Wall clock time and date at job start Mon Mar 30 2020 03:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47953 * 111.00068 * 2 1 4 4 C 1.53935 * 86.18140 * 222.41543 * 3 2 1 5 5 C 1.52996 * 113.73519 * 138.07626 * 4 3 2 6 6 N 1.46901 * 109.46936 * 176.90076 * 5 4 3 7 7 C 1.47800 * 110.99939 * 66.04971 * 6 5 4 8 8 C 1.45869 * 112.91918 * 153.86596 * 7 6 5 9 9 C 1.54499 * 111.59108 * 61.32400 * 8 7 6 10 10 C 1.50467 * 108.85615 * 282.81005 * 9 8 7 11 11 H 1.09000 * 108.76732 * 331.35211 * 10 9 8 12 12 C 1.50699 * 108.76714 * 213.07133 * 10 9 8 13 13 H 1.07997 * 120.00652 * 334.88659 * 12 10 9 14 14 C 1.37877 * 119.99577 * 154.89368 * 12 10 9 15 15 N 1.31512 * 119.99897 * 185.27634 * 14 12 10 16 16 Si 1.86800 * 120.00110 * 5.27029 * 14 12 10 17 17 H 1.48501 * 109.46792 * 84.82404 * 16 14 12 18 18 H 1.48499 * 109.47131 * 204.82015 * 16 14 12 19 19 H 1.48500 * 109.47288 * 324.82462 * 16 14 12 20 20 C 1.54289 * 113.03092 * 92.15308 * 10 9 8 21 21 C 1.44264 * 111.00258 * 304.06300 * 6 5 4 22 22 C 1.48182 * 111.07206 * 260.56436 * 2 1 3 23 23 H 1.09002 * 109.46784 * 60.00041 * 1 2 3 24 24 H 1.08991 * 109.47536 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46682 * 300.00712 * 1 2 3 26 26 H 1.09003 * 113.76505 * 108.10019 * 3 2 1 27 27 H 1.09004 * 113.86430 * 336.74242 * 3 2 1 28 28 H 1.08996 * 113.73379 * 269.25978 * 4 3 2 29 29 H 1.08997 * 109.47675 * 296.90333 * 5 4 3 30 30 H 1.08998 * 109.47005 * 56.90719 * 5 4 3 31 31 H 1.08996 * 108.79369 * 274.75040 * 7 6 5 32 32 H 1.08998 * 108.79382 * 33.09412 * 7 6 5 33 33 H 1.09002 * 109.05480 * 181.86966 * 8 7 6 34 34 H 1.08999 * 109.05332 * 300.77976 * 8 7 6 35 35 H 1.09004 * 109.57322 * 42.62186 * 9 8 7 36 36 H 1.09001 * 109.57392 * 162.87064 * 9 8 7 37 37 H 0.97000 * 120.00536 * 179.97438 * 15 14 12 38 38 H 1.08999 * 108.91944 * 79.02881 * 20 10 9 39 39 H 1.09002 * 108.91518 * 197.66971 * 20 10 9 40 40 H 1.09003 * 108.98213 * 339.95600 * 21 6 5 41 41 H 1.09003 * 108.97619 * 98.66458 * 21 6 5 42 42 H 1.09001 * 113.76116 * 23.23940 * 22 2 1 43 43 H 1.09006 * 113.82402 * 251.81886 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0212 0.8792 -1.0360 5 6 3.2612 1.8568 -2.1881 6 7 4.3008 1.3206 -3.0768 7 6 3.8379 0.0895 -3.7510 8 6 4.5054 -0.1449 -5.0266 9 6 6.0299 -0.3201 -4.8468 10 6 6.6537 1.0331 -4.6379 11 1 6.0459 1.7817 -5.1463 12 6 8.0312 1.0316 -5.2490 13 1 8.5699 0.1027 -5.3641 14 6 8.6038 2.2162 -5.6612 15 7 9.7598 2.2046 -6.2881 16 14 7.7375 3.8375 -5.3293 17 1 8.0771 4.3095 -3.9628 18 1 8.1778 4.8470 -6.3253 19 1 6.2688 3.6449 -5.4357 20 6 6.7714 1.4202 -3.1490 21 6 5.5126 1.0416 -2.3455 22 6 2.0019 -0.2267 -1.3640 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 2.4461 1.6803 0.9482 27 1 1.3023 2.1212 -0.3936 28 1 3.9459 0.5067 -0.5952 29 1 2.3367 1.9906 -2.7498 30 1 3.5855 2.8174 -1.7879 31 1 4.0244 -0.7612 -3.0956 32 1 2.7651 0.1678 -3.9271 33 1 4.0950 -1.0457 -5.4828 34 1 4.3200 0.7028 -5.6863 35 1 6.2252 -0.9501 -3.9789 36 1 6.4517 -0.7851 -5.7378 37 1 10.1625 3.0379 -6.5785 38 1 7.6326 0.9097 -2.7181 39 1 6.9257 2.4967 -3.0749 40 1 5.5030 1.6078 -1.4141 41 1 5.5483 -0.0224 -2.1113 42 1 1.3044 0.0404 -2.1580 43 1 2.4505 -1.2103 -1.5037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261005847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:43 Heat of formation + Delta-G solvation = 14.277244 kcal Electronic energy + Delta-G solvation = -19826.309346 eV Core-core repulsion = 17099.314150 eV Total energy + Delta-G solvation = -2726.995196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.38423 -39.62083 -36.21937 -34.28511 -33.10772 -31.67243 -28.98529 -27.46803 -26.81053 -25.83406 -24.33155 -23.31492 -21.15291 -20.73643 -19.84969 -18.85372 -17.36079 -16.64639 -16.50123 -16.28214 -15.94339 -15.65933 -15.30041 -14.98587 -14.50595 -14.41124 -13.92629 -13.71115 -13.53343 -13.26825 -13.07926 -12.95585 -12.71379 -12.40706 -12.21484 -12.03606 -11.93166 -11.75606 -11.53316 -11.40622 -11.38428 -11.17153 -10.83998 -10.71152 -10.52497 -9.84873 -8.99211 -8.24342 -6.25009 1.36258 1.38578 1.52096 2.39847 2.96771 3.10606 3.12228 3.55211 3.73117 4.02847 4.15208 4.20426 4.33223 4.35280 4.39315 4.49237 4.51951 4.56139 4.59051 4.62921 4.72724 4.75667 4.78653 4.87279 4.88546 4.95826 5.00549 5.07768 5.08934 5.19320 5.30878 5.34457 5.38059 5.50255 5.52592 5.74794 5.83835 5.96429 6.09238 6.32619 6.39950 6.45663 6.84217 7.40214 8.93049 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.038804 B = 0.005380 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.403410 B = 5202.788292 C = 5534.992793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.508 5.508 3 C 0.013 3.987 4 C -0.148 4.148 5 C 0.069 3.931 6 N -0.543 5.543 7 C 0.068 3.932 8 C -0.114 4.114 9 C -0.092 4.092 10 C 0.021 3.979 11 H 0.030 0.970 12 C -0.514 4.514 13 H 0.026 0.974 14 C 0.009 3.991 15 N -0.958 5.958 16 Si 0.941 3.059 17 H -0.269 1.269 18 H -0.296 1.296 19 H -0.241 1.241 20 C -0.105 4.105 21 C 0.069 3.931 22 C 0.011 3.989 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.036 0.964 37 H 0.262 0.738 38 H 0.041 0.959 39 H 0.029 0.971 40 H 0.067 0.933 41 H 0.041 0.959 42 H 0.081 0.919 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.121 -1.871 12.020 24.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.231 5.231 3 C -0.116 4.116 4 C -0.169 4.169 5 C -0.059 4.059 6 N -0.266 5.266 7 C -0.059 4.059 8 C -0.152 4.152 9 C -0.129 4.129 10 C 0.002 3.998 11 H 0.048 0.952 12 C -0.552 4.552 13 H 0.044 0.956 14 C -0.187 4.187 15 N -0.599 5.599 16 Si 0.767 3.233 17 H -0.194 1.194 18 H -0.223 1.223 19 H -0.165 1.165 20 C -0.143 4.143 21 C -0.060 4.060 22 C -0.117 4.117 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.759 -1.861 12.110 24.105 hybrid contribution 0.208 0.617 -0.218 0.687 sum -20.551 -1.244 11.891 23.776 Atomic orbital electron populations 1.22875 0.88829 1.02631 1.01607 1.68493 1.10114 1.19347 1.25107 1.23926 0.96679 0.91245 0.99764 1.23671 0.98560 0.97344 0.97314 1.22397 0.94990 0.97174 0.91374 1.61649 1.04070 1.30523 1.30312 1.20977 0.99264 0.90283 0.95362 1.20633 0.94863 1.01458 0.98198 1.21223 0.95064 0.97091 0.99559 1.18866 0.93068 0.95377 0.92509 0.95197 1.21676 1.02023 0.93185 1.38319 0.95572 1.25906 0.95466 1.02928 0.94408 1.70083 1.20089 1.28123 1.41635 0.85862 0.80830 0.78867 0.77773 1.19427 1.22326 1.16493 1.22196 0.96113 0.98721 0.97313 1.21826 0.89763 0.99163 0.95209 1.24135 0.96797 0.99792 0.90979 0.93987 0.91171 0.90885 0.89438 0.89860 0.89328 0.89652 0.90443 0.94083 0.90071 0.90360 0.93039 0.93308 0.94537 0.92900 0.93992 0.95222 0.91420 0.94031 0.90094 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.15 9.65 127.69 1.23 1.08 16 2 N -0.51 -9.26 6.55 -933.47 -6.12 -15.38 16 3 C 0.01 0.21 7.55 86.41 0.65 0.86 16 4 C -0.15 -2.76 3.28 -10.15 -0.03 -2.79 16 5 C 0.07 1.43 4.99 86.30 0.43 1.86 16 6 N -0.54 -15.32 4.45 -911.85 -4.06 -19.38 16 7 C 0.07 1.73 3.58 83.94 0.30 2.03 16 8 C -0.11 -3.50 5.53 28.92 0.16 -3.34 16 9 C -0.09 -3.65 5.08 30.28 0.15 -3.50 16 10 C 0.02 0.97 1.37 -11.92 -0.02 0.96 16 11 H 0.03 1.47 5.03 -2.39 -0.01 1.45 16 12 C -0.51 -30.16 8.47 25.60 0.22 -29.94 16 13 H 0.03 1.70 8.03 -2.91 -0.02 1.68 16 14 C 0.01 0.53 5.47 84.65 0.46 0.99 16 15 N -0.96 -61.99 13.96 21.45 0.30 -61.70 16 16 Si 0.94 46.57 25.52 68.60 1.75 48.32 16 17 H -0.27 -12.77 7.10 99.48 0.71 -12.07 16 18 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 19 H -0.24 -11.27 6.16 99.48 0.61 -10.65 16 20 C -0.10 -4.36 5.19 31.39 0.16 -4.20 16 21 C 0.07 2.15 3.84 87.15 0.33 2.49 16 22 C 0.01 0.20 5.80 86.37 0.50 0.70 16 23 H 0.04 0.52 7.63 -2.39 -0.02 0.50 16 24 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.08 1.12 7.88 -2.38 -0.02 1.10 16 28 H 0.09 1.92 6.58 -2.39 -0.02 1.91 16 29 H 0.09 1.55 7.63 -2.39 -0.02 1.53 16 30 H 0.08 1.62 8.13 -2.39 -0.02 1.60 16 31 H 0.04 1.00 6.56 -2.39 -0.02 0.99 16 32 H 0.08 1.67 7.00 -2.39 -0.02 1.65 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.74 7.59 -2.39 -0.02 1.72 16 35 H 0.05 1.84 7.15 -2.38 -0.02 1.82 16 36 H 0.04 1.58 7.72 -2.39 -0.02 1.56 16 37 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 38 H 0.04 1.83 7.98 -2.39 -0.02 1.81 16 39 H 0.03 1.28 5.99 -2.39 -0.01 1.26 16 40 H 0.07 1.88 7.01 -2.39 -0.02 1.86 16 41 H 0.04 1.25 6.45 -2.39 -0.02 1.23 16 42 H 0.08 1.23 7.16 -2.39 -0.02 1.22 16 43 H 0.08 1.50 7.84 -2.38 -0.02 1.48 16 Total: -1.00 -68.04 310.88 -2.70 -70.74 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.86 Total: 10.20 kcal Atomic # 6 Polarization: -37.36 SS G_CDS: 4.56 Total: -32.80 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -9.88 Total: -96.46 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.75 Total: 48.32 kcal Total: -68.04 -2.70 -70.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.017 kcal (2) G-P(sol) polarization free energy of solvation -68.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds