Wall clock time and date at job start Mon Mar 30 2020 03:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47961 * 110.99868 * 2 1 4 4 C 1.53941 * 86.18257 * 222.41971 * 3 2 1 5 5 C 1.52996 * 113.73317 * 138.07815 * 4 3 2 6 6 N 1.46906 * 109.46679 * 176.89658 * 5 4 3 7 7 C 1.44307 * 110.99707 * 66.05062 * 6 5 4 8 8 C 1.53982 * 108.35078 * 221.36788 * 7 6 5 9 9 C 1.45884 * 112.65797 * 278.58524 * 8 7 6 10 10 C 1.54520 * 111.67234 * 61.50068 * 9 8 7 11 11 H 1.09003 * 109.57169 * 42.56664 * 10 9 8 12 12 C 1.50704 * 109.56906 * 162.80990 * 10 9 8 13 13 H 1.07994 * 119.99842 * 120.00490 * 12 10 9 14 14 C 1.37874 * 120.00059 * 300.00013 * 12 10 9 15 15 N 1.31515 * 119.99983 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 120.00405 * 0.02562 * 14 12 10 17 17 H 1.48502 * 109.47108 * 89.99795 * 16 14 12 18 18 H 1.48497 * 109.47549 * 209.99950 * 16 14 12 19 19 H 1.48505 * 109.47031 * 329.99998 * 16 14 12 20 20 C 1.50531 * 108.86317 * 282.74808 * 10 9 8 21 21 C 1.47980 * 111.06001 * 193.48388 * 6 5 4 22 22 C 1.48191 * 111.06840 * 260.57087 * 2 1 3 23 23 H 1.09004 * 109.46857 * 60.00022 * 1 2 3 24 24 H 1.09003 * 109.46725 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47418 * 299.99896 * 1 2 3 26 26 H 1.08996 * 113.76138 * 108.09911 * 3 2 1 27 27 H 1.09002 * 113.85793 * 336.74948 * 3 2 1 28 28 H 1.09000 * 113.72858 * 269.25739 * 4 3 2 29 29 H 1.08999 * 109.47113 * 56.90733 * 5 4 3 30 30 H 1.08997 * 109.47586 * 296.89766 * 5 4 3 31 31 H 1.09002 * 109.69591 * 101.63825 * 7 6 5 32 32 H 1.08996 * 109.69408 * 341.09135 * 7 6 5 33 33 H 1.08992 * 108.85034 * 39.40912 * 8 7 6 34 34 H 1.09000 * 108.84471 * 157.77269 * 8 7 6 35 35 H 1.09004 * 109.03836 * 182.06395 * 9 8 7 36 36 H 1.09000 * 109.04178 * 301.00924 * 9 8 7 37 37 H 0.96995 * 120.00364 * 180.02562 * 15 14 12 38 38 H 1.08995 * 108.79299 * 212.64751 * 20 10 9 39 39 H 1.09003 * 108.78662 * 330.86723 * 20 10 9 40 40 H 1.09003 * 108.71374 * 71.20090 * 21 6 5 41 41 H 1.09001 * 108.68299 * 313.20457 * 21 6 5 42 42 H 1.08994 * 113.76655 * 23.23400 * 22 2 1 43 43 H 1.09007 * 113.82160 * 251.80897 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0211 0.8793 -1.0361 5 6 3.2610 1.8571 -2.1882 6 7 4.3007 1.3210 -3.0769 7 6 3.8487 0.1190 -3.7352 8 6 5.0093 -0.8930 -3.7469 9 6 5.9610 -0.6442 -4.8242 10 6 6.6257 0.7442 -4.6891 11 1 6.8883 0.9234 -3.6465 12 6 7.8696 0.7931 -5.5385 13 1 7.9539 1.5217 -6.3312 14 6 8.9001 -0.0922 -5.3035 15 7 9.9858 -0.0492 -6.0444 16 14 8.7542 -1.3529 -3.9328 17 1 8.1397 -2.5951 -4.4661 18 1 10.1046 -1.6594 -3.3963 19 1 7.9023 -0.8062 -2.8461 20 6 5.6539 1.7962 -5.1525 21 6 4.7903 2.3600 -4.0099 22 6 2.0018 -0.2265 -1.3642 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.4460 1.6803 0.9482 27 1 1.3021 2.1212 -0.3935 28 1 3.9459 0.5069 -0.5953 29 1 3.5853 2.8177 -1.7879 30 1 2.3365 1.9908 -2.7498 31 1 3.5523 0.3498 -4.7584 32 1 3.0013 -0.3003 -3.1930 33 1 5.5344 -0.8376 -2.7935 34 1 4.6002 -1.8965 -3.8635 35 1 6.7340 -1.4124 -4.8003 36 1 5.4384 -0.6956 -5.7794 37 1 10.7107 -0.6722 -5.8794 38 1 6.2124 2.6144 -5.6070 39 1 4.9979 1.3606 -5.9062 40 1 5.3819 3.0833 -3.4486 41 1 3.9316 2.8743 -4.4416 42 1 1.3043 0.0405 -2.1580 43 1 2.4505 -1.2101 -1.5038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261005849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:45 Heat of formation + Delta-G solvation = 20.327963 kcal Electronic energy + Delta-G solvation = -19804.604737 eV Core-core repulsion = 17077.871920 eV Total energy + Delta-G solvation = -2726.732817 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.21934 -39.70621 -36.34368 -34.19850 -33.20698 -31.82683 -28.97957 -27.64596 -26.77018 -25.93654 -24.35615 -22.82599 -21.23806 -20.64087 -20.16912 -18.86322 -17.54134 -17.04332 -16.51591 -16.22692 -15.91712 -15.47365 -15.10183 -14.82770 -14.61753 -14.46694 -14.32091 -13.67798 -13.61509 -13.49816 -13.11996 -12.84438 -12.63389 -12.33677 -12.27387 -11.95225 -11.86657 -11.82094 -11.45722 -11.39396 -11.30583 -11.26144 -10.94270 -10.75739 -10.56301 -9.73448 -8.96890 -8.26866 -6.28712 1.31517 1.38548 1.51120 2.36497 2.94887 2.99854 3.08674 3.60109 3.83571 4.07966 4.11195 4.16582 4.23692 4.36595 4.38845 4.40291 4.45898 4.52135 4.56882 4.64299 4.65257 4.77552 4.79595 4.85135 4.92963 4.96392 4.99680 5.01114 5.06353 5.19269 5.31678 5.39496 5.41487 5.42109 5.54418 5.64335 5.79106 5.89890 6.11874 6.33361 6.38391 6.47932 6.80709 7.37216 8.89909 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034519 B = 0.005520 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.943166 B = 5070.954654 C = 5447.838448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.507 5.507 3 C 0.013 3.987 4 C -0.107 4.107 5 C 0.073 3.927 6 N -0.560 5.560 7 C 0.068 3.932 8 C -0.111 4.111 9 C -0.118 4.118 10 C 0.028 3.972 11 H 0.026 0.974 12 C -0.517 4.517 13 H 0.030 0.970 14 C 0.010 3.990 15 N -0.955 5.955 16 Si 0.949 3.051 17 H -0.270 1.270 18 H -0.304 1.304 19 H -0.242 1.242 20 C -0.096 4.096 21 C 0.075 3.925 22 C 0.004 3.996 23 H 0.040 0.960 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.026 0.974 36 H 0.049 0.951 37 H 0.263 0.737 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.260 1.722 11.530 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.229 5.229 3 C -0.116 4.116 4 C -0.126 4.126 5 C -0.054 4.054 6 N -0.285 5.285 7 C -0.060 4.060 8 C -0.150 4.150 9 C -0.156 4.156 10 C 0.009 3.991 11 H 0.045 0.955 12 C -0.555 4.555 13 H 0.049 0.951 14 C -0.186 4.186 15 N -0.596 5.596 16 Si 0.777 3.223 17 H -0.196 1.196 18 H -0.232 1.232 19 H -0.166 1.166 20 C -0.134 4.134 21 C -0.051 4.051 22 C -0.124 4.124 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.109 0.891 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.602 1.081 12.302 24.020 hybrid contribution -0.085 0.079 -1.168 1.174 sum -20.687 1.160 11.134 23.521 Atomic orbital electron populations 1.22878 0.88788 1.02649 1.01612 1.68507 1.10094 1.19362 1.24933 1.23970 0.96525 0.91213 0.99876 1.22938 0.98104 0.95865 0.95679 1.22093 0.92517 0.97963 0.92866 1.60570 1.38621 1.06144 1.23204 1.21870 0.96360 0.90258 0.97552 1.20535 0.96984 0.98745 0.98701 1.20872 0.97491 0.98483 0.98728 1.18748 0.92161 0.92264 0.95887 0.95545 1.21642 1.01056 1.16431 1.16358 0.95128 1.25881 0.94723 0.99641 0.98394 1.70064 1.07918 1.39490 1.42159 0.85830 0.76054 0.79646 0.80788 1.19604 1.23215 1.16591 1.21260 0.96731 0.98545 0.96887 1.22278 0.97211 0.92938 0.92710 1.24187 0.96936 1.00384 0.90931 0.94089 0.91185 0.90717 0.89062 0.89874 0.89281 0.90074 0.93999 0.94403 0.88948 0.92966 0.91664 0.95543 0.93274 0.92810 0.93342 0.93352 0.91573 0.93908 0.90293 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.15 9.65 127.69 1.23 1.08 16 2 N -0.51 -9.54 6.55 -933.30 -6.12 -15.66 16 3 C 0.01 0.22 7.55 86.41 0.65 0.87 16 4 C -0.11 -2.12 3.78 -10.15 -0.04 -2.16 16 5 C 0.07 1.52 4.81 86.30 0.42 1.94 16 6 N -0.56 -15.78 4.01 -896.13 -3.59 -19.37 16 7 C 0.07 1.87 5.11 87.12 0.44 2.31 16 8 C -0.11 -3.76 5.37 28.74 0.15 -3.60 16 9 C -0.12 -4.99 3.99 28.93 0.12 -4.87 16 10 C 0.03 1.32 1.37 -11.82 -0.02 1.31 16 11 H 0.03 1.30 6.87 -2.39 -0.02 1.29 16 12 C -0.52 -30.24 9.03 25.60 0.23 -30.01 16 13 H 0.03 1.97 7.73 -2.91 -0.02 1.95 16 14 C 0.01 0.58 5.44 84.65 0.46 1.04 16 15 N -0.96 -61.66 13.96 21.45 0.30 -61.36 16 16 Si 0.95 47.21 24.44 68.60 1.68 48.89 16 17 H -0.27 -12.81 6.77 99.48 0.67 -12.14 16 18 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 19 H -0.24 -11.34 6.42 99.48 0.64 -10.70 16 20 C -0.10 -3.75 4.82 30.11 0.14 -3.61 16 21 C 0.08 2.29 5.38 86.41 0.46 2.76 16 22 C 0.00 0.07 5.25 86.37 0.45 0.52 16 23 H 0.04 0.52 7.63 -2.38 -0.02 0.50 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.10 7.88 -2.39 -0.02 1.08 16 28 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.08 1.59 8.04 -2.39 -0.02 1.57 16 30 H 0.04 0.77 7.85 -2.39 -0.02 0.75 16 31 H 0.04 1.06 6.79 -2.39 -0.02 1.05 16 32 H 0.09 2.06 4.06 -2.39 -0.01 2.05 16 33 H 0.05 1.90 7.97 -2.39 -0.02 1.88 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.03 1.22 3.46 -2.38 -0.01 1.22 16 36 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 37 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 38 H 0.05 2.01 7.53 -2.39 -0.02 1.99 16 39 H 0.05 1.80 6.66 -2.39 -0.02 1.78 16 40 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 41 H 0.04 1.10 8.02 -2.39 -0.02 1.08 16 42 H 0.08 1.28 7.15 -2.39 -0.02 1.27 16 43 H 0.08 1.68 7.84 -2.38 -0.02 1.67 16 Total: -1.00 -67.35 311.03 -2.16 -69.51 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.86 Total: 10.42 kcal Atomic # 6 Polarization: -37.14 SS G_CDS: 4.72 Total: -32.43 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -9.41 Total: -96.39 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.68 Total: 48.89 kcal Total: -67.35 -2.16 -69.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.834 kcal (2) G-P(sol) polarization free energy of solvation -67.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds