Wall clock time and date at job start Mon Mar 30 2020 04:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46963 * 110.99979 * 2 1 4 4 C 1.53051 * 109.36318 * 183.18928 * 3 2 1 5 5 N 1.46958 * 109.36401 * 301.59750 * 4 3 2 6 6 C 1.46906 * 110.99799 * 183.18782 * 5 4 3 7 7 C 1.54261 * 110.48504 * 61.76519 * 6 5 4 8 8 C 1.53877 * 106.59696 * 217.71272 * 7 6 5 9 9 C 1.54257 * 106.59855 * 359.97438 * 8 7 6 10 10 C 1.54887 * 110.48664 * 306.98783 * 6 5 4 11 11 C 1.46963 * 110.87599 * 59.32628 * 5 4 3 12 12 H 1.08999 * 109.48988 * 60.64554 * 11 5 4 13 13 C 1.53002 * 109.48429 * 180.68711 * 11 5 4 14 14 C 1.50700 * 109.47011 * 182.16687 * 13 11 5 15 15 H 1.08003 * 119.99837 * 5.09479 * 14 13 11 16 16 C 1.37871 * 120.00397 * 185.08726 * 14 13 11 17 17 N 1.31517 * 119.99699 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00314 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46718 * 60.00767 * 18 16 14 20 20 H 1.48501 * 109.47259 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47208 * 300.00618 * 18 16 14 22 22 C 1.46947 * 111.00191 * 123.80217 * 2 1 3 23 23 H 1.09001 * 109.46881 * 296.20176 * 1 2 3 24 24 H 1.09000 * 109.47532 * 56.19614 * 1 2 3 25 25 H 1.08997 * 109.47355 * 176.20069 * 1 2 3 26 26 H 1.08994 * 109.49207 * 303.16072 * 3 2 1 27 27 H 1.09000 * 109.48859 * 63.20301 * 3 2 1 28 28 H 1.08996 * 109.48397 * 181.63331 * 4 3 2 29 29 H 1.08996 * 109.48678 * 61.57035 * 4 3 2 30 30 H 1.08998 * 110.53689 * 184.38134 * 6 5 4 31 31 H 1.09001 * 110.03584 * 98.42481 * 7 6 5 32 32 H 1.09001 * 110.03246 * 336.99199 * 7 6 5 33 33 H 1.09002 * 110.03196 * 119.28783 * 8 7 6 34 34 H 1.09004 * 110.03027 * 240.71456 * 8 7 6 35 35 H 1.09007 * 110.48559 * 142.29163 * 9 8 7 36 36 H 1.09003 * 110.48833 * 264.93188 * 9 8 7 37 37 H 1.09001 * 110.75605 * 38.30745 * 10 6 5 38 38 H 1.08996 * 110.91770 * 275.01260 * 10 6 5 39 39 H 1.08996 * 109.47453 * 302.16669 * 13 11 5 40 40 H 1.08994 * 109.47098 * 62.17138 * 13 11 5 41 41 H 0.96998 * 119.99904 * 179.97438 * 17 16 14 42 42 H 1.08997 * 109.49103 * 56.84134 * 22 2 1 43 43 H 1.09004 * 109.49049 * 296.78029 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.5192 0.5659 1.0597 7 6 6.0590 2.0041 1.1998 8 6 7.3056 2.0950 0.3023 9 6 7.4801 0.7087 -0.3513 10 6 6.0612 0.0884 -0.3104 11 6 3.5234 -0.8061 1.0596 12 1 3.8254 -1.3114 0.1423 13 6 4.0775 -1.5655 2.2668 14 6 3.5797 -2.9877 2.2372 15 1 3.0012 -3.3399 1.3960 16 6 3.8629 -3.8391 3.2840 17 7 4.5670 -3.4101 4.3086 18 14 3.2453 -5.6017 3.2476 19 1 3.8020 -6.2968 2.0592 20 1 3.6805 -6.3043 4.4815 21 1 1.7622 -5.6051 3.1735 22 6 1.9956 -0.7632 1.1400 23 1 -0.3633 0.4538 0.9221 24 1 -0.3634 0.5717 -0.8539 25 1 -0.3634 -1.0254 -0.0681 26 1 1.6013 1.9130 -0.8601 27 1 1.6935 1.8775 0.9172 28 1 3.9177 2.3449 -0.0512 29 1 3.8253 0.8480 -1.0106 30 1 5.9016 -0.0650 1.8620 31 1 6.3303 2.2019 2.2368 32 1 5.3067 2.7194 0.8673 33 1 7.1583 2.8545 -0.4657 34 1 8.1819 2.3368 0.9038 35 1 7.8210 0.8128 -1.3815 36 1 8.1793 0.1013 0.2233 37 1 5.4471 0.4738 -1.1244 38 1 6.1140 -0.9995 -0.3503 39 1 5.1668 -1.5611 2.2303 40 1 3.7427 -1.0825 3.1848 41 1 4.7660 -4.0090 5.0452 42 1 1.6013 -1.7789 1.1109 43 1 1.6938 -0.2821 2.0703 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261004777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:29 Heat of formation + Delta-G solvation = 1.645333 kcal Electronic energy + Delta-G solvation = -20078.491551 eV Core-core repulsion = 17350.948594 eV Total energy + Delta-G solvation = -2727.542957 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.60260 -37.18100 -34.32489 -33.06628 -31.11906 -28.79519 -28.41826 -26.94528 -25.75352 -23.86695 -23.15194 -20.68140 -20.60402 -19.57837 -18.15635 -16.56775 -16.01032 -15.43952 -14.69773 -14.59450 -14.42144 -14.20058 -13.93742 -13.64574 -13.12360 -12.80023 -12.19442 -12.09907 -12.01370 -11.70895 -11.26542 -11.17430 -10.98571 -10.93636 -10.84375 -10.81465 -10.71143 -10.59268 -10.40745 -10.14925 -9.90143 -9.65186 -9.20047 -9.02897 -8.31418 -7.94687 -7.53968 -5.98644 -4.00341 3.34028 3.38665 3.41048 4.36591 4.38123 4.52619 4.91858 4.99597 5.18253 5.35021 5.37275 5.42684 5.56040 5.62322 5.72681 5.77121 5.81728 5.84359 5.89758 5.91722 5.99212 6.08136 6.12637 6.13186 6.21316 6.21737 6.26946 6.35414 6.47207 6.56355 6.62967 6.73767 6.81012 6.98913 7.41273 7.50174 7.60480 7.69534 7.86973 7.89100 8.10357 8.44878 9.05781 9.62936 11.12521 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016206 B = 0.007997 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.341389 B = 3500.257778 C = 4817.952596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.550 5.550 3 C 0.059 3.941 4 C 0.051 3.949 5 N -0.530 5.530 6 C 0.081 3.919 7 C -0.120 4.120 8 C -0.122 4.122 9 C -0.120 4.120 10 C -0.160 4.160 11 C 0.097 3.903 12 H 0.037 0.963 13 C 0.032 3.968 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.074 3.926 23 H 0.021 0.979 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.019 0.981 40 H 0.026 0.974 41 H 0.260 0.740 42 H 0.086 0.914 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.251 10.546 -8.689 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.275 5.275 3 C -0.069 4.069 4 C -0.077 4.077 5 N -0.253 5.253 6 C -0.028 4.028 7 C -0.158 4.158 8 C -0.160 4.160 9 C -0.158 4.158 10 C -0.199 4.199 11 C -0.011 4.011 12 H 0.055 0.945 13 C -0.006 4.006 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.054 4.054 23 H 0.040 0.960 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.037 0.963 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.207 10.493 -8.497 13.504 hybrid contribution -0.351 -1.018 0.067 1.079 sum -0.558 9.475 -8.430 12.694 Atomic orbital electron populations 1.22286 0.88210 1.01899 0.99659 1.62241 1.07040 1.13358 1.44860 1.22108 0.95048 0.89880 0.99898 1.22191 0.93799 0.98384 0.93364 1.62324 1.06478 1.15693 1.40803 1.22657 0.87228 0.96030 0.96891 1.22239 0.96559 0.97297 0.99675 1.22114 0.98083 0.97240 0.98585 1.22262 0.97449 0.96226 0.99911 1.23164 0.96186 1.01059 0.99455 1.21820 0.92798 0.86146 1.00327 0.94497 1.19169 0.95904 0.93666 0.91816 1.21150 1.34004 0.95976 1.04557 0.92665 1.24972 0.95255 0.98424 0.95519 1.69957 1.38972 1.35805 1.08461 0.86702 0.79251 0.85044 0.77269 1.20293 1.21351 1.20275 1.22205 0.95267 0.98102 0.89800 0.96023 0.92210 0.91526 0.91445 0.94610 0.90978 0.94139 0.88051 0.91781 0.91498 0.92458 0.92214 0.92393 0.91658 0.91397 0.91331 0.96312 0.95535 0.92992 0.89537 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.60 60.06 0.58 0.97 16 2 N -0.55 -9.38 4.97 -242.76 -1.21 -10.59 16 3 C 0.06 0.90 5.62 -3.76 -0.02 0.88 16 4 C 0.05 0.80 4.84 -3.77 -0.02 0.78 16 5 N -0.53 -9.74 4.54 -216.59 -0.98 -10.73 16 6 C 0.08 1.38 2.64 -66.05 -0.17 1.21 16 7 C -0.12 -1.70 6.32 -25.61 -0.16 -1.86 16 8 C -0.12 -1.49 6.80 -25.62 -0.17 -1.67 16 9 C -0.12 -1.58 6.83 -25.06 -0.17 -1.75 16 10 C -0.16 -2.50 5.47 -24.73 -0.14 -2.63 16 11 C 0.10 2.05 1.81 -67.65 -0.12 1.93 16 12 H 0.04 0.83 7.56 -51.93 -0.39 0.44 16 13 C 0.03 0.82 4.26 -27.88 -0.12 0.70 16 14 C -0.52 -14.29 8.31 -34.44 -0.29 -14.57 16 15 H 0.06 1.49 7.07 -52.48 -0.37 1.12 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 18 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.07 1.48 4.65 -3.77 -0.02 1.46 16 23 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.00 5.99 -51.93 -0.31 0.69 16 29 H 0.04 0.66 6.06 -51.93 -0.31 0.34 16 30 H 0.10 2.03 5.85 -51.93 -0.30 1.73 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.91 5.82 -51.93 -0.30 0.61 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.04 5.62 -51.93 -0.29 0.74 16 38 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 39 H 0.02 0.50 6.07 -51.93 -0.32 0.19 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.09 1.85 6.93 -51.93 -0.36 1.49 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -28.77 317.29 -10.20 -38.97 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.59 Total: -0.23 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -0.92 Total: -12.97 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -1.45 Total: -47.06 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.77 -10.20 -38.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261004777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.616 kcal (2) G-P(sol) polarization free energy of solvation -28.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds