Wall clock time and date at job start Mon Mar 30 2020 03:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47954 * 110.99548 * 2 1 4 4 C 1.53936 * 86.17978 * 222.41598 * 3 2 1 5 5 C 1.53003 * 113.73328 * 138.08050 * 4 3 2 6 6 N 1.46895 * 109.47172 * 175.00049 * 5 4 3 7 7 C 1.46842 * 111.00517 * 294.21342 * 6 5 4 8 8 C 1.53031 * 109.52715 * 174.16241 * 7 6 5 9 9 C 1.53121 * 109.31315 * 59.15479 * 8 7 6 10 10 C 1.53114 * 109.15908 * 302.40898 * 9 8 7 11 11 H 1.09000 * 109.50566 * 297.63033 * 10 9 8 12 12 C 1.53006 * 109.50497 * 177.55530 * 10 9 8 13 13 C 1.50699 * 109.47053 * 65.07517 * 12 10 9 14 14 H 1.07995 * 119.99640 * 0.02562 * 13 12 10 15 15 C 1.37872 * 119.99593 * 179.97438 * 13 12 10 16 16 N 1.31519 * 119.99662 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00357 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47022 * 89.99750 * 17 15 13 19 19 H 1.48503 * 109.47348 * 209.99668 * 17 15 13 20 20 H 1.48495 * 109.47001 * 329.99850 * 17 15 13 21 21 C 1.46851 * 110.99941 * 170.00067 * 6 5 4 22 22 C 1.47959 * 110.99613 * 260.64508 * 2 1 3 23 23 H 1.08998 * 109.47693 * 59.99884 * 1 2 3 24 24 H 1.09002 * 109.47219 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47352 * 299.99625 * 1 2 3 26 26 H 1.09007 * 113.75663 * 108.10370 * 3 2 1 27 27 H 1.08994 * 113.86688 * 336.75256 * 3 2 1 28 28 H 1.09002 * 113.73887 * 269.26197 * 4 3 2 29 29 H 1.09008 * 109.46784 * 55.00161 * 5 4 3 30 30 H 1.09000 * 109.47047 * 295.00564 * 5 4 3 31 31 H 1.09010 * 109.45833 * 294.17805 * 7 6 5 32 32 H 1.09000 * 109.46361 * 54.15278 * 7 6 5 33 33 H 1.08993 * 109.50736 * 179.12109 * 8 7 6 34 34 H 1.09006 * 109.50212 * 299.19543 * 8 7 6 35 35 H 1.08998 * 109.55718 * 182.48278 * 9 8 7 36 36 H 1.09001 * 109.49206 * 62.28938 * 9 8 7 37 37 H 1.08997 * 109.47395 * 185.08123 * 12 10 9 38 38 H 1.09004 * 109.46579 * 305.07400 * 12 10 9 39 39 H 0.96999 * 119.99661 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.46176 * 65.82754 * 21 6 5 41 41 H 1.09004 * 109.46385 * 305.85750 * 21 6 5 42 42 H 1.08996 * 113.76721 * 23.25974 * 22 2 1 43 43 H 1.09004 * 113.75689 * 251.89896 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3813 0.0000 4 6 3.0210 0.8793 -1.0360 5 6 3.2610 1.8571 -2.1881 6 7 4.3322 1.3428 -3.0517 7 6 5.6153 1.3138 -2.3381 8 6 6.6731 0.6401 -3.2151 9 6 6.8145 1.4183 -4.5262 10 6 5.4536 1.4759 -5.2255 11 1 5.1290 0.4655 -5.4741 12 6 5.5723 2.3039 -6.5067 13 6 6.4870 1.6008 -7.4762 14 1 6.9382 0.6576 -7.2058 15 6 6.7470 2.1613 -8.7088 16 7 7.5449 1.5474 -9.5551 17 14 5.9660 3.7924 -9.1767 18 1 6.8564 4.9052 -8.7597 19 1 5.7671 3.8421 -10.6475 20 1 4.6536 3.9264 -8.4949 21 6 4.4311 2.1255 -4.2903 22 6 1.9991 -0.2245 -1.3630 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 2.4459 1.6802 0.9483 27 1 1.3021 2.1212 -0.3934 28 1 3.9458 0.5068 -0.5953 29 1 3.5526 2.8275 -1.7863 30 1 2.3455 1.9649 -2.7698 31 1 5.9275 2.3331 -2.1108 32 1 5.5022 0.7531 -1.4103 33 1 7.6290 0.6327 -2.6914 34 1 6.3685 -0.3841 -3.4308 35 1 7.5351 0.9169 -5.1722 36 1 7.1576 2.4307 -4.3130 37 1 4.5864 2.4205 -6.9566 38 1 5.9811 3.2858 -6.2681 39 1 7.7281 1.9419 -10.4221 40 1 4.7489 3.1409 -4.0538 41 1 3.4578 2.1545 -4.7803 42 1 1.3009 0.0441 -2.1557 43 1 2.4459 -1.2088 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261004706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:40 Heat of formation + Delta-G solvation = 2.145430 kcal Electronic energy + Delta-G solvation = -19074.607849 eV Core-core repulsion = 16347.086578 eV Total energy + Delta-G solvation = -2727.521271 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07430 -39.73467 -36.03158 -34.38790 -32.81744 -31.64912 -29.25936 -27.56495 -26.99952 -25.21956 -24.12543 -23.07321 -21.74105 -20.46248 -20.30345 -18.88422 -17.21306 -16.56670 -16.44501 -16.29524 -15.78950 -15.53673 -15.08121 -14.95654 -14.80180 -14.59225 -14.09083 -13.81220 -13.60799 -13.51050 -13.21336 -12.86756 -12.54963 -12.33359 -12.25572 -12.20312 -11.94627 -11.73949 -11.71319 -11.56499 -11.36965 -11.25131 -10.87304 -10.82822 -10.72064 -9.76523 -9.15949 -8.25904 -6.28294 1.35414 1.37384 1.49154 2.37673 2.90212 3.04368 3.09173 3.62785 3.79529 3.99583 4.09347 4.11775 4.21503 4.30663 4.36277 4.45734 4.51554 4.57614 4.60191 4.67691 4.69252 4.71345 4.76858 4.81580 4.88996 4.95056 4.97726 4.99443 5.01269 5.09742 5.22017 5.33714 5.38139 5.39481 5.45264 5.56877 5.70720 5.74619 6.11338 6.18779 6.28009 6.36672 6.79287 7.35207 8.90969 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035274 B = 0.004200 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.584138 B = 6664.450089 C = 7018.819871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.506 5.506 3 C 0.010 3.990 4 C -0.104 4.104 5 C 0.067 3.933 6 N -0.544 5.544 7 C 0.061 3.939 8 C -0.111 4.111 9 C -0.104 4.104 10 C -0.064 4.064 11 H 0.049 0.951 12 C -0.005 4.005 13 C -0.518 4.518 14 H 0.033 0.967 15 C 0.001 3.999 16 N -0.954 5.954 17 Si 0.948 3.052 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.247 1.247 21 C 0.071 3.929 22 C 0.013 3.987 23 H 0.038 0.962 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.017 0.983 38 H 0.015 0.985 39 H 0.264 0.736 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.347 2.123 20.544 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.228 5.228 3 C -0.119 4.119 4 C -0.123 4.123 5 C -0.061 4.061 6 N -0.268 5.268 7 C -0.067 4.067 8 C -0.149 4.149 9 C -0.142 4.142 10 C -0.083 4.083 11 H 0.068 0.932 12 C -0.043 4.043 13 C -0.556 4.556 14 H 0.052 0.948 15 C -0.195 4.195 16 N -0.595 5.595 17 Si 0.772 3.228 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.170 1.170 21 C -0.057 4.057 22 C -0.115 4.115 23 H 0.057 0.943 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.113 0.887 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.267 1.195 20.805 24.182 hybrid contribution 0.010 1.645 -1.430 2.179 sum -12.257 2.840 19.376 23.102 Atomic orbital electron populations 1.22875 0.88968 1.02628 1.01522 1.68456 1.09999 1.19264 1.25103 1.24003 0.96711 0.91219 0.99959 1.22951 0.98545 0.95806 0.94969 1.22133 0.94605 0.95930 0.93447 1.61865 1.05803 1.53761 1.05392 1.22117 0.88494 0.99172 0.96894 1.21573 0.98747 0.99364 0.95186 1.21465 0.96880 0.99609 0.96224 1.20905 0.94789 0.98713 0.93855 0.93216 1.19544 0.95596 0.95482 0.93665 1.21431 1.27386 1.06902 0.99853 0.94843 1.26004 0.95502 1.01600 0.96392 1.70078 1.38989 1.41541 1.08937 0.85686 0.80362 0.79499 0.77268 1.19336 1.21151 1.17015 1.22029 0.99072 0.94204 0.90373 1.23961 0.96808 1.00305 0.90451 0.94347 0.91214 0.90639 0.88718 0.90328 0.88302 0.94030 0.90724 0.94952 0.89065 0.90428 0.92245 0.94208 0.93143 0.96472 0.96704 0.92685 0.95115 0.91017 0.91056 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.16 9.65 127.69 1.23 1.07 16 2 N -0.51 -9.31 6.56 -934.19 -6.12 -15.43 16 3 C 0.01 0.16 7.55 86.41 0.65 0.81 16 4 C -0.10 -1.87 3.89 -10.15 -0.04 -1.91 16 5 C 0.07 1.35 4.81 86.31 0.42 1.77 16 6 N -0.54 -14.28 4.66 -896.35 -4.17 -18.46 16 7 C 0.06 1.48 5.31 86.32 0.46 1.94 16 8 C -0.11 -3.20 6.09 30.64 0.19 -3.01 16 9 C -0.10 -3.88 5.06 30.67 0.16 -3.72 16 10 C -0.06 -2.52 2.30 -10.74 -0.02 -2.54 16 11 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 12 C -0.01 -0.24 3.52 29.85 0.11 -0.13 16 13 C -0.52 -30.08 9.00 25.60 0.23 -29.85 16 14 H 0.03 2.15 7.31 -2.91 -0.02 2.13 16 15 C 0.00 0.06 5.47 84.65 0.46 0.52 16 16 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 17 Si 0.95 44.77 27.47 68.60 1.88 46.66 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 21 C 0.07 2.22 4.74 86.32 0.41 2.63 16 22 C 0.01 0.26 7.52 86.41 0.65 0.91 16 23 H 0.04 0.54 7.62 -2.39 -0.02 0.52 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.08 1.06 7.88 -2.39 -0.02 1.04 16 28 H 0.10 1.87 6.16 -2.39 -0.01 1.85 16 29 H 0.04 0.79 8.12 -2.38 -0.02 0.77 16 30 H 0.07 1.49 7.68 -2.39 -0.02 1.47 16 31 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.09 1.87 6.08 -2.39 -0.01 1.86 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 34 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.04 1.73 7.04 -2.39 -0.02 1.72 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.02 0.79 7.20 -2.39 -0.02 0.78 16 38 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 39 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 40 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 2.17 8.02 -2.39 -0.02 2.16 16 42 H 0.07 1.35 7.37 -2.39 -0.02 1.33 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -65.58 326.08 -2.34 -67.91 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.89 Total: 11.27 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 4.89 Total: -31.51 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -10.00 Total: -94.32 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.66 kcal Total: -65.58 -2.34 -67.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261004706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.057 kcal (2) G-P(sol) polarization free energy of solvation -65.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds