Wall clock time and date at job start Mon Mar 30 2020 03:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47961 * 110.99868 * 2 1 4 4 C 1.53941 * 86.18257 * 222.41971 * 3 2 1 5 5 C 1.52996 * 113.73317 * 138.07815 * 4 3 2 6 6 N 1.46906 * 109.46679 * 176.89658 * 5 4 3 7 7 C 1.44307 * 110.99707 * 66.05062 * 6 5 4 8 8 C 1.53982 * 108.35078 * 221.36788 * 7 6 5 9 9 C 1.45884 * 112.65797 * 278.58524 * 8 7 6 10 10 C 1.54520 * 111.67234 * 61.50068 * 9 8 7 11 11 H 1.09003 * 109.57169 * 42.56664 * 10 9 8 12 12 C 1.50704 * 109.56906 * 162.80990 * 10 9 8 13 13 H 1.07994 * 119.99842 * 120.00490 * 12 10 9 14 14 C 1.37874 * 120.00059 * 300.00013 * 12 10 9 15 15 N 1.31515 * 119.99983 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 120.00405 * 0.02562 * 14 12 10 17 17 H 1.48502 * 109.47108 * 89.99795 * 16 14 12 18 18 H 1.48497 * 109.47549 * 209.99950 * 16 14 12 19 19 H 1.48505 * 109.47031 * 329.99998 * 16 14 12 20 20 C 1.50531 * 108.86317 * 282.74808 * 10 9 8 21 21 C 1.47980 * 111.06001 * 193.48388 * 6 5 4 22 22 C 1.48191 * 111.06840 * 260.57087 * 2 1 3 23 23 H 1.09004 * 109.46857 * 60.00022 * 1 2 3 24 24 H 1.09003 * 109.46725 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47418 * 299.99896 * 1 2 3 26 26 H 1.08996 * 113.76138 * 108.09911 * 3 2 1 27 27 H 1.09002 * 113.85793 * 336.74948 * 3 2 1 28 28 H 1.09000 * 113.72858 * 269.25739 * 4 3 2 29 29 H 1.08999 * 109.47113 * 56.90733 * 5 4 3 30 30 H 1.08997 * 109.47586 * 296.89766 * 5 4 3 31 31 H 1.09002 * 109.69591 * 101.63825 * 7 6 5 32 32 H 1.08996 * 109.69408 * 341.09135 * 7 6 5 33 33 H 1.08992 * 108.85034 * 39.40912 * 8 7 6 34 34 H 1.09000 * 108.84471 * 157.77269 * 8 7 6 35 35 H 1.09004 * 109.03836 * 182.06395 * 9 8 7 36 36 H 1.09000 * 109.04178 * 301.00924 * 9 8 7 37 37 H 0.96995 * 120.00364 * 180.02562 * 15 14 12 38 38 H 1.08995 * 108.79299 * 212.64751 * 20 10 9 39 39 H 1.09003 * 108.78662 * 330.86723 * 20 10 9 40 40 H 1.09003 * 108.71374 * 71.20090 * 21 6 5 41 41 H 1.09001 * 108.68299 * 313.20457 * 21 6 5 42 42 H 1.08994 * 113.76655 * 23.23400 * 22 2 1 43 43 H 1.09007 * 113.82160 * 251.80897 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0211 0.8793 -1.0361 5 6 3.2610 1.8571 -2.1882 6 7 4.3007 1.3210 -3.0769 7 6 3.8487 0.1190 -3.7352 8 6 5.0093 -0.8930 -3.7469 9 6 5.9610 -0.6442 -4.8242 10 6 6.6257 0.7442 -4.6891 11 1 6.8883 0.9234 -3.6465 12 6 7.8696 0.7931 -5.5385 13 1 7.9539 1.5217 -6.3312 14 6 8.9001 -0.0922 -5.3035 15 7 9.9858 -0.0492 -6.0444 16 14 8.7542 -1.3529 -3.9328 17 1 8.1397 -2.5951 -4.4661 18 1 10.1046 -1.6594 -3.3963 19 1 7.9023 -0.8062 -2.8461 20 6 5.6539 1.7962 -5.1525 21 6 4.7903 2.3600 -4.0099 22 6 2.0018 -0.2265 -1.3642 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.4460 1.6803 0.9482 27 1 1.3021 2.1212 -0.3935 28 1 3.9459 0.5069 -0.5953 29 1 3.5853 2.8177 -1.7879 30 1 2.3365 1.9908 -2.7498 31 1 3.5523 0.3498 -4.7584 32 1 3.0013 -0.3003 -3.1930 33 1 5.5344 -0.8376 -2.7935 34 1 4.6002 -1.8965 -3.8635 35 1 6.7340 -1.4124 -4.8003 36 1 5.4384 -0.6956 -5.7794 37 1 10.7107 -0.6722 -5.8794 38 1 6.2124 2.6144 -5.6070 39 1 4.9979 1.3606 -5.9062 40 1 5.3819 3.0833 -3.4486 41 1 3.9316 2.8743 -4.4416 42 1 1.3043 0.0405 -2.1580 43 1 2.4505 -1.2101 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261005849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:46 Heat of formation + Delta-G solvation = 42.718444 kcal Electronic energy + Delta-G solvation = -19803.633813 eV Core-core repulsion = 17077.871920 eV Total energy + Delta-G solvation = -2725.761893 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.33090 -38.38083 -34.82136 -32.25256 -31.73289 -30.70976 -27.66728 -26.54216 -25.52467 -24.73679 -22.65299 -21.83252 -19.93219 -19.48347 -18.70944 -16.78869 -16.37797 -15.88735 -15.48759 -14.90326 -14.72808 -14.21890 -13.76520 -13.56477 -13.17673 -12.89160 -12.78662 -12.57712 -12.51101 -12.03890 -11.86457 -11.49104 -11.28160 -11.09535 -11.00212 -10.73780 -10.57068 -10.42989 -10.05031 -9.95982 -9.66696 -9.51351 -9.07188 -8.97536 -8.79649 -8.42011 -7.80520 -5.97660 -3.95556 3.36070 3.47776 3.53806 3.75257 4.02225 4.43595 4.52270 4.71862 4.86240 5.09867 5.21209 5.25087 5.26710 5.31371 5.39717 5.45322 5.54667 5.57075 5.60028 5.63336 5.72499 5.79267 5.82308 5.92426 6.04969 6.11027 6.17362 6.26658 6.43989 6.51315 6.60487 6.71047 6.84050 6.95808 7.08427 7.15155 7.41296 7.50448 7.66145 7.77520 7.92616 8.62962 9.06655 9.66493 11.15522 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034519 B = 0.005520 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.943166 B = 5070.954654 C = 5447.838448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.486 5.486 3 C 0.004 3.996 4 C -0.106 4.106 5 C 0.069 3.931 6 N -0.542 5.542 7 C 0.061 3.939 8 C -0.111 4.111 9 C -0.124 4.124 10 C 0.025 3.975 11 H 0.038 0.962 12 C -0.512 4.512 13 H 0.070 0.930 14 C 0.067 3.933 15 N -0.907 5.907 16 Si 0.886 3.114 17 H -0.281 1.281 18 H -0.301 1.301 19 H -0.257 1.257 20 C -0.099 4.099 21 C 0.067 3.933 22 C 0.003 3.997 23 H 0.032 0.968 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.038 0.962 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.262 0.738 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.018 0.982 42 H 0.067 0.933 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.284 1.971 9.842 20.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.208 5.208 3 C -0.125 4.125 4 C -0.125 4.125 5 C -0.060 4.060 6 N -0.267 5.267 7 C -0.067 4.067 8 C -0.149 4.149 9 C -0.162 4.162 10 C 0.006 3.994 11 H 0.056 0.944 12 C -0.549 4.549 13 H 0.088 0.912 14 C -0.134 4.134 15 N -0.546 5.546 16 Si 0.716 3.284 17 H -0.209 1.209 18 H -0.229 1.229 19 H -0.182 1.182 20 C -0.137 4.137 21 C -0.060 4.060 22 C -0.126 4.126 23 H 0.051 0.949 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.128 0.872 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.036 0.964 42 H 0.085 0.915 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.594 1.317 10.605 20.585 hybrid contribution -1.024 -0.066 -0.584 1.181 sum -18.619 1.251 10.020 21.181 Atomic orbital electron populations 1.22847 0.90027 1.02262 1.00798 1.68526 1.08696 1.18625 1.25000 1.23976 0.97028 0.91265 1.00236 1.23040 0.98499 0.95537 0.95448 1.22055 0.92934 0.97647 0.93329 1.60649 1.36745 1.06116 1.23180 1.21937 0.96895 0.90840 0.97062 1.20565 0.96807 0.96394 1.01175 1.20977 0.97364 1.00881 0.96938 1.18845 0.93177 0.89522 0.97864 0.94368 1.21234 0.98776 1.17922 1.17015 0.91211 1.25038 0.95128 0.97342 0.95862 1.69915 1.06784 1.37992 1.39868 0.86856 0.76105 0.81866 0.83532 1.20867 1.22910 1.18169 1.21382 0.97007 1.00107 0.95179 1.22473 0.96976 0.92849 0.93710 1.24200 0.96948 1.01060 0.90352 0.94944 0.91280 0.91519 0.89293 0.91483 0.87195 0.90754 0.95581 0.94323 0.91616 0.91705 0.93901 0.93302 0.93551 0.92881 0.91654 0.93896 0.91501 0.96409 0.91460 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.65 60.07 0.58 0.49 16 2 N -0.49 -5.30 6.55 -246.34 -1.61 -6.91 16 3 C 0.00 0.04 7.55 -2.76 -0.02 0.02 16 4 C -0.11 -1.21 3.78 -89.68 -0.34 -1.55 16 5 C 0.07 0.84 4.81 -3.82 -0.02 0.82 16 6 N -0.54 -8.42 4.01 -234.60 -0.94 -9.36 16 7 C 0.06 0.94 5.11 -4.70 -0.02 0.91 16 8 C -0.11 -2.02 5.37 -29.59 -0.16 -2.18 16 9 C -0.12 -2.70 3.99 -29.30 -0.12 -2.81 16 10 C 0.02 0.58 1.37 -92.21 -0.13 0.46 16 11 H 0.04 0.95 6.87 -51.93 -0.36 0.59 16 12 C -0.51 -14.50 9.03 -34.44 -0.31 -14.81 16 13 H 0.07 2.13 7.73 -52.49 -0.41 1.73 16 14 C 0.07 1.97 5.44 -17.82 -0.10 1.87 16 15 N -0.91 -28.30 13.96 55.43 0.77 -27.53 16 16 Si 0.89 22.56 24.44 -169.99 -4.15 18.41 16 17 H -0.28 -7.00 6.77 56.52 0.38 -6.62 16 18 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 19 H -0.26 -6.30 6.42 56.52 0.36 -5.94 16 20 C -0.10 -1.96 4.82 -27.48 -0.13 -2.09 16 21 C 0.07 1.09 5.38 -2.75 -0.01 1.07 16 22 C 0.00 0.03 5.25 -2.63 -0.01 0.01 16 23 H 0.03 0.27 7.63 -51.93 -0.40 -0.13 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.58 7.88 -51.93 -0.41 0.17 16 28 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 30 H 0.03 0.30 7.85 -51.93 -0.41 -0.11 16 31 H 0.04 0.61 6.79 -51.93 -0.35 0.26 16 32 H 0.07 0.86 4.06 -51.93 -0.21 0.65 16 33 H 0.06 1.26 7.97 -51.93 -0.41 0.85 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 1.16 3.46 -51.93 -0.18 0.99 16 36 H 0.05 0.97 7.58 -51.93 -0.39 0.58 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.06 1.33 7.53 -51.93 -0.39 0.94 16 39 H 0.04 0.82 6.66 -51.93 -0.35 0.48 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.26 8.02 -51.93 -0.42 -0.16 16 42 H 0.07 0.69 7.15 -51.93 -0.37 0.32 16 43 H 0.09 1.06 7.84 -51.93 -0.41 0.65 16 LS Contribution 311.03 15.07 4.69 4.69 Total: -1.00 -30.50 311.03 -9.65 -40.15 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.60 Total: -1.66 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -0.79 Total: -17.79 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -1.78 Total: -43.80 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.15 Total: 18.41 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.50 -9.65 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.866 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds