Wall clock time and date at job start Mon Mar 30 2020 03:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47964 * 111.00002 * 2 1 4 4 C 1.53937 * 86.17991 * 222.41816 * 3 2 1 5 5 N 1.46903 * 113.73248 * 138.07851 * 4 3 2 6 6 C 1.47998 * 110.99794 * 56.04503 * 5 4 3 7 7 C 1.50452 * 112.82196 * 84.83994 * 6 5 4 8 8 C 1.54300 * 108.49303 * 93.73076 * 7 6 5 9 9 C 1.45874 * 112.19648 * 281.45137 * 8 7 6 10 10 C 1.54309 * 112.17948 * 61.11694 * 9 8 7 11 11 H 1.08996 * 109.63516 * 41.38838 * 10 9 8 12 12 C 1.53000 * 109.63506 * 161.78014 * 10 9 8 13 13 C 1.50708 * 109.46973 * 295.00190 * 12 10 9 14 14 H 1.07991 * 119.99789 * 0.02562 * 13 12 10 15 15 C 1.37877 * 120.00008 * 179.97438 * 13 12 10 16 16 N 1.31514 * 120.00089 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 C 1.48001 * 111.00165 * 184.76315 * 5 4 3 22 22 C 1.47963 * 111.00044 * 260.64047 * 2 1 3 23 23 H 1.09003 * 109.47102 * 60.00298 * 1 2 3 24 24 H 1.09006 * 109.46682 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46834 * 299.99925 * 1 2 3 26 26 H 1.08991 * 113.75733 * 108.09900 * 3 2 1 27 27 H 1.09000 * 113.85725 * 336.75006 * 3 2 1 28 28 H 1.08999 * 113.73403 * 269.25728 * 4 3 2 29 29 H 1.09002 * 108.81806 * 323.97989 * 6 5 4 30 30 H 1.08997 * 108.81573 * 205.69641 * 6 5 4 31 31 H 1.09001 * 109.63173 * 334.03075 * 7 6 5 32 32 H 1.09006 * 109.63175 * 213.43528 * 7 6 5 33 33 H 1.09006 * 108.93451 * 160.75441 * 8 7 6 34 34 H 1.08997 * 108.86697 * 42.11001 * 8 7 6 35 35 H 1.09004 * 108.93906 * 300.42479 * 9 8 7 36 36 H 1.08998 * 108.94332 * 181.81650 * 9 8 7 37 37 H 1.08994 * 109.48028 * 175.00247 * 12 10 9 38 38 H 1.09000 * 109.47206 * 55.00102 * 12 10 9 39 39 H 0.96997 * 119.99848 * 180.02562 * 16 15 13 40 40 H 1.09000 * 108.80746 * 70.47155 * 21 5 4 41 41 H 1.09009 * 108.80845 * 312.20889 * 21 5 4 42 42 H 1.09002 * 113.76317 * 23.26794 * 22 2 1 43 43 H 1.09000 * 113.75945 * 251.89710 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3814 0.0000 4 6 3.0211 0.8793 -1.0361 5 7 3.2515 1.8181 -2.1422 6 6 3.6743 3.1424 -1.6345 7 6 5.1548 3.2242 -1.3798 8 6 5.8370 3.7993 -2.6387 9 6 5.9921 2.7976 -3.6877 10 6 4.6351 2.2387 -4.1647 11 1 3.9133 3.0511 -4.2477 12 6 4.8075 1.5632 -5.5267 13 6 5.1948 2.5957 -6.5540 14 1 5.3071 3.6299 -6.2643 15 6 5.4066 2.2195 -7.8634 16 7 5.7451 3.1203 -8.7599 17 14 5.2129 0.4304 -8.3643 18 1 6.5140 -0.2696 -8.2134 19 1 4.7731 0.3576 -9.7808 20 1 4.1978 -0.2194 -7.4968 21 6 4.1535 1.2302 -3.1577 22 6 1.9993 -0.2246 -1.3630 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.4459 1.6802 0.9482 27 1 1.3022 2.1212 -0.3935 28 1 3.9458 0.5068 -0.5953 29 1 3.1456 3.3472 -0.7036 30 1 3.4010 3.9029 -2.3660 31 1 5.5465 2.2282 -1.1736 32 1 5.3444 3.8789 -0.5290 33 1 6.8210 4.1802 -2.3650 34 1 5.2336 4.6222 -3.0217 35 1 6.5983 1.9762 -3.3056 36 1 6.5063 3.2499 -4.5356 37 1 3.8693 1.0927 -5.8203 38 1 5.5886 0.8059 -5.4604 39 1 5.8937 2.8557 -9.6811 40 1 3.6221 0.4359 -3.6821 41 1 5.0173 0.7979 -2.6524 42 1 1.3011 0.0441 -2.1557 43 1 2.4460 -1.2089 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261001590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:31 Heat of formation + Delta-G solvation = 29.477773 kcal Electronic energy + Delta-G solvation = -19642.308595 eV Core-core repulsion = 16915.972543 eV Total energy + Delta-G solvation = -2726.336052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.30779 -38.39543 -34.26095 -33.21117 -31.90270 -29.74671 -28.33638 -26.29656 -25.82211 -24.10955 -23.18717 -21.38341 -20.55120 -19.07152 -18.78809 -16.79252 -16.40853 -15.86348 -15.49870 -14.84958 -14.48262 -13.97880 -13.81569 -13.70414 -13.31049 -12.80097 -12.73039 -12.52457 -12.21234 -12.06558 -11.85221 -11.75061 -11.56595 -10.98514 -10.94405 -10.80391 -10.57059 -10.44197 -10.35376 -9.85475 -9.73401 -9.62700 -9.37561 -9.06085 -8.95525 -8.50037 -7.98785 -6.01096 -3.97815 3.32514 3.40273 3.44102 3.76868 4.09187 4.38519 4.48109 4.93966 4.98415 5.02471 5.13996 5.23401 5.31782 5.32976 5.37276 5.46706 5.48936 5.54282 5.67174 5.69585 5.74517 5.81874 5.90785 5.93020 6.09481 6.13876 6.16268 6.17958 6.33229 6.45443 6.61626 6.62437 6.84603 6.89085 6.96872 7.11959 7.29190 7.34296 7.37366 7.57781 7.83786 8.58192 9.04370 9.62114 11.12327 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024119 B = 0.005681 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.625939 B = 4927.413828 C = 5789.650150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.489 5.489 3 C 0.010 3.990 4 C 0.055 3.945 5 N -0.540 5.540 6 C 0.061 3.939 7 C -0.147 4.147 8 C -0.112 4.112 9 C -0.116 4.116 10 C -0.070 4.070 11 H 0.073 0.927 12 C -0.006 4.006 13 C -0.512 4.512 14 H 0.073 0.927 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.877 3.123 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.266 1.266 21 C 0.070 3.930 22 C 0.013 3.987 23 H 0.037 0.963 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.043 0.957 36 H 0.082 0.918 37 H 0.017 0.983 38 H 0.009 0.991 39 H 0.262 0.738 40 H 0.068 0.932 41 H 0.027 0.973 42 H 0.081 0.919 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.244 -3.444 17.487 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.211 5.211 3 C -0.119 4.119 4 C -0.054 4.054 5 N -0.265 5.265 6 C -0.066 4.066 7 C -0.186 4.186 8 C -0.149 4.149 9 C -0.154 4.154 10 C -0.089 4.089 11 H 0.091 0.909 12 C -0.043 4.043 13 C -0.550 4.550 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.545 5.545 17 Si 0.705 3.295 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.057 4.057 22 C -0.116 4.116 23 H 0.056 0.944 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.035 0.965 38 H 0.028 0.972 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.099 0.901 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.477 -3.806 17.607 19.143 hybrid contribution 0.407 -0.539 -0.661 0.946 sum -6.069 -4.345 16.946 18.517 Atomic orbital electron populations 1.22830 0.89585 1.02224 1.01086 1.68421 1.09172 1.18576 1.24953 1.24034 0.97202 0.91674 0.99016 1.23466 0.96785 0.93635 0.91521 1.62171 1.49811 1.02499 1.12056 1.21846 0.93833 0.91277 0.99651 1.21917 0.97270 1.01084 0.98302 1.20568 0.99939 0.99281 0.95139 1.20611 0.98100 0.98133 0.98509 1.20831 0.95872 0.97501 0.94666 0.90883 1.19613 0.96239 0.96378 0.92112 1.21120 1.46060 0.95636 0.92163 0.90867 1.25017 0.94754 0.97090 0.96659 1.69914 1.48265 1.33531 1.02769 0.86821 0.78878 0.86165 0.77660 1.20433 1.21519 1.19022 1.21988 0.93555 0.97769 0.92367 1.24071 0.97280 0.99382 0.90890 0.94386 0.91334 0.91618 0.89841 0.90361 0.91315 0.92029 0.90563 0.92236 0.92143 0.93126 0.92123 0.93784 0.89975 0.96478 0.97226 0.92853 0.91396 0.95517 0.90063 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.65 60.07 0.58 0.50 16 2 N -0.49 -5.60 6.56 -246.73 -1.62 -7.22 16 3 C 0.01 0.11 6.15 -2.76 -0.02 0.09 16 4 C 0.06 0.69 3.30 -69.40 -0.23 0.46 16 5 N -0.54 -7.68 4.66 -229.31 -1.07 -8.75 16 6 C 0.06 0.80 5.05 -4.49 -0.02 0.78 16 7 C -0.15 -1.89 5.60 -27.32 -0.15 -2.04 16 8 C -0.11 -1.67 5.30 -29.42 -0.16 -1.83 16 9 C -0.12 -2.10 4.63 -29.42 -0.14 -2.23 16 10 C -0.07 -1.35 1.83 -91.21 -0.17 -1.52 16 11 H 0.07 1.50 7.10 -51.93 -0.37 1.13 16 12 C -0.01 -0.13 3.34 -27.88 -0.09 -0.22 16 13 C -0.51 -14.25 8.70 -34.44 -0.30 -14.55 16 14 H 0.07 2.19 7.48 -52.49 -0.39 1.80 16 15 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 16 N -0.91 -27.82 13.96 55.43 0.77 -27.05 16 17 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 21 C 0.07 1.15 4.45 -4.49 -0.02 1.13 16 22 C 0.01 0.15 7.64 -2.76 -0.02 0.13 16 23 H 0.04 0.37 7.62 -51.93 -0.40 -0.03 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.86 7.82 -51.93 -0.41 0.45 16 28 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 29 H 0.06 0.69 6.46 -51.93 -0.34 0.36 16 30 H 0.08 1.09 6.59 -51.93 -0.34 0.75 16 31 H 0.06 0.81 7.00 -51.93 -0.36 0.44 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.93 7.51 -51.93 -0.39 0.54 16 35 H 0.04 0.77 7.52 -51.93 -0.39 0.38 16 36 H 0.08 1.72 6.64 -51.93 -0.34 1.38 16 37 H 0.02 0.41 7.05 -51.93 -0.37 0.04 16 38 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 40 H 0.07 1.16 7.61 -51.93 -0.40 0.76 16 41 H 0.03 0.43 6.45 -51.92 -0.33 0.10 16 42 H 0.08 1.02 7.62 -51.93 -0.40 0.63 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 317.79 15.07 4.79 4.79 Total: -1.00 -29.32 317.79 -10.36 -39.68 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.74 Total: -1.02 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.83 Total: -17.52 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -1.91 Total: -43.02 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.32 -10.36 -39.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261001590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.162 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds