Wall clock time and date at job start Mon Mar 30 2020 04:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46963 * 110.99979 * 2 1 4 4 C 1.53051 * 109.36318 * 183.18928 * 3 2 1 5 5 N 1.46958 * 109.36401 * 301.59750 * 4 3 2 6 6 C 1.46906 * 110.99799 * 183.18782 * 5 4 3 7 7 C 1.54261 * 110.48504 * 61.76519 * 6 5 4 8 8 C 1.53877 * 106.59696 * 217.71272 * 7 6 5 9 9 C 1.54257 * 106.59855 * 359.97438 * 8 7 6 10 10 C 1.54887 * 110.48664 * 306.98783 * 6 5 4 11 11 C 1.46963 * 110.87599 * 59.32628 * 5 4 3 12 12 H 1.08999 * 109.48988 * 60.64554 * 11 5 4 13 13 C 1.53002 * 109.48429 * 180.68711 * 11 5 4 14 14 C 1.50700 * 109.47011 * 182.16687 * 13 11 5 15 15 H 1.08003 * 119.99837 * 5.09479 * 14 13 11 16 16 C 1.37871 * 120.00397 * 185.08726 * 14 13 11 17 17 N 1.31517 * 119.99699 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00314 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46718 * 60.00767 * 18 16 14 20 20 H 1.48501 * 109.47259 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47208 * 300.00618 * 18 16 14 22 22 C 1.46947 * 111.00191 * 123.80217 * 2 1 3 23 23 H 1.09001 * 109.46881 * 296.20176 * 1 2 3 24 24 H 1.09000 * 109.47532 * 56.19614 * 1 2 3 25 25 H 1.08997 * 109.47355 * 176.20069 * 1 2 3 26 26 H 1.08994 * 109.49207 * 303.16072 * 3 2 1 27 27 H 1.09000 * 109.48859 * 63.20301 * 3 2 1 28 28 H 1.08996 * 109.48397 * 181.63331 * 4 3 2 29 29 H 1.08996 * 109.48678 * 61.57035 * 4 3 2 30 30 H 1.08998 * 110.53689 * 184.38134 * 6 5 4 31 31 H 1.09001 * 110.03584 * 98.42481 * 7 6 5 32 32 H 1.09001 * 110.03246 * 336.99199 * 7 6 5 33 33 H 1.09002 * 110.03196 * 119.28783 * 8 7 6 34 34 H 1.09004 * 110.03027 * 240.71456 * 8 7 6 35 35 H 1.09007 * 110.48559 * 142.29163 * 9 8 7 36 36 H 1.09003 * 110.48833 * 264.93188 * 9 8 7 37 37 H 1.09001 * 110.75605 * 38.30745 * 10 6 5 38 38 H 1.08996 * 110.91770 * 275.01260 * 10 6 5 39 39 H 1.08996 * 109.47453 * 302.16669 * 13 11 5 40 40 H 1.08994 * 109.47098 * 62.17138 * 13 11 5 41 41 H 0.96998 * 119.99904 * 179.97438 * 17 16 14 42 42 H 1.08997 * 109.49103 * 56.84134 * 22 2 1 43 43 H 1.09004 * 109.49049 * 296.78029 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.5192 0.5659 1.0597 7 6 6.0590 2.0041 1.1998 8 6 7.3056 2.0950 0.3023 9 6 7.4801 0.7087 -0.3513 10 6 6.0612 0.0884 -0.3104 11 6 3.5234 -0.8061 1.0596 12 1 3.8254 -1.3114 0.1423 13 6 4.0775 -1.5655 2.2668 14 6 3.5797 -2.9877 2.2372 15 1 3.0012 -3.3399 1.3960 16 6 3.8629 -3.8391 3.2840 17 7 4.5670 -3.4101 4.3086 18 14 3.2453 -5.6017 3.2476 19 1 3.8020 -6.2968 2.0592 20 1 3.6805 -6.3043 4.4815 21 1 1.7622 -5.6051 3.1735 22 6 1.9956 -0.7632 1.1400 23 1 -0.3633 0.4538 0.9221 24 1 -0.3634 0.5717 -0.8539 25 1 -0.3634 -1.0254 -0.0681 26 1 1.6013 1.9130 -0.8601 27 1 1.6935 1.8775 0.9172 28 1 3.9177 2.3449 -0.0512 29 1 3.8253 0.8480 -1.0106 30 1 5.9016 -0.0650 1.8620 31 1 6.3303 2.2019 2.2368 32 1 5.3067 2.7194 0.8673 33 1 7.1583 2.8545 -0.4657 34 1 8.1819 2.3368 0.9038 35 1 7.8210 0.8128 -1.3815 36 1 8.1793 0.1013 0.2233 37 1 5.4471 0.4738 -1.1244 38 1 6.1140 -0.9995 -0.3503 39 1 5.1668 -1.5611 2.2303 40 1 3.7427 -1.0825 3.1848 41 1 4.7660 -4.0090 5.0452 42 1 1.6013 -1.7789 1.1109 43 1 1.6938 -0.2821 2.0703 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261004777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:28 Heat of formation + Delta-G solvation = -17.346170 kcal Electronic energy + Delta-G solvation = -20079.315085 eV Core-core repulsion = 17350.948594 eV Total energy + Delta-G solvation = -2728.366490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02105 -38.46023 -35.95051 -34.84036 -32.90516 -30.07758 -29.59778 -28.79758 -27.00475 -25.69472 -24.59414 -22.33715 -21.87306 -20.80367 -19.65350 -18.62570 -17.43376 -16.80214 -16.49029 -16.05799 -15.80466 -15.58298 -15.40156 -14.97969 -14.33198 -14.23099 -14.09692 -13.69003 -13.42273 -13.24851 -12.84114 -12.69151 -12.56493 -12.41657 -12.24705 -12.16411 -12.13813 -12.02232 -11.83761 -11.55962 -11.35029 -11.21111 -11.08121 -10.91326 -10.49615 -9.31804 -9.01969 -8.18697 -6.28497 1.38948 1.41560 1.49344 2.40010 3.02046 3.04319 3.16073 3.73360 3.83013 3.97001 4.10981 4.15209 4.24722 4.36696 4.42856 4.53719 4.58715 4.64001 4.67004 4.69316 4.72218 4.79319 4.82386 4.91517 4.95716 4.99639 5.02604 5.09848 5.12544 5.17764 5.24278 5.33372 5.40737 5.45741 5.53517 5.69445 5.78399 6.05215 6.10783 6.21485 6.40520 6.43264 6.86342 7.39495 8.93050 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016206 B = 0.007997 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.341389 B = 3500.257778 C = 4817.952596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.557 5.557 3 C 0.058 3.942 4 C 0.052 3.948 5 N -0.540 5.540 6 C 0.074 3.926 7 C -0.113 4.113 8 C -0.114 4.114 9 C -0.116 4.116 10 C -0.154 4.154 11 C 0.112 3.888 12 H 0.021 0.979 13 C 0.046 3.954 14 C -0.533 4.533 15 H 0.058 0.942 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.959 3.041 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.267 1.267 22 C 0.086 3.914 23 H 0.022 0.978 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.031 0.969 28 H 0.099 0.901 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.038 0.962 39 H -0.005 1.005 40 H -0.010 1.010 41 H 0.262 0.738 42 H 0.067 0.933 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.848 11.825 -10.721 15.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.281 5.281 3 C -0.070 4.070 4 C -0.076 4.076 5 N -0.263 5.263 6 C -0.035 4.035 7 C -0.151 4.151 8 C -0.152 4.152 9 C -0.154 4.154 10 C -0.194 4.194 11 C 0.004 3.996 12 H 0.039 0.961 13 C 0.008 3.992 14 C -0.572 4.572 15 H 0.076 0.924 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.784 3.216 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.043 4.043 23 H 0.041 0.959 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.121 0.879 27 H 0.049 0.951 28 H 0.117 0.883 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.013 0.987 40 H 0.008 0.992 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -0.811 11.790 -10.549 15.841 hybrid contribution -0.162 -1.380 0.708 1.560 sum -0.973 10.410 -9.840 14.358 Atomic orbital electron populations 1.22377 0.86170 1.02505 1.01002 1.62227 1.08949 1.14363 1.42604 1.22242 0.94627 0.88888 1.01208 1.22320 0.94329 0.99038 0.91887 1.62286 1.07365 1.13858 1.42810 1.22624 0.86675 0.97733 0.96449 1.22198 0.97831 0.94903 1.00136 1.22091 0.97295 0.97007 0.98783 1.22258 0.95322 0.96525 1.01343 1.23079 0.98278 0.99369 0.98629 1.21401 0.93649 0.87489 0.97092 0.96065 1.18925 0.94400 0.93570 0.92267 1.21501 1.33888 0.97052 1.04722 0.92395 1.25883 0.95323 1.03100 0.95038 1.70101 1.40224 1.37497 1.09216 0.85587 0.79091 0.79359 0.77555 1.19367 1.20852 1.19149 1.21889 0.94314 0.97605 0.90466 0.95945 0.89194 0.91682 0.87903 0.95099 0.88302 0.94182 0.92380 0.92392 0.90208 0.90009 0.91029 0.90127 0.92527 0.90326 0.94313 0.98710 0.99185 0.92875 0.91448 0.96550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.60 127.69 1.23 1.94 16 2 N -0.56 -18.26 4.97 -921.96 -4.58 -22.84 16 3 C 0.06 1.63 5.62 86.31 0.49 2.11 16 4 C 0.05 1.51 4.84 86.31 0.42 1.93 16 5 N -0.54 -20.17 4.54 -839.16 -3.81 -23.98 16 6 C 0.07 2.60 2.64 45.99 0.12 2.73 16 7 C -0.11 -3.06 6.32 31.32 0.20 -2.86 16 8 C -0.11 -2.47 6.80 31.32 0.21 -2.26 16 9 C -0.12 -2.88 6.83 31.67 0.22 -2.67 16 10 C -0.15 -4.85 5.47 31.89 0.17 -4.67 16 11 C 0.11 4.97 1.81 44.92 0.08 5.05 16 12 H 0.02 1.00 7.56 -2.39 -0.02 0.99 16 13 C 0.05 2.52 4.26 29.85 0.13 2.64 16 14 C -0.53 -30.69 8.31 25.60 0.21 -30.48 16 15 H 0.06 3.23 7.07 -2.91 -0.02 3.21 16 16 C 0.00 0.27 5.46 84.65 0.46 0.73 16 17 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 18 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 C 0.09 3.54 4.65 86.31 0.40 3.94 16 23 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.09 1.84 8.13 -2.39 -0.02 1.82 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.10 2.21 8.13 -2.39 -0.02 2.19 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 2.39 5.99 -2.39 -0.01 2.38 16 29 H 0.04 1.20 6.06 -2.39 -0.01 1.19 16 30 H 0.06 2.54 5.85 -2.39 -0.01 2.52 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.95 5.82 -2.39 -0.01 1.94 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 2.29 5.62 -2.39 -0.01 2.28 16 38 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16 39 H -0.01 -0.31 6.07 -2.39 -0.01 -0.32 16 40 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 41 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 42 H 0.07 2.99 6.93 -2.39 -0.02 2.97 16 43 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -65.21 317.29 -0.78 -66.00 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.96 Total: 12.82 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 4.34 Total: -21.86 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -8.10 Total: -103.88 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -65.21 -0.78 -66.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261004777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.649 kcal (2) G-P(sol) polarization free energy of solvation -65.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds