Wall clock time and date at job start Mon Mar 30 2020 03:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47964 * 111.00002 * 2 1 4 4 C 1.53937 * 86.17991 * 222.41816 * 3 2 1 5 5 N 1.46903 * 113.73248 * 138.07851 * 4 3 2 6 6 C 1.47998 * 110.99794 * 56.04503 * 5 4 3 7 7 C 1.50452 * 112.82196 * 84.83994 * 6 5 4 8 8 C 1.54300 * 108.49303 * 93.73076 * 7 6 5 9 9 C 1.45874 * 112.19648 * 281.45137 * 8 7 6 10 10 C 1.54309 * 112.17948 * 61.11694 * 9 8 7 11 11 H 1.08996 * 109.63516 * 41.38838 * 10 9 8 12 12 C 1.53000 * 109.63506 * 161.78014 * 10 9 8 13 13 C 1.50708 * 109.46973 * 295.00190 * 12 10 9 14 14 H 1.07991 * 119.99789 * 0.02562 * 13 12 10 15 15 C 1.37877 * 120.00008 * 179.97438 * 13 12 10 16 16 N 1.31514 * 120.00089 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 C 1.48001 * 111.00165 * 184.76315 * 5 4 3 22 22 C 1.47963 * 111.00044 * 260.64047 * 2 1 3 23 23 H 1.09003 * 109.47102 * 60.00298 * 1 2 3 24 24 H 1.09006 * 109.46682 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46834 * 299.99925 * 1 2 3 26 26 H 1.08991 * 113.75733 * 108.09900 * 3 2 1 27 27 H 1.09000 * 113.85725 * 336.75006 * 3 2 1 28 28 H 1.08999 * 113.73403 * 269.25728 * 4 3 2 29 29 H 1.09002 * 108.81806 * 323.97989 * 6 5 4 30 30 H 1.08997 * 108.81573 * 205.69641 * 6 5 4 31 31 H 1.09001 * 109.63173 * 334.03075 * 7 6 5 32 32 H 1.09006 * 109.63175 * 213.43528 * 7 6 5 33 33 H 1.09006 * 108.93451 * 160.75441 * 8 7 6 34 34 H 1.08997 * 108.86697 * 42.11001 * 8 7 6 35 35 H 1.09004 * 108.93906 * 300.42479 * 9 8 7 36 36 H 1.08998 * 108.94332 * 181.81650 * 9 8 7 37 37 H 1.08994 * 109.48028 * 175.00247 * 12 10 9 38 38 H 1.09000 * 109.47206 * 55.00102 * 12 10 9 39 39 H 0.96997 * 119.99848 * 180.02562 * 16 15 13 40 40 H 1.09000 * 108.80746 * 70.47155 * 21 5 4 41 41 H 1.09009 * 108.80845 * 312.20889 * 21 5 4 42 42 H 1.09002 * 113.76317 * 23.26794 * 22 2 1 43 43 H 1.09000 * 113.75945 * 251.89710 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3814 0.0000 4 6 3.0211 0.8793 -1.0361 5 7 3.2515 1.8181 -2.1422 6 6 3.6743 3.1424 -1.6345 7 6 5.1548 3.2242 -1.3798 8 6 5.8370 3.7993 -2.6387 9 6 5.9921 2.7976 -3.6877 10 6 4.6351 2.2387 -4.1647 11 1 3.9133 3.0511 -4.2477 12 6 4.8075 1.5632 -5.5267 13 6 5.1948 2.5957 -6.5540 14 1 5.3071 3.6299 -6.2643 15 6 5.4066 2.2195 -7.8634 16 7 5.7451 3.1203 -8.7599 17 14 5.2129 0.4304 -8.3643 18 1 6.5140 -0.2696 -8.2134 19 1 4.7731 0.3576 -9.7808 20 1 4.1978 -0.2194 -7.4968 21 6 4.1535 1.2302 -3.1577 22 6 1.9993 -0.2246 -1.3630 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.4459 1.6802 0.9482 27 1 1.3022 2.1212 -0.3935 28 1 3.9458 0.5068 -0.5953 29 1 3.1456 3.3472 -0.7036 30 1 3.4010 3.9029 -2.3660 31 1 5.5465 2.2282 -1.1736 32 1 5.3444 3.8789 -0.5290 33 1 6.8210 4.1802 -2.3650 34 1 5.2336 4.6222 -3.0217 35 1 6.5983 1.9762 -3.3056 36 1 6.5063 3.2499 -4.5356 37 1 3.8693 1.0927 -5.8203 38 1 5.5886 0.8059 -5.4604 39 1 5.8937 2.8557 -9.6811 40 1 3.6221 0.4359 -3.6821 41 1 5.0173 0.7979 -2.6524 42 1 1.3011 0.0441 -2.1557 43 1 2.4460 -1.2089 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261001590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:31 Heat of formation + Delta-G solvation = 8.688605 kcal Electronic energy + Delta-G solvation = -19643.210081 eV Core-core repulsion = 16915.972543 eV Total energy + Delta-G solvation = -2727.237538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.31121 -39.60514 -35.82244 -34.61851 -33.75608 -30.66006 -30.04283 -27.25822 -27.17725 -25.36976 -24.39163 -22.99295 -21.66567 -20.48494 -19.92165 -18.88128 -17.48058 -16.79648 -16.71585 -16.25810 -15.88408 -15.32232 -15.20792 -14.96734 -14.60639 -14.36364 -13.78193 -13.71744 -13.59979 -13.37722 -13.35376 -13.11415 -12.66225 -12.52017 -12.27008 -11.98016 -11.85107 -11.82052 -11.64950 -11.49810 -11.31294 -11.20247 -11.01596 -10.88434 -10.69946 -9.84446 -9.10099 -8.25462 -6.27170 1.35756 1.37729 1.49400 2.38099 2.78749 3.10009 3.12054 3.44487 3.83831 3.89918 4.08476 4.13362 4.21349 4.26131 4.30632 4.40554 4.51833 4.53237 4.60489 4.62864 4.71817 4.78487 4.80052 4.86354 4.91791 4.99059 5.00202 5.07416 5.13367 5.20086 5.26263 5.33198 5.39909 5.43402 5.48397 5.59837 5.68916 5.75130 6.05089 6.22712 6.29130 6.35631 6.79749 7.36190 8.91297 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024119 B = 0.005681 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.625939 B = 4927.413828 C = 5789.650150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.497 5.497 3 C 0.018 3.982 4 C 0.054 3.946 5 N -0.547 5.547 6 C 0.060 3.940 7 C -0.135 4.135 8 C -0.112 4.112 9 C -0.108 4.108 10 C -0.063 4.063 11 H 0.055 0.945 12 C -0.002 4.002 13 C -0.514 4.514 14 H 0.035 0.965 15 C 0.003 3.997 16 N -0.954 5.954 17 Si 0.945 3.055 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.248 1.248 21 C 0.081 3.919 22 C 0.012 3.988 23 H 0.035 0.965 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.041 0.959 37 H 0.016 0.984 38 H 0.015 0.985 39 H 0.264 0.736 40 H 0.062 0.938 41 H 0.034 0.966 42 H 0.073 0.927 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.909 -5.008 19.826 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.219 5.219 3 C -0.111 4.111 4 C -0.055 4.055 5 N -0.272 5.272 6 C -0.067 4.067 7 C -0.174 4.174 8 C -0.149 4.149 9 C -0.146 4.146 10 C -0.082 4.082 11 H 0.073 0.927 12 C -0.040 4.040 13 C -0.552 4.552 14 H 0.053 0.947 15 C -0.193 4.193 16 N -0.595 5.595 17 Si 0.769 3.231 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.171 1.171 21 C -0.046 4.046 22 C -0.117 4.117 23 H 0.053 0.947 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.116 0.884 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.091 0.909 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.152 -5.370 19.975 21.886 hybrid contribution 0.609 0.043 -1.375 1.505 sum -6.543 -5.327 18.600 20.424 Atomic orbital electron populations 1.22863 0.88508 1.02792 1.01543 1.68428 1.10326 1.18899 1.24273 1.24026 0.96477 0.91490 0.99059 1.23519 0.97172 0.93544 0.91270 1.62096 1.49084 1.03303 1.12697 1.21882 0.94398 0.90189 1.00217 1.21831 0.96527 1.01401 0.97646 1.20523 1.00907 0.98099 0.95377 1.20515 0.97004 0.98963 0.98073 1.20655 0.96339 0.97468 0.93716 0.92680 1.19558 0.95909 0.95399 0.93165 1.21409 1.45281 0.95095 0.93463 0.94719 1.25956 0.94588 1.02061 0.96701 1.70069 1.50063 1.36091 1.03295 0.85735 0.79656 0.80247 0.77477 1.19317 1.21230 1.17135 1.21687 0.94134 0.96444 0.92333 1.24046 0.97128 0.99381 0.91153 0.94661 0.90795 0.90396 0.88366 0.90292 0.91242 0.89525 0.92237 0.92275 0.89484 0.91882 0.93102 0.92873 0.93998 0.96592 0.96666 0.92723 0.91965 0.94785 0.90890 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.13 9.65 127.69 1.23 1.10 16 2 N -0.50 -10.08 6.56 -934.53 -6.13 -16.20 16 3 C 0.02 0.34 6.15 86.41 0.53 0.87 16 4 C 0.05 1.20 3.30 46.48 0.15 1.35 16 5 N -0.55 -14.52 4.66 -879.40 -4.09 -18.61 16 6 C 0.06 1.44 5.05 85.27 0.43 1.87 16 7 C -0.14 -3.12 5.60 30.21 0.17 -2.95 16 8 C -0.11 -3.25 5.30 28.85 0.15 -3.10 16 9 C -0.11 -3.93 4.63 28.85 0.13 -3.80 16 10 C -0.06 -2.44 1.83 -11.18 -0.02 -2.46 16 11 H 0.05 2.32 7.10 -2.39 -0.02 2.30 16 12 C 0.00 -0.12 3.34 29.85 0.10 -0.02 16 13 C -0.51 -29.64 8.70 25.60 0.22 -29.42 16 14 H 0.03 2.20 7.48 -2.92 -0.02 2.18 16 15 C 0.00 0.18 5.47 84.65 0.46 0.64 16 16 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 17 Si 0.94 44.89 27.47 68.60 1.88 46.78 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 21 C 0.08 2.55 4.45 85.26 0.38 2.93 16 22 C 0.01 0.27 7.64 86.41 0.66 0.93 16 23 H 0.03 0.61 7.62 -2.39 -0.02 0.59 16 24 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.08 1.49 7.82 -2.39 -0.02 1.47 16 28 H 0.07 1.58 8.09 -2.39 -0.02 1.56 16 29 H 0.09 1.66 6.46 -2.39 -0.02 1.64 16 30 H 0.06 1.64 6.59 -2.39 -0.02 1.62 16 31 H 0.06 1.41 7.00 -2.39 -0.02 1.39 16 32 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.05 1.57 7.51 -2.39 -0.02 1.56 16 35 H 0.05 1.81 7.52 -2.38 -0.02 1.79 16 36 H 0.04 1.84 6.64 -2.39 -0.02 1.82 16 37 H 0.02 0.75 7.05 -2.39 -0.02 0.73 16 38 H 0.02 0.69 7.57 -2.39 -0.02 0.68 16 39 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 40 H 0.06 2.03 7.61 -2.39 -0.02 2.02 16 41 H 0.03 1.03 6.45 -2.38 -0.02 1.01 16 42 H 0.07 1.73 7.62 -2.39 -0.02 1.71 16 43 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -64.45 317.79 -2.53 -66.98 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.90 Total: 13.29 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 4.61 Total: -32.05 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -9.92 Total: -95.00 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.78 kcal Total: -64.45 -2.53 -66.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261001590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.669 kcal (2) G-P(sol) polarization free energy of solvation -64.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds