Wall clock time and date at job start Mon Mar 30 2020 03:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47954 * 110.99548 * 2 1 4 4 C 1.53936 * 86.17978 * 222.41598 * 3 2 1 5 5 C 1.53003 * 113.73328 * 138.08050 * 4 3 2 6 6 N 1.46895 * 109.47172 * 175.00049 * 5 4 3 7 7 C 1.46842 * 111.00517 * 294.21342 * 6 5 4 8 8 C 1.53031 * 109.52715 * 174.16241 * 7 6 5 9 9 C 1.53121 * 109.31315 * 59.15479 * 8 7 6 10 10 C 1.53114 * 109.15908 * 302.40898 * 9 8 7 11 11 H 1.09000 * 109.50566 * 297.63033 * 10 9 8 12 12 C 1.53006 * 109.50497 * 177.55530 * 10 9 8 13 13 C 1.50699 * 109.47053 * 65.07517 * 12 10 9 14 14 H 1.07995 * 119.99640 * 0.02562 * 13 12 10 15 15 C 1.37872 * 119.99593 * 179.97438 * 13 12 10 16 16 N 1.31519 * 119.99662 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00357 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47022 * 89.99750 * 17 15 13 19 19 H 1.48503 * 109.47348 * 209.99668 * 17 15 13 20 20 H 1.48495 * 109.47001 * 329.99850 * 17 15 13 21 21 C 1.46851 * 110.99941 * 170.00067 * 6 5 4 22 22 C 1.47959 * 110.99613 * 260.64508 * 2 1 3 23 23 H 1.08998 * 109.47693 * 59.99884 * 1 2 3 24 24 H 1.09002 * 109.47219 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47352 * 299.99625 * 1 2 3 26 26 H 1.09007 * 113.75663 * 108.10370 * 3 2 1 27 27 H 1.08994 * 113.86688 * 336.75256 * 3 2 1 28 28 H 1.09002 * 113.73887 * 269.26197 * 4 3 2 29 29 H 1.09008 * 109.46784 * 55.00161 * 5 4 3 30 30 H 1.09000 * 109.47047 * 295.00564 * 5 4 3 31 31 H 1.09010 * 109.45833 * 294.17805 * 7 6 5 32 32 H 1.09000 * 109.46361 * 54.15278 * 7 6 5 33 33 H 1.08993 * 109.50736 * 179.12109 * 8 7 6 34 34 H 1.09006 * 109.50212 * 299.19543 * 8 7 6 35 35 H 1.08998 * 109.55718 * 182.48278 * 9 8 7 36 36 H 1.09001 * 109.49206 * 62.28938 * 9 8 7 37 37 H 1.08997 * 109.47395 * 185.08123 * 12 10 9 38 38 H 1.09004 * 109.46579 * 305.07400 * 12 10 9 39 39 H 0.96999 * 119.99661 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.46176 * 65.82754 * 21 6 5 41 41 H 1.09004 * 109.46385 * 305.85750 * 21 6 5 42 42 H 1.08996 * 113.76721 * 23.25974 * 22 2 1 43 43 H 1.09004 * 113.75689 * 251.89896 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3813 0.0000 4 6 3.0210 0.8793 -1.0360 5 6 3.2610 1.8571 -2.1881 6 7 4.3322 1.3428 -3.0517 7 6 5.6153 1.3138 -2.3381 8 6 6.6731 0.6401 -3.2151 9 6 6.8145 1.4183 -4.5262 10 6 5.4536 1.4759 -5.2255 11 1 5.1290 0.4655 -5.4741 12 6 5.5723 2.3039 -6.5067 13 6 6.4870 1.6008 -7.4762 14 1 6.9382 0.6576 -7.2058 15 6 6.7470 2.1613 -8.7088 16 7 7.5449 1.5474 -9.5551 17 14 5.9660 3.7924 -9.1767 18 1 6.8564 4.9052 -8.7597 19 1 5.7671 3.8421 -10.6475 20 1 4.6536 3.9264 -8.4949 21 6 4.4311 2.1255 -4.2903 22 6 1.9991 -0.2245 -1.3630 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 2.4459 1.6802 0.9483 27 1 1.3021 2.1212 -0.3934 28 1 3.9458 0.5068 -0.5953 29 1 3.5526 2.8275 -1.7863 30 1 2.3455 1.9649 -2.7698 31 1 5.9275 2.3331 -2.1108 32 1 5.5022 0.7531 -1.4103 33 1 7.6290 0.6327 -2.6914 34 1 6.3685 -0.3841 -3.4308 35 1 7.5351 0.9169 -5.1722 36 1 7.1576 2.4307 -4.3130 37 1 4.5864 2.4205 -6.9566 38 1 5.9811 3.2858 -6.2681 39 1 7.7281 1.9419 -10.4221 40 1 4.7489 3.1409 -4.0538 41 1 3.4578 2.1545 -4.7803 42 1 1.3009 0.0441 -2.1557 43 1 2.4459 -1.2088 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261004706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:40 Heat of formation + Delta-G solvation = 23.068439 kcal Electronic energy + Delta-G solvation = -19073.700559 eV Core-core repulsion = 16347.086578 eV Total energy + Delta-G solvation = -2726.613981 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24106 -38.51120 -34.49719 -32.59028 -31.23969 -30.73446 -27.56228 -26.53778 -26.25553 -23.78375 -22.74302 -21.92417 -20.40770 -19.47844 -18.93903 -16.73438 -16.27265 -15.61246 -15.52089 -14.88786 -14.57359 -14.22294 -13.90028 -13.52804 -13.30974 -13.20255 -12.88576 -12.74070 -12.45909 -11.91767 -11.79427 -11.65115 -11.54172 -11.21638 -10.86948 -10.78848 -10.70321 -10.47632 -10.41350 -10.08229 -9.76466 -9.58281 -9.30410 -9.05382 -8.96290 -8.50636 -8.05898 -6.01003 -3.97839 3.31599 3.39243 3.42690 3.77196 3.93448 4.43996 4.47549 4.65843 4.88280 5.05562 5.14340 5.24512 5.27466 5.30222 5.33726 5.35610 5.44977 5.49249 5.54781 5.60385 5.69039 5.72816 5.76105 5.85455 6.01661 6.03565 6.09249 6.17249 6.24346 6.30182 6.49193 6.54877 6.82806 6.86617 6.93176 7.07462 7.31605 7.35125 7.37261 7.52597 7.84048 8.58717 9.04950 9.62019 11.12456 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035274 B = 0.004200 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.584138 B = 6664.450089 C = 7018.819871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.490 5.490 3 C 0.003 3.997 4 C -0.108 4.108 5 C 0.063 3.937 6 N -0.535 5.535 7 C 0.057 3.943 8 C -0.118 4.118 9 C -0.107 4.107 10 C -0.067 4.067 11 H 0.071 0.929 12 C -0.009 4.009 13 C -0.512 4.512 14 H 0.074 0.926 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.878 3.122 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.266 1.266 21 C 0.060 3.940 22 C 0.015 3.985 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.015 0.985 38 H 0.009 0.991 39 H 0.262 0.738 40 H 0.026 0.974 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.645 0.373 18.532 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.212 5.212 3 C -0.127 4.127 4 C -0.127 4.127 5 C -0.066 4.066 6 N -0.259 5.259 7 C -0.071 4.071 8 C -0.156 4.156 9 C -0.144 4.144 10 C -0.086 4.086 11 H 0.089 0.911 12 C -0.047 4.047 13 C -0.550 4.550 14 H 0.092 0.908 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.705 3.295 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.191 1.191 21 C -0.067 4.067 22 C -0.113 4.113 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.120 0.880 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.033 0.967 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.552 -0.550 18.763 21.533 hybrid contribution -0.562 2.303 -0.822 2.509 sum -11.114 1.754 17.942 21.178 Atomic orbital electron populations 1.22848 0.89942 1.02326 1.00851 1.68470 1.08862 1.18379 1.25457 1.23993 0.97182 0.91534 0.99973 1.23022 0.98470 0.96128 0.95116 1.22106 0.95597 0.95311 0.93570 1.61922 1.04709 1.53800 1.05459 1.22115 0.89469 0.98747 0.96729 1.21636 0.96873 1.00339 0.96715 1.21547 0.98509 0.99380 0.94971 1.21043 0.92869 1.00278 0.94365 0.91092 1.19605 0.96926 0.95250 0.92884 1.21126 1.27136 1.08039 0.98679 0.90789 1.25027 0.94857 0.97253 0.96437 1.69917 1.37001 1.39273 1.08254 0.86811 0.80498 0.84713 0.77438 1.20452 1.21483 1.19116 1.22282 1.00294 0.94297 0.89857 1.23982 0.96565 1.00690 0.90061 0.94753 0.91232 0.91627 0.89575 0.91360 0.87979 0.94949 0.91029 0.95518 0.91329 0.92368 0.91450 0.90584 0.93310 0.96713 0.97307 0.92845 0.95571 0.91448 0.91136 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.65 60.06 0.58 0.49 16 2 N -0.49 -5.05 6.56 -246.63 -1.62 -6.67 16 3 C 0.00 0.02 7.55 -2.77 -0.02 0.00 16 4 C -0.11 -1.12 3.89 -89.69 -0.35 -1.47 16 5 C 0.06 0.73 4.81 -3.83 -0.02 0.71 16 6 N -0.53 -7.63 4.66 -234.67 -1.09 -8.72 16 7 C 0.06 0.77 5.31 -3.84 -0.02 0.75 16 8 C -0.12 -1.76 6.09 -26.65 -0.16 -1.92 16 9 C -0.11 -1.97 5.06 -26.61 -0.13 -2.10 16 10 C -0.07 -1.32 2.30 -90.54 -0.21 -1.53 16 11 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 12 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 13 C -0.51 -14.40 9.00 -34.44 -0.31 -14.71 16 14 H 0.07 2.23 7.31 -52.49 -0.38 1.85 16 15 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 16 N -0.91 -27.94 13.96 55.43 0.77 -27.17 16 17 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 20 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 21 C 0.06 0.99 4.74 -3.83 -0.02 0.98 16 22 C 0.02 0.16 7.52 -2.77 -0.02 0.14 16 23 H 0.03 0.28 7.62 -51.93 -0.40 -0.12 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.58 7.88 -51.93 -0.41 0.17 16 28 H 0.10 1.11 6.16 -51.93 -0.32 0.79 16 29 H 0.03 0.37 8.12 -51.92 -0.42 -0.05 16 30 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 31 H 0.03 0.37 8.14 -51.92 -0.42 -0.06 16 32 H 0.07 0.82 6.08 -51.93 -0.32 0.50 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.57 7.04 -51.93 -0.37 1.21 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 38 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 1.10 8.02 -51.93 -0.42 0.68 16 42 H 0.07 0.73 7.37 -51.93 -0.38 0.35 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 326.08 15.07 4.91 4.91 Total: -1.00 -29.87 326.08 -10.54 -40.41 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -7.97 Total: -2.73 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -0.88 Total: -17.17 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: -1.94 Total: -42.56 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.87 -10.54 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261004706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.478 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds