Wall clock time and date at job start Mon Mar 30 2020 03:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47953 * 111.00068 * 2 1 4 4 C 1.53935 * 86.18140 * 222.41543 * 3 2 1 5 5 C 1.52996 * 113.73519 * 138.07626 * 4 3 2 6 6 N 1.46901 * 109.46936 * 176.90076 * 5 4 3 7 7 C 1.47800 * 110.99939 * 66.04971 * 6 5 4 8 8 C 1.45869 * 112.91918 * 153.86596 * 7 6 5 9 9 C 1.54499 * 111.59108 * 61.32400 * 8 7 6 10 10 C 1.50467 * 108.85615 * 282.81005 * 9 8 7 11 11 H 1.09000 * 108.76732 * 331.35211 * 10 9 8 12 12 C 1.50699 * 108.76714 * 213.07133 * 10 9 8 13 13 H 1.07997 * 120.00652 * 334.88659 * 12 10 9 14 14 C 1.37877 * 119.99577 * 154.89368 * 12 10 9 15 15 N 1.31512 * 119.99897 * 185.27634 * 14 12 10 16 16 Si 1.86800 * 120.00110 * 5.27029 * 14 12 10 17 17 H 1.48501 * 109.46792 * 84.82404 * 16 14 12 18 18 H 1.48499 * 109.47131 * 204.82015 * 16 14 12 19 19 H 1.48500 * 109.47288 * 324.82462 * 16 14 12 20 20 C 1.54289 * 113.03092 * 92.15308 * 10 9 8 21 21 C 1.44264 * 111.00258 * 304.06300 * 6 5 4 22 22 C 1.48182 * 111.07206 * 260.56436 * 2 1 3 23 23 H 1.09002 * 109.46784 * 60.00041 * 1 2 3 24 24 H 1.08991 * 109.47536 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46682 * 300.00712 * 1 2 3 26 26 H 1.09003 * 113.76505 * 108.10019 * 3 2 1 27 27 H 1.09004 * 113.86430 * 336.74242 * 3 2 1 28 28 H 1.08996 * 113.73379 * 269.25978 * 4 3 2 29 29 H 1.08997 * 109.47675 * 296.90333 * 5 4 3 30 30 H 1.08998 * 109.47005 * 56.90719 * 5 4 3 31 31 H 1.08996 * 108.79369 * 274.75040 * 7 6 5 32 32 H 1.08998 * 108.79382 * 33.09412 * 7 6 5 33 33 H 1.09002 * 109.05480 * 181.86966 * 8 7 6 34 34 H 1.08999 * 109.05332 * 300.77976 * 8 7 6 35 35 H 1.09004 * 109.57322 * 42.62186 * 9 8 7 36 36 H 1.09001 * 109.57392 * 162.87064 * 9 8 7 37 37 H 0.97000 * 120.00536 * 179.97438 * 15 14 12 38 38 H 1.08999 * 108.91944 * 79.02881 * 20 10 9 39 39 H 1.09002 * 108.91518 * 197.66971 * 20 10 9 40 40 H 1.09003 * 108.98213 * 339.95600 * 21 6 5 41 41 H 1.09003 * 108.97619 * 98.66458 * 21 6 5 42 42 H 1.09001 * 113.76116 * 23.23940 * 22 2 1 43 43 H 1.09006 * 113.82402 * 251.81886 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0212 0.8792 -1.0360 5 6 3.2612 1.8568 -2.1881 6 7 4.3008 1.3206 -3.0768 7 6 3.8379 0.0895 -3.7510 8 6 4.5054 -0.1449 -5.0266 9 6 6.0299 -0.3201 -4.8468 10 6 6.6537 1.0331 -4.6379 11 1 6.0459 1.7817 -5.1463 12 6 8.0312 1.0316 -5.2490 13 1 8.5699 0.1027 -5.3641 14 6 8.6038 2.2162 -5.6612 15 7 9.7598 2.2046 -6.2881 16 14 7.7375 3.8375 -5.3293 17 1 8.0771 4.3095 -3.9628 18 1 8.1778 4.8470 -6.3253 19 1 6.2688 3.6449 -5.4357 20 6 6.7714 1.4202 -3.1490 21 6 5.5126 1.0416 -2.3455 22 6 2.0019 -0.2267 -1.3640 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 2.4461 1.6803 0.9482 27 1 1.3023 2.1212 -0.3936 28 1 3.9459 0.5067 -0.5952 29 1 2.3367 1.9906 -2.7498 30 1 3.5855 2.8174 -1.7879 31 1 4.0244 -0.7612 -3.0956 32 1 2.7651 0.1678 -3.9271 33 1 4.0950 -1.0457 -5.4828 34 1 4.3200 0.7028 -5.6863 35 1 6.2252 -0.9501 -3.9789 36 1 6.4517 -0.7851 -5.7378 37 1 10.1625 3.0379 -6.5785 38 1 7.6326 0.9097 -2.7181 39 1 6.9257 2.4967 -3.0749 40 1 5.5030 1.6078 -1.4141 41 1 5.5483 -0.0224 -2.1113 42 1 1.3044 0.0404 -2.1580 43 1 2.4505 -1.2103 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261005847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:43 Heat of formation + Delta-G solvation = 37.131878 kcal Electronic energy + Delta-G solvation = -19825.318295 eV Core-core repulsion = 17099.314150 eV Total energy + Delta-G solvation = -2726.004145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49475 -38.40224 -34.64689 -32.54378 -31.38765 -30.68395 -27.68150 -26.45229 -25.50558 -24.59770 -22.79253 -22.16164 -20.04817 -19.57486 -18.31123 -16.81002 -16.32390 -15.54609 -15.46128 -15.14973 -14.75527 -14.17311 -13.93439 -13.52545 -13.28632 -12.95990 -12.66086 -12.47595 -12.42610 -11.91923 -11.71978 -11.53270 -11.49758 -11.11673 -10.93276 -10.81218 -10.58157 -10.41672 -10.20825 -10.02459 -9.63372 -9.47491 -9.15923 -9.00763 -8.69309 -8.38502 -7.83521 -5.95277 -3.92463 3.40334 3.47683 3.55637 3.71449 4.13152 4.40521 4.53325 4.55742 4.83181 5.05335 5.14388 5.21105 5.25158 5.31847 5.34674 5.41447 5.46391 5.54450 5.57188 5.58735 5.76594 5.83550 5.93863 5.98722 6.05251 6.13273 6.16836 6.28313 6.32250 6.49664 6.59586 6.72473 6.79050 7.00202 7.02433 7.22089 7.43185 7.55221 7.67975 7.79275 7.97163 8.67904 9.10760 9.69693 11.18294 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.038804 B = 0.005380 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.403410 B = 5202.788292 C = 5534.992793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.488 5.488 3 C 0.007 3.993 4 C -0.152 4.152 5 C 0.064 3.936 6 N -0.520 5.520 7 C 0.067 3.933 8 C -0.123 4.123 9 C -0.092 4.092 10 C 0.015 3.985 11 H 0.041 0.959 12 C -0.510 4.510 13 H 0.068 0.932 14 C 0.068 3.932 15 N -0.908 5.908 16 Si 0.876 3.124 17 H -0.279 1.279 18 H -0.297 1.297 19 H -0.256 1.256 20 C -0.106 4.106 21 C 0.055 3.945 22 C 0.008 3.992 23 H 0.033 0.967 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.032 0.968 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.059 0.941 37 H 0.261 0.739 38 H 0.057 0.943 39 H 0.041 0.959 40 H 0.050 0.950 41 H 0.035 0.965 42 H 0.070 0.930 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.864 -2.472 10.608 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.210 5.210 3 C -0.123 4.123 4 C -0.173 4.173 5 C -0.065 4.065 6 N -0.243 5.243 7 C -0.060 4.060 8 C -0.161 4.161 9 C -0.129 4.129 10 C -0.004 4.004 11 H 0.059 0.941 12 C -0.548 4.548 13 H 0.087 0.913 14 C -0.132 4.132 15 N -0.547 5.547 16 Si 0.704 3.296 17 H -0.205 1.205 18 H -0.224 1.224 19 H -0.181 1.181 20 C -0.144 4.144 21 C -0.074 4.074 22 C -0.120 4.120 23 H 0.052 0.948 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.088 0.912 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.475 -2.449 10.680 20.627 hybrid contribution -0.852 0.901 0.246 1.264 sum -18.327 -1.548 10.927 21.394 Atomic orbital electron populations 1.22850 0.89969 1.02259 1.00890 1.68509 1.08806 1.18740 1.24933 1.23923 0.97021 0.91257 1.00059 1.23813 0.98727 0.97307 0.97441 1.22389 0.95578 0.97181 0.91368 1.61784 1.03489 1.29791 1.29197 1.21003 0.98096 0.90324 0.96613 1.20698 0.97866 1.00725 0.96788 1.21314 0.92184 0.99101 1.00324 1.18918 0.96383 0.93762 0.91380 0.94116 1.21278 0.99964 0.94885 1.38678 0.91339 1.25053 0.94750 0.99008 0.94431 1.69930 1.18047 1.27104 1.39654 0.86916 0.81348 0.83664 0.77655 1.20522 1.22366 1.18058 1.22341 0.93750 0.99789 0.98545 1.22092 0.91125 0.98575 0.95569 1.24145 0.96884 1.00379 0.90614 0.94804 0.91302 0.91521 0.89528 0.91227 0.87960 0.91133 0.90498 0.94977 0.92836 0.92934 0.91643 0.94092 0.92197 0.92956 0.92480 0.93993 0.93186 0.94667 0.91185 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.65 60.07 0.58 0.49 16 2 N -0.49 -5.20 6.55 -246.40 -1.61 -6.82 16 3 C 0.01 0.07 7.55 -2.76 -0.02 0.05 16 4 C -0.15 -1.68 3.28 -89.69 -0.29 -1.97 16 5 C 0.06 0.79 4.99 -3.83 -0.02 0.77 16 6 N -0.52 -8.18 4.45 -239.57 -1.07 -9.25 16 7 C 0.07 0.97 3.58 -6.70 -0.02 0.95 16 8 C -0.12 -2.04 5.53 -29.32 -0.16 -2.20 16 9 C -0.09 -1.84 5.08 -27.21 -0.14 -1.98 16 10 C 0.01 0.34 1.37 -92.36 -0.13 0.21 16 11 H 0.04 1.02 5.03 -51.93 -0.26 0.75 16 12 C -0.51 -14.43 8.47 -34.44 -0.29 -14.72 16 13 H 0.07 2.10 8.03 -52.49 -0.42 1.68 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 15 N -0.91 -28.37 13.96 55.43 0.77 -27.60 16 16 Si 0.88 22.31 25.52 -169.99 -4.34 17.97 16 17 H -0.28 -6.98 7.10 56.52 0.40 -6.57 16 18 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 19 H -0.26 -6.34 6.16 56.52 0.35 -5.99 16 20 C -0.11 -2.24 5.19 -25.50 -0.13 -2.37 16 21 C 0.05 0.92 3.84 -4.68 -0.02 0.90 16 22 C 0.01 0.09 5.80 -2.64 -0.02 0.07 16 23 H 0.03 0.27 7.63 -51.93 -0.40 -0.12 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.61 7.88 -51.93 -0.41 0.20 16 28 H 0.10 1.26 6.58 -51.93 -0.34 0.92 16 29 H 0.07 0.81 7.63 -51.93 -0.40 0.41 16 30 H 0.08 0.95 8.13 -51.93 -0.42 0.53 16 31 H 0.03 0.45 6.56 -51.93 -0.34 0.11 16 32 H 0.05 0.68 7.00 -51.93 -0.36 0.31 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.18 7.59 -51.93 -0.39 0.78 16 35 H 0.04 0.78 7.15 -51.93 -0.37 0.41 16 36 H 0.06 1.27 7.72 -51.93 -0.40 0.87 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.06 1.24 7.98 -51.93 -0.41 0.82 16 39 H 0.04 0.93 5.99 -51.93 -0.31 0.62 16 40 H 0.05 0.76 7.01 -51.93 -0.36 0.40 16 41 H 0.04 0.57 6.45 -51.93 -0.33 0.24 16 42 H 0.07 0.69 7.16 -51.93 -0.37 0.32 16 43 H 0.09 0.95 7.84 -51.93 -0.41 0.54 16 LS Contribution 310.88 15.07 4.68 4.68 Total: -1.00 -30.63 310.88 -9.92 -40.55 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.60 Total: -1.64 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -0.76 Total: -17.91 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -1.91 Total: -43.66 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.34 Total: 17.97 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.63 -9.92 -40.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.684 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds