Wall clock time and date at job start Mon Mar 30 2020 03:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47961 * 111.00005 * 2 1 4 4 C 1.53934 * 86.17939 * 137.58072 * 3 2 1 5 5 C 1.52996 * 113.73324 * 221.81496 * 4 3 2 6 6 N 1.46902 * 109.47151 * 183.10211 * 5 4 3 7 7 C 1.46848 * 111.00052 * 66.04765 * 6 5 4 8 8 C 1.53039 * 109.51990 * 185.84177 * 7 6 5 9 9 C 1.53117 * 109.27869 * 300.81452 * 8 7 6 10 10 C 1.53121 * 109.15599 * 57.66293 * 9 8 7 11 11 H 1.08998 * 109.50687 * 62.28389 * 10 9 8 12 12 C 1.53005 * 109.50179 * 182.36452 * 10 9 8 13 13 C 1.50702 * 109.46856 * 294.99771 * 12 10 9 14 14 H 1.08006 * 120.00177 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99862 * 179.97438 * 13 12 10 16 16 N 1.31512 * 120.00057 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99983 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46864 * 60.00314 * 17 15 13 19 19 H 1.48499 * 109.47264 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47314 * 300.00421 * 17 15 13 21 21 C 1.46850 * 111.00167 * 190.25929 * 6 5 4 22 22 C 1.48296 * 111.00409 * 99.35301 * 2 1 3 23 23 H 1.09001 * 109.46954 * 59.99974 * 1 2 3 24 24 H 1.09001 * 109.47223 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47582 * 300.00187 * 1 2 3 26 26 H 1.09007 * 113.75652 * 23.26342 * 3 2 1 27 27 H 1.08993 * 113.76177 * 251.90248 * 3 2 1 28 28 H 1.09002 * 113.73279 * 90.64057 * 4 3 2 29 29 H 1.09002 * 109.47437 * 303.10225 * 5 4 3 30 30 H 1.09006 * 109.47170 * 63.10150 * 5 4 3 31 31 H 1.08997 * 109.45658 * 305.85345 * 7 6 5 32 32 H 1.08996 * 109.45921 * 65.83531 * 7 6 5 33 33 H 1.08994 * 109.50558 * 60.76256 * 8 7 6 34 34 H 1.09004 * 109.49916 * 180.83732 * 8 7 6 35 35 H 1.08997 * 109.52034 * 177.55896 * 9 8 7 36 36 H 1.08990 * 109.52608 * 297.75743 * 9 8 7 37 37 H 1.08999 * 109.47021 * 54.99761 * 12 10 9 38 38 H 1.08996 * 109.47334 * 175.00079 * 12 10 9 39 39 H 0.97005 * 119.99621 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.45790 * 294.17840 * 21 6 5 41 41 H 1.08997 * 109.46152 * 54.14174 * 21 6 5 42 42 H 1.09001 * 113.86054 * 108.14174 * 22 2 1 43 43 H 1.09000 * 113.76062 * 336.68481 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 1.0361 5 6 3.2629 1.8581 2.1868 6 7 4.3024 1.3217 3.0756 7 6 5.5999 1.2602 2.3908 8 6 6.6218 0.5647 3.2930 9 6 6.7522 1.3448 4.6041 10 6 5.3780 1.4359 5.2734 11 1 5.0247 0.4340 5.5170 12 6 5.4880 2.2645 6.5550 13 6 6.3663 1.5439 7.5452 14 1 6.8021 0.5902 7.2865 15 6 6.6134 2.1022 8.7814 16 7 6.0823 3.2633 9.0966 17 14 7.7015 1.2088 10.0090 18 1 9.0534 1.0177 9.4249 19 1 7.8094 2.0135 11.2524 20 1 7.1075 -0.1149 10.3255 21 6 4.3921 2.1061 4.3138 22 6 2.0006 -0.2250 1.3660 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.3009 2.1198 0.3941 27 1 2.4459 1.6803 -0.9482 28 1 3.9451 0.5051 0.5952 29 1 3.5881 2.8178 1.7852 30 1 2.3388 1.9937 2.7488 31 1 5.4942 0.6993 1.4622 32 1 5.9411 2.2711 2.1677 33 1 6.2881 -0.4509 3.5055 34 1 7.5886 0.5325 2.7904 35 1 7.4468 0.8292 5.2672 36 1 7.1231 2.3483 4.3956 37 1 5.9234 3.2364 6.3230 38 1 4.4956 2.4039 6.9837 39 1 6.2560 3.6559 9.9665 40 1 4.7389 3.1130 4.0814 41 1 3.4092 2.1596 4.7818 42 1 2.4484 -1.2085 1.5084 43 1 1.3027 0.0446 2.1587 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261004703.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:37 Heat of formation + Delta-G solvation = -0.557124 kcal Electronic energy + Delta-G solvation = -19033.164256 eV Core-core repulsion = 16305.525793 eV Total energy + Delta-G solvation = -2727.638463 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.05428 -39.70541 -36.02477 -34.38198 -32.62044 -31.63520 -28.85185 -27.53675 -26.99616 -25.45051 -24.18966 -23.12877 -21.84910 -20.43760 -20.29960 -18.45017 -17.21901 -16.62800 -16.43618 -16.37574 -15.74776 -15.58158 -15.06127 -14.97613 -14.71458 -14.19643 -14.06465 -13.78725 -13.60864 -13.43500 -13.06435 -12.86279 -12.57604 -12.53139 -12.30045 -12.14447 -12.06256 -11.87120 -11.59178 -11.57197 -11.35338 -11.23905 -10.87071 -10.72921 -10.51058 -9.77062 -9.18552 -8.17299 -6.26536 1.40258 1.43053 1.50690 2.42140 2.89989 3.03291 3.16013 3.63161 3.79350 4.01606 4.11589 4.12899 4.21155 4.33892 4.36367 4.44828 4.51974 4.57688 4.60320 4.67552 4.69721 4.72211 4.78631 4.82618 4.90982 4.96492 4.98884 5.02286 5.07442 5.18064 5.31834 5.36988 5.38862 5.42836 5.50749 5.58868 5.80288 5.89717 6.10355 6.15642 6.26717 6.33427 6.88989 7.41729 8.94639 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.039862 B = 0.003926 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.259068 B = 7130.084216 C = 7356.636704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.504 5.504 3 C 0.010 3.990 4 C -0.102 4.102 5 C 0.065 3.935 6 N -0.540 5.540 7 C 0.058 3.942 8 C -0.110 4.110 9 C -0.102 4.102 10 C -0.067 4.067 11 H 0.054 0.946 12 C 0.034 3.966 13 C -0.529 4.529 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.936 5.936 17 Si 0.961 3.039 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.268 1.268 21 C 0.073 3.927 22 C 0.014 3.986 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.027 0.973 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.040 0.960 37 H -0.013 1.013 38 H -0.013 1.013 39 H 0.262 0.738 40 H 0.019 0.981 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.888 -4.586 -18.679 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.226 5.226 3 C -0.119 4.119 4 C -0.121 4.121 5 C -0.063 4.063 6 N -0.264 5.264 7 C -0.069 4.069 8 C -0.147 4.147 9 C -0.140 4.140 10 C -0.086 4.086 11 H 0.073 0.927 12 C -0.003 4.003 13 C -0.567 4.567 14 H 0.078 0.922 15 C -0.199 4.199 16 N -0.577 5.577 17 Si 0.785 3.215 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.193 1.193 21 C -0.054 4.054 22 C -0.114 4.114 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.006 0.994 38 H 0.005 0.995 39 H 0.071 0.929 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.899 -5.398 -18.970 20.895 hybrid contribution 0.254 1.360 1.643 2.148 sum -6.645 -4.038 -17.327 18.991 Atomic orbital electron populations 1.22877 0.89001 1.02671 1.01470 1.68540 1.09957 1.19129 1.24991 1.24001 0.96708 0.91271 0.99970 1.22936 0.98661 0.95745 0.94776 1.22138 0.95013 0.95839 0.93284 1.61914 1.06691 1.52682 1.05101 1.22154 0.88439 0.99033 0.97291 1.21584 0.98869 0.99375 0.94900 1.21455 0.96666 0.99306 0.96524 1.21027 0.94900 0.98654 0.94013 0.92749 1.18982 0.94685 0.94233 0.92412 1.21596 1.29656 1.05735 0.99722 0.92150 1.25947 0.97675 0.95770 1.00499 1.70096 1.46241 1.18815 1.22503 0.85568 0.79405 0.78596 0.77903 1.19177 1.21014 1.19257 1.21976 0.99083 0.93880 0.90511 1.24004 0.96734 1.00326 0.90364 0.90628 0.91083 0.94492 0.90545 0.88579 0.88095 0.94373 0.91091 0.88812 0.95483 0.91628 0.90131 0.93044 0.94067 0.99431 0.99490 0.92934 0.96227 0.91889 0.89906 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.18 9.65 127.69 1.23 1.06 16 2 N -0.50 -9.64 6.56 -933.13 -6.12 -15.76 16 3 C 0.01 0.16 7.55 86.41 0.65 0.81 16 4 C -0.10 -1.96 3.86 -10.15 -0.04 -2.00 16 5 C 0.07 1.48 4.80 86.30 0.41 1.90 16 6 N -0.54 -15.33 4.65 -896.35 -4.17 -19.50 16 7 C 0.06 1.50 5.31 86.33 0.46 1.96 16 8 C -0.11 -3.12 6.09 30.65 0.19 -2.93 16 9 C -0.10 -3.83 5.05 30.67 0.15 -3.67 16 10 C -0.07 -2.81 2.30 -10.74 -0.02 -2.84 16 11 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 12 C 0.03 1.84 4.45 29.85 0.13 1.97 16 13 C -0.53 -30.23 8.44 25.60 0.22 -30.01 16 14 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 15 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 16 N -0.94 -57.65 13.29 21.45 0.28 -57.36 16 17 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 21 C 0.07 2.60 4.74 86.32 0.41 3.01 16 22 C 0.01 0.29 7.54 86.34 0.65 0.94 16 23 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.04 0.56 7.63 -2.39 -0.02 0.54 16 26 H 0.08 1.15 7.88 -2.38 -0.02 1.13 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.10 1.97 6.21 -2.39 -0.01 1.95 16 29 H 0.04 0.84 8.12 -2.39 -0.02 0.82 16 30 H 0.07 1.63 7.72 -2.38 -0.02 1.61 16 31 H 0.09 1.98 6.11 -2.39 -0.01 1.96 16 32 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 35 H 0.05 2.10 7.03 -2.39 -0.02 2.08 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H -0.01 -0.74 8.14 -2.39 -0.02 -0.75 16 38 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 41 H 0.06 2.25 8.01 -2.39 -0.02 2.23 16 42 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.07 1.41 7.40 -2.39 -0.02 1.39 16 Total: -1.00 -63.73 329.80 -2.14 -65.87 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.94 Total: 9.44 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 4.91 Total: -29.45 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -10.01 Total: -92.62 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.73 -2.14 -65.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261004703.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.313 kcal (2) G-P(sol) polarization free energy of solvation -63.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds