Wall clock time and date at job start Mon Mar 30 2020 03:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47961 * 111.00005 * 2 1 4 4 C 1.53934 * 86.17939 * 137.58072 * 3 2 1 5 5 C 1.52996 * 113.73324 * 221.81496 * 4 3 2 6 6 N 1.46902 * 109.47151 * 183.10211 * 5 4 3 7 7 C 1.46848 * 111.00052 * 66.04765 * 6 5 4 8 8 C 1.53039 * 109.51990 * 185.84177 * 7 6 5 9 9 C 1.53117 * 109.27869 * 300.81452 * 8 7 6 10 10 C 1.53121 * 109.15599 * 57.66293 * 9 8 7 11 11 H 1.08998 * 109.50687 * 62.28389 * 10 9 8 12 12 C 1.53005 * 109.50179 * 182.36452 * 10 9 8 13 13 C 1.50702 * 109.46856 * 294.99771 * 12 10 9 14 14 H 1.08006 * 120.00177 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99862 * 179.97438 * 13 12 10 16 16 N 1.31512 * 120.00057 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99983 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46864 * 60.00314 * 17 15 13 19 19 H 1.48499 * 109.47264 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47314 * 300.00421 * 17 15 13 21 21 C 1.46850 * 111.00167 * 190.25929 * 6 5 4 22 22 C 1.48296 * 111.00409 * 99.35301 * 2 1 3 23 23 H 1.09001 * 109.46954 * 59.99974 * 1 2 3 24 24 H 1.09001 * 109.47223 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47582 * 300.00187 * 1 2 3 26 26 H 1.09007 * 113.75652 * 23.26342 * 3 2 1 27 27 H 1.08993 * 113.76177 * 251.90248 * 3 2 1 28 28 H 1.09002 * 113.73279 * 90.64057 * 4 3 2 29 29 H 1.09002 * 109.47437 * 303.10225 * 5 4 3 30 30 H 1.09006 * 109.47170 * 63.10150 * 5 4 3 31 31 H 1.08997 * 109.45658 * 305.85345 * 7 6 5 32 32 H 1.08996 * 109.45921 * 65.83531 * 7 6 5 33 33 H 1.08994 * 109.50558 * 60.76256 * 8 7 6 34 34 H 1.09004 * 109.49916 * 180.83732 * 8 7 6 35 35 H 1.08997 * 109.52034 * 177.55896 * 9 8 7 36 36 H 1.08990 * 109.52608 * 297.75743 * 9 8 7 37 37 H 1.08999 * 109.47021 * 54.99761 * 12 10 9 38 38 H 1.08996 * 109.47334 * 175.00079 * 12 10 9 39 39 H 0.97005 * 119.99621 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.45790 * 294.17840 * 21 6 5 41 41 H 1.08997 * 109.46152 * 54.14174 * 21 6 5 42 42 H 1.09001 * 113.86054 * 108.14174 * 22 2 1 43 43 H 1.09000 * 113.76062 * 336.68481 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 1.0361 5 6 3.2629 1.8581 2.1868 6 7 4.3024 1.3217 3.0756 7 6 5.5999 1.2602 2.3908 8 6 6.6218 0.5647 3.2930 9 6 6.7522 1.3448 4.6041 10 6 5.3780 1.4359 5.2734 11 1 5.0247 0.4340 5.5170 12 6 5.4880 2.2645 6.5550 13 6 6.3663 1.5439 7.5452 14 1 6.8021 0.5902 7.2865 15 6 6.6134 2.1022 8.7814 16 7 6.0823 3.2633 9.0966 17 14 7.7015 1.2088 10.0090 18 1 9.0534 1.0177 9.4249 19 1 7.8094 2.0135 11.2524 20 1 7.1075 -0.1149 10.3255 21 6 4.3921 2.1061 4.3138 22 6 2.0006 -0.2250 1.3660 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.3009 2.1198 0.3941 27 1 2.4459 1.6803 -0.9482 28 1 3.9451 0.5051 0.5952 29 1 3.5881 2.8178 1.7852 30 1 2.3388 1.9937 2.7488 31 1 5.4942 0.6993 1.4622 32 1 5.9411 2.2711 2.1677 33 1 6.2881 -0.4509 3.5055 34 1 7.5886 0.5325 2.7904 35 1 7.4468 0.8292 5.2672 36 1 7.1231 2.3483 4.3956 37 1 5.9234 3.2364 6.3230 38 1 4.4956 2.4039 6.9837 39 1 6.2560 3.6559 9.9665 40 1 4.7389 3.1130 4.0814 41 1 3.4092 2.1596 4.7818 42 1 2.4484 -1.2085 1.5084 43 1 1.3027 0.0446 2.1587 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261004703.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:37 Heat of formation + Delta-G solvation = 19.208952 kcal Electronic energy + Delta-G solvation = -19032.307134 eV Core-core repulsion = 16305.525793 eV Total energy + Delta-G solvation = -2726.781341 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.16947 -38.41718 -34.40026 -32.62024 -31.02741 -30.67466 -27.14462 -26.36638 -26.20366 -23.83541 -22.79949 -21.91709 -20.52573 -19.43081 -18.85661 -16.28925 -16.22326 -15.57241 -15.45813 -14.84178 -14.47727 -14.35450 -13.84446 -13.57094 -13.26387 -13.07746 -12.83478 -12.57804 -12.07787 -11.91273 -11.70354 -11.56347 -11.34157 -11.06681 -10.83863 -10.68370 -10.66959 -10.55939 -10.41776 -10.12074 -9.92903 -9.51847 -9.08357 -9.00484 -8.87545 -8.31396 -7.98286 -5.96624 -3.97791 3.35299 3.39612 3.42180 3.80508 4.00001 4.47668 4.51301 4.71373 4.91842 5.10085 5.19168 5.29313 5.32705 5.37298 5.39658 5.40746 5.49604 5.54306 5.61323 5.64152 5.74598 5.79744 5.83034 5.94014 6.09312 6.11750 6.13362 6.22897 6.32018 6.38129 6.58632 6.63487 6.86258 7.02548 7.11396 7.15241 7.43014 7.49516 7.70770 7.86699 8.03681 8.47592 9.08393 9.65595 11.14888 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.039862 B = 0.003926 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.259068 B = 7130.084216 C = 7356.636704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.490 5.490 3 C 0.003 3.997 4 C -0.108 4.108 5 C 0.063 3.937 6 N -0.536 5.536 7 C 0.058 3.942 8 C -0.118 4.118 9 C -0.105 4.105 10 C -0.075 4.075 11 H 0.064 0.936 12 C 0.028 3.972 13 C -0.513 4.513 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.062 3.938 22 C 0.016 3.984 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.014 0.986 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.026 0.974 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.144 -3.565 -17.158 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.212 5.212 3 C -0.127 4.127 4 C -0.127 4.127 5 C -0.066 4.066 6 N -0.260 5.260 7 C -0.070 4.070 8 C -0.156 4.156 9 C -0.143 4.143 10 C -0.094 4.094 11 H 0.083 0.917 12 C -0.009 4.009 13 C -0.551 4.551 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.065 4.065 22 C -0.112 4.112 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.150 -4.365 -17.424 19.333 hybrid contribution 0.376 1.022 1.187 1.611 sum -6.774 -3.343 -16.237 17.909 Atomic orbital electron populations 1.22846 0.89983 1.02287 1.00859 1.68550 1.08831 1.18419 1.25439 1.23987 0.97199 0.91528 0.99946 1.23007 0.98403 0.96152 0.95138 1.22100 0.96021 0.95170 0.93319 1.61952 1.05437 1.53181 1.05415 1.22096 0.89394 0.98717 0.96812 1.21645 0.97029 1.00149 0.96757 1.21538 0.98588 0.99308 0.94845 1.21235 0.92650 1.00188 0.95317 0.91734 1.19104 0.96932 0.94743 0.90164 1.21198 1.29482 1.05451 0.98976 0.92599 1.25016 0.96194 0.94988 0.98311 1.69957 1.44746 1.17167 1.21853 0.86694 0.81154 0.79721 0.80647 1.20297 1.21403 1.20260 1.22258 1.00410 0.94291 0.89522 1.24026 0.96589 1.00619 0.90008 0.91654 0.91270 0.94719 0.91332 0.89588 0.88110 0.94947 0.91025 0.91464 0.95529 0.91609 0.92541 0.91136 0.93236 0.96802 0.96700 0.93057 0.95523 0.91459 0.89267 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.65 60.07 0.58 0.49 16 2 N -0.49 -5.21 6.56 -246.29 -1.62 -6.83 16 3 C 0.00 0.03 7.55 -2.76 -0.02 0.01 16 4 C -0.11 -1.16 3.86 -89.69 -0.35 -1.51 16 5 C 0.06 0.77 4.80 -3.83 -0.02 0.75 16 6 N -0.54 -7.99 4.65 -234.67 -1.09 -9.08 16 7 C 0.06 0.81 5.31 -3.83 -0.02 0.79 16 8 C -0.12 -1.79 6.09 -26.65 -0.16 -1.96 16 9 C -0.11 -1.98 5.05 -26.61 -0.13 -2.11 16 10 C -0.08 -1.54 2.30 -90.54 -0.21 -1.75 16 11 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 12 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 13 C -0.51 -14.32 8.44 -34.44 -0.29 -14.61 16 14 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 17 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.06 1.10 4.74 -3.83 -0.02 1.08 16 22 C 0.02 0.17 7.54 -2.57 -0.02 0.15 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.03 0.29 7.63 -51.93 -0.40 -0.10 16 26 H 0.07 0.61 7.88 -51.92 -0.41 0.20 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 1.13 6.21 -51.93 -0.32 0.81 16 29 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.07 0.87 7.72 -51.93 -0.40 0.47 16 31 H 0.07 0.83 6.11 -51.93 -0.32 0.51 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.43 7.03 -51.93 -0.37 1.06 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 1.18 8.01 -51.93 -0.42 0.77 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 0.77 7.40 -51.93 -0.38 0.39 16 LS Contribution 329.80 15.07 4.97 4.97 Total: -1.00 -29.40 329.80 -10.92 -40.32 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -8.01 Total: -3.20 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -0.88 Total: -16.59 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: -1.97 Total: -42.18 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.40 -10.92 -40.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261004703.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.528 kcal (2) G-P(sol) polarization free energy of solvation -29.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds