * 17 15 13 20 20 H 1.48495 * 109.46974 * 239.99732 * 17 15 13 21 21 C 1.44300 * 111.00141 * 68.55789 * 5 4 3 22 22 C 1.48188 * 111.06863 * 260.56308 * 2 1 3 23 23 H 1.09002 * 109.46611 * 59.99545 * 1 2 3 24 24 H 1.08998 * 109.47578 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46638 * 300.00147 * 1 2 3 26 26 H 1.09002 * 113.75721 * 108.10249 * 3 2 1 27 27 H 1.08998 * 113.85961 * 336.74863 * 3 2 1 28 28 H 1.09000 * 113.73658 * 269.25505 * 4 3 2 29 29 H 1.09001 * 108.71488 * 71.19007 * 6 5 4 30 30 H 1.08993 * 108.61147 * 313.10261 * 6 5 4 31 31 H 1.08995 * 108.79123 * 196.86877 * 7 6 5 32 32 H 1.08997 * 108.78923 * 78.64715 * 7 6 5 33 33 H 1.09000 * 109.57400 * 331.93624 * 8 7 6 34 34 H 1.09005 * 109.67567 * 211.62835 * 8 7 6 35 35 H 1.09000 * 109.04232 * 162.18741 * 9 8 7 36 36 H 1.08996 * 108.98494 * 43.27442 * 9 8 7 37 37 H 1.09007 * 109.46837 * 181.86268 * 12 10 9 38 38 H 1.09000 * 109.47744 * 301.86392 * 12 10 9 39 39 H 0.96999 * 120.00027 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.69472 * 101.64114 * 21 5 4 41 41 H 1.09003 * 109.69446 * 341.05693 * 21 5 4 42 42 H 1.08995 * 113.76348 * 23.24495 * 22 2 1 43 43 H 1.09001 * 113.82732 * 251.80979 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0212 0.8791 -1.0360 5 7 3.2517 1.8179 -2.1422 6 6 3.9255 1.1467 -3.2754 7 6 4.4593 2.1275 -4.3348 8 6 3.4948 3.2420 -4.6412 9 6 3.8065 4.4405 -3.7172 10 6 3.2991 4.2257 -2.3664 11 1 2.2199 4.0807 -2.4147 12 6 3.5905 5.4701 -1.5254 13 6 2.8717 6.6555 -2.1164 14 1 2.2678 6.5336 -3.0034 15 6 2.9851 7.8957 -1.5247 16 7 3.7200 8.0441 -0.4442 17 14 2.0947 9.3652 -2.2577 18 1 1.3410 8.9364 -3.4633 19 1 1.1510 9.9225 -1.2557 20 1 3.0846 10.4049 -2.6372 21 6 3.9353 3.0022 -1.6814 22 6 2.0017 -0.2267 -1.3641 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.4461 1.6801 0.9483 27 1 1.3023 2.1212 -0.3935 28 1 3.9459 0.5066 -0.5953 29 1 3.2170 0.4690 -3.7519 30 1 4.7600 0.5627 -2.8875 31 1 4.6621 1.5764 -5.2530 32 1 5.3925 2.5601 -3.9741 33 1 2.4747 2.9008 -4.4652 34 1 3.6037 3.5457 -5.6824 35 1 3.3466 5.3378 -4.1312 36 1 4.8863 4.5827 -3.6729 37 1 3.2448 5.3077 -0.5044 38 1 4.6635 5.6618 -1.5196 39 1 3.8001 8.9167 -0.0282 40 1 4.9915 2.9422 -1.9438 41 1 3.8293 3.0903 -0.6001 42 1 1.3043 0.0404 -2.1580 43 1 2.4505 -1.2102 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261001588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:28 Heat of formation + Delta-G solvation = 6.523935 kcal Electronic energy + Delta-G solvation = -19713.940436 eV Core-core repulsion = 16986.609031 eV Total energy + Delta-G solvation = -2727.331405 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.26972 -39.45760 -36.02402 -34.60748 -33.62688 -30.61534 -29.44007 -27.36431 -26.89558 -25.56037 -24.54181 -23.16557 -21.17141 -20.53703 -20.23866 -18.52483 -17.54237 -16.81282 -16.65151 -16.35007 -15.51778 -15.47424 -15.11580 -15.00381 -14.30709 -14.22335 -14.10352 -13.65699 -13.51491 -13.44044 -13.12045 -12.83635 -12.59247 -12.42889 -12.35076 -12.25306 -11.92454 -11.68237 -11.56589 -11.51950 -11.33454 -11.15682 -10.83330 -10.73544 -10.51963 -9.85334 -9.07642 -8.16484 -6.25207 1.39056 1.39615 1.52481 2.41913 2.79886 3.14024 3.16755 3.44854 3.90294 4.04770 4.11500 4.17430 4.23248 4.27939 4.32746 4.37566 4.52147 4.58471 4.62714 4.69359 4.75506 4.80420 4.81659 4.86777 4.92348 4.97889 5.14623 5.17785 5.20217 5.30565 5.32184 5.38287 5.48077 5.54215 5.62529 5.69256 5.89594 5.96758 6.03460 6.26152 6.31162 6.40833 6.91046 7.42855 8.95612 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021021 B = 0.005904 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.700484 B = 4741.374278 C = 5541.019373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.496 5.496 3 C 0.010 3.990 4 C 0.055 3.945 5 N -0.542 5.542 6 C 0.066 3.934 7 C -0.115 4.115 8 C -0.103 4.103 9 C -0.098 4.098 10 C -0.057 4.057 11 H 0.048 0.952 12 C 0.031 3.969 13 C -0.524 4.524 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.936 5.936 17 Si 0.958 3.042 18 H -0.262 1.262 19 H -0.280 1.280 20 H -0.279 1.279 21 C 0.083 3.917 22 C 0.024 3.976 23 H 0.036 0.964 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.038 0.962 37 H -0.016 1.016 38 H -0.015 1.015 39 H 0.261 0.739 40 H 0.035 0.965 41 H 0.050 0.950 42 H 0.080 0.920 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.306 -17.265 -5.461 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.218 5.218 3 C -0.119 4.119 4 C -0.054 4.054 5 N -0.267 5.267 6 C -0.060 4.060 7 C -0.153 4.153 8 C -0.140 4.140 9 C -0.136 4.136 10 C -0.076 4.076 11 H 0.067 0.933 12 C -0.006 4.006 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.199 4.199 16 N -0.577 5.577 17 Si 0.783 3.217 18 H -0.186 1.186 19 H -0.206 1.206 20 H -0.205 1.205 21 C -0.045 4.045 22 C -0.104 4.104 23 H 0.054 0.946 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.003 0.997 38 H 0.004 0.996 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.532 -17.465 -4.979 18.336 hybrid contribution 0.205 1.691 -0.041 1.704 sum -2.327 -15.774 -5.020 16.716 Atomic orbital electron populations 1.22855 0.88538 1.02968 1.01307 1.68451 1.10318 1.18015 1.25063 1.23944 0.97262 0.91631 0.99087 1.23546 0.97153 0.93266 0.91395 1.60979 1.51669 1.05986 1.08077 1.22380 0.97017 0.95737 0.90887 1.21372 0.98283 0.96788 0.98845 1.21238 1.00009 0.94497 0.98274 1.20496 0.99357 0.98245 0.95464 1.19843 0.99207 0.93166 0.95373 0.93314 1.19116 0.94502 0.93015 0.93984 1.21676 1.28948 0.94180 1.11435 0.92212 1.25930 0.96385 1.02170 0.95417 1.70110 1.41547 1.24386 1.21656 0.85495 0.78429 0.79066 0.78668 1.18604 1.20599 1.20525 1.21606 0.95288 0.89779 0.97852 1.24056 0.96419 0.99043 0.90906 0.94569 0.89846 0.91483 0.90264 0.91507 0.91238 0.89749 0.94537 0.89354 0.93419 0.91827 0.91586 0.93573 0.94349 0.99742 0.99624 0.93017 0.94664 0.93099 0.90187 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.15 9.65 127.69 1.23 1.08 16 2 N -0.50 -11.85 6.55 -933.93 -6.12 -17.97 16 3 C 0.01 0.27 6.85 86.41 0.59 0.87 16 4 C 0.06 1.40 3.16 46.48 0.15 1.54 16 5 N -0.54 -15.24 3.96 -875.42 -3.47 -18.70 16 6 C 0.07 1.51 5.14 86.41 0.44 1.96 16 7 C -0.12 -2.72 5.28 30.11 0.16 -2.57 16 8 C -0.10 -2.92 5.63 30.31 0.17 -2.75 16 9 C -0.10 -3.73 4.43 28.93 0.13 -3.60 16 10 C -0.06 -2.35 1.82 -12.65 -0.02 -2.38 16 11 H 0.05 2.14 8.08 -2.39 -0.02 2.12 16 12 C 0.03 1.67 4.34 29.85 0.13 1.80 16 13 C -0.52 -29.97 8.29 25.60 0.21 -29.76 16 14 H 0.06 3.31 6.75 -2.91 -0.02 3.29 16 15 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 16 N -0.94 -57.85 13.29 21.45 0.28 -57.57 16 17 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 C 0.08 2.91 4.62 87.12 0.40 3.31 16 22 C 0.02 0.51 7.15 86.37 0.62 1.13 16 23 H 0.04 0.75 7.63 -2.39 -0.02 0.73 16 24 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.07 2.06 7.93 -2.39 -0.02 2.04 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.08 1.64 7.89 -2.39 -0.02 1.62 16 30 H 0.04 0.77 8.02 -2.39 -0.02 0.76 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.24 6.66 -2.39 -0.02 1.23 16 33 H 0.06 1.87 7.79 -2.39 -0.02 1.85 16 34 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.05 1.96 6.37 -2.39 -0.02 1.94 16 36 H 0.04 1.49 7.58 -2.39 -0.02 1.47 16 37 H -0.02 -0.92 8.01 -2.38 -0.02 -0.94 16 38 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 39 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.04 1.22 6.79 -2.39 -0.02 1.20 16 41 H 0.05 1.90 6.74 -2.39 -0.02 1.88 16 42 H 0.08 1.69 7.63 -2.39 -0.02 1.67 16 43 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -63.74 323.80 -1.66 -65.40 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.94 Total: 10.84 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 4.67 Total: -29.02 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -9.30 Total: -94.24 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -63.74 -1.66 -65.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261001588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.926 kcal (2) G-P(sol) polarization free energy of solvation -63.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds